Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1444375Fold d.175: Penicillin binding protein dimerisation domain [56518] (1 superfamily)
    unusual fold
  4. 1444376Superfamily d.175.1: Penicillin binding protein dimerisation domain [56519] (2 families) (S)
    automatically mapped to Pfam PF03717
  5. 1444404Family d.175.1.0: automated matches [227232] (1 protein)
    not a true family
  6. 1444405Protein automated matches [226981] (4 species)
    not a true protein

Species:

  1. 1444406Atopobium parvulum [TaxId:521095] [237724] (1 PDB entry)
  2. 1444408Neisseria gonorrhoeae [TaxId:485] [225540] (2 PDB entries)
    1. Domains for 3equ:
      1. 1444409Domain d3equa1: 3equ A:63-237 [209614]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
      2. 1444410Domain d3equb1: 3equ B:65-237 [209616]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
    2. Domains for 3eqv:
      1. 1444411Domain d3eqva1: 3eqv A:53-237 [232067]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d3equa1
        complexed with gol, so4; mutant
      2. 1444412Domain d3eqvb1: 3eqv B:66-237 [232066]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d4kqoa1
        complexed with gol, so4; mutant
  3. 1444413Pseudomonas aeruginosa [TaxId:208964] [228776] (8 PDB entries)
    1. Domain for 3oc2:
    2. Domain for 3ocl:
    3. Domain for 3ocn:
    4. Domain for 3pbn:
    5. Domain for 3pbo:
    6. Domains for 4kqo:
      1. 1444423Domain d4kqoa1: 4kqo A:50-221 [228777]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d3equa1
        complexed with cl, gol, imd, jpp
      2. 1444424Domain d4kqob1: 4kqo B:58-221 [235207]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d4kqoa1
        complexed with cl, gol, imd, jpp
    7. Domains for 4kqq:
      1. 1444420Domain d4kqqa1: 4kqq A:51-221 [235213]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 1444421Domain d4kqqb1: 4kqq B:57-221 [235209]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
    8. Domains for 4kqr:
      1. 1444417Domain d4kqra1: 4kqr A:51-221 [235211]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 1444418Domain d4kqrb1: 4kqr B:53-221 [235215]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
  4. 1444425Pseudomonas aeruginosa [TaxId:287] [234430] (2 PDB entries)
    1. Domain for 4fsf:
    2. Domain for 4l0l:

More info for Protein automated matches from d.175.1.0: automated matches

Timeline for Protein automated matches from d.175.1.0: automated matches: