Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2210992Fold d.175: Penicillin binding protein dimerisation domain [56518] (1 superfamily)
    unusual fold
  4. 2210993Superfamily d.175.1: Penicillin binding protein dimerisation domain [56519] (2 families) (S)
    automatically mapped to Pfam PF03717
  5. 2211023Family d.175.1.0: automated matches [227232] (1 protein)
    not a true family
  6. 2211024Protein automated matches [226981] (10 species)
    not a true protein

Species:

  1. 2211025Atopobium parvulum [TaxId:521095] [237724] (1 PDB entry)
  2. 2211027Neisseria gonorrhoeae [TaxId:485] [225540] (2 PDB entries)
    1. Domains for 3equ:
      1. 2211028Domain d3equa1: 3equ A:63-237 [209614]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
      2. 2211029Domain d3equb1: 3equ B:65-237 [209616]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
    2. Domains for 3eqv:
      1. 2211030Domain d3eqva1: 3eqv A:53-237 [232067]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d3equa1
        complexed with gol, so4; mutant
      2. 2211031Domain d3eqvb1: 3eqv B:66-237 [232066]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d4kqoa1
        complexed with gol, so4; mutant
  3. 2211032Pseudomonas aeruginosa [TaxId:1163392] [271725] (1 PDB entry)
  4. 2211034Pseudomonas aeruginosa [TaxId:1279008] [257303] (2 PDB entries)
    1. Domain for 4ool:
    2. Domain for 4oom:
  5. 2211037Pseudomonas aeruginosa [TaxId:287] [234430] (3 PDB entries)
    1. Domain for 4fsf:
    2. Domain for 4l0l:
    3. Domain for 5df7:
  6. 2211041Pseudomonas aeruginosa [TaxId:652611] [271719] (2 PDB entries)
    1. Domain for 4wej:
    2. Domain for 4wel:
  7. 2211044Pseudomonas aeruginosa, PA01 [TaxId:208964] [228776] (15 PDB entries)
    1. Domain for 3oc2:
    2. Domain for 3ocl:
    3. Domain for 3ocn:
    4. Domain for 3pbn:
    5. Domain for 3pbo:
    6. Domain for 3pbq:
    7. Domain for 3pbr:
    8. Domain for 3pbs:
    9. Domain for 3pbt:
    10. Domains for 4kqo:
      1. 2211060Domain d4kqoa1: 4kqo A:50-221 [228777]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d3equa1
        complexed with cl, gol, imd, jpp
      2. 2211061Domain d4kqob1: 4kqo B:58-221 [235207]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d4kqoa1
        complexed with cl, gol, imd, jpp
    11. Domains for 4kqq:
      1. 2211054Domain d4kqqa1: 4kqq A:51-221 [235213]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 2211055Domain d4kqqb1: 4kqq B:57-221 [235209]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
    12. Domains for 4kqr:
      1. 2211052Domain d4kqra1: 4kqr A:51-221 [235211]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 2211053Domain d4kqrb1: 4kqr B:53-221 [235215]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
    13. Domain for 5df7:
    14. Domains for 5df8:
      1. 2211057Domain d5df8a1: 5df8 A:51-221 [280311]
        Other proteins in same PDB: d5df8a2, d5df8b2
        automated match to d4kqra1
        complexed with 59f, cl, gol
      2. 2211058Domain d5df8b1: 5df8 B:57-221 [280313]
        Other proteins in same PDB: d5df8a2, d5df8b2
        automated match to d4kqra1
        complexed with 59f, cl, gol
    15. Domain for 5df9:
  8. 2211064Staphylococcus aureus [TaxId:1280] [256159] (3 PDB entries)
    1. Domains for 3zg5:
      1. 2211065Domain d3zg5a2: 3zg5 A:139-327 [250786]
        Other proteins in same PDB: d3zg5a1, d3zg5a3, d3zg5b1, d3zg5b3
        automated match to d1vqqa2
        complexed with cd, cl
      2. 2211066Domain d3zg5b2: 3zg5 B:139-327 [250789]
        Other proteins in same PDB: d3zg5a1, d3zg5a3, d3zg5b1, d3zg5b3
        automated match to d1vqqa2
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 2211067Domain d4bl2a2: 4bl2 A:139-327 [256552]
        Other proteins in same PDB: d4bl2a1, d4bl2a3, d4bl2b1, d4bl2b3
        automated match to d1vqqa2
        complexed with cd, cl; mutant
      2. 2211068Domain d4bl2b2: 4bl2 B:139-327 [256555]
        Other proteins in same PDB: d4bl2a1, d4bl2a3, d4bl2b1, d4bl2b3
        automated match to d1vqqa2
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 2211069Domain d4bl3a2: 4bl3 A:139-327 [256558]
        Other proteins in same PDB: d4bl3a1, d4bl3a3, d4bl3b1, d4bl3b3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
      2. 2211070Domain d4bl3b2: 4bl3 B:139-327 [259320]
        Other proteins in same PDB: d4bl3a1, d4bl3a3, d4bl3b1, d4bl3b3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
  9. 2211071Staphylococcus aureus [TaxId:158878] [256156] (4 PDB entries)
    1. Domains for 3zfz:
      1. 2211074Domain d3zfza2: 3zfz A:139-327 [250774]
        Other proteins in same PDB: d3zfza1, d3zfza3, d3zfzb1, d3zfzb3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
      2. 2211075Domain d3zfzb2: 3zfz B:139-327 [250777]
        Other proteins in same PDB: d3zfza1, d3zfza3, d3zfzb1, d3zfzb3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 2211078Domain d3zg0a2: 3zg0 A:139-327 [250780]
        Other proteins in same PDB: d3zg0a1, d3zg0a3, d3zg0b1, d3zg0b3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
      2. 2211079Domain d3zg0b2: 3zg0 B:139-327 [250783]
        Other proteins in same PDB: d3zg0a1, d3zg0a3, d3zg0b1, d3zg0b3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
    3. Domains for 4cjn:
      1. 2211072Domain d4cjna2: 4cjn A:139-327 [269622]
        Other proteins in same PDB: d4cjna1, d4cjna3, d4cjnb1, d4cjnb3
        automated match to d1vqqa2
        complexed with cd, cl, mur, qnz
      2. 2211073Domain d4cjnb2: 4cjn B:139-327 [269621]
        Other proteins in same PDB: d4cjna1, d4cjna3, d4cjnb1, d4cjnb3
        automated match to d1vqqa2
        complexed with cd, cl, mur, qnz
    4. Domains for 4cpk:
      1. 2211076Domain d4cpka2: 4cpk A:139-327 [262607]
        Other proteins in same PDB: d4cpka1, d4cpka3, d4cpkb1, d4cpkb3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
      2. 2211077Domain d4cpkb2: 4cpk B:139-327 [259338]
        Other proteins in same PDB: d4cpka1, d4cpka3, d4cpkb1, d4cpkb3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
  10. 2282791Staphylococcus aureus [TaxId:93062] [326092] (1 PDB entry)

More info for Protein automated matches from d.175.1.0: automated matches

Timeline for Protein automated matches from d.175.1.0: automated matches: