SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2210992Fold d.175: Penicillin binding protein dimerisation domain [56518] (1 superfamily)
    unusual fold
  4. 2210993Superfamily d.175.1: Penicillin binding protein dimerisation domain [56519] (2 families) (S)
    automatically mapped to Pfam PF03717
  5. 2211023Family d.175.1.0: automated matches [227232] (1 protein)
    not a true family
  6. 2211024Protein automated matches [226981] (10 species)
    not a true protein

Species:

  1. 2211025Atopobium parvulum [TaxId:521095] [237724] (1 PDB entry)
  2. 2211027Neisseria gonorrhoeae [TaxId:485] [225540] (2 PDB entries)
    1. Domains for 3equ:
      1. 2211028Domain d3equa1: 3equ A:63-237 [209614]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
      2. 2211029Domain d3equb1: 3equ B:65-237 [209616]
        Other proteins in same PDB: d3equa2, d3equb2
        automated match to d1qmea3
        complexed with gol, so4
    2. Domains for 3eqv:
      1. 2211030Domain d3eqva1: 3eqv A:53-237 [232067]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d3equa1
        complexed with gol, so4; mutant
      2. 2211031Domain d3eqvb1: 3eqv B:66-237 [232066]
        Other proteins in same PDB: d3eqva2, d3eqvb2
        automated match to d4kqoa1
        complexed with gol, so4; mutant
  3. 2211032Pseudomonas aeruginosa [TaxId:1163392] [271725] (1 PDB entry)
  4. 2211034Pseudomonas aeruginosa [TaxId:1279008] [257303] (2 PDB entries)
    1. Domain for 4ool:
    2. Domain for 4oom:
  5. 2211037Pseudomonas aeruginosa [TaxId:287] [234430] (3 PDB entries)
    1. Domain for 4fsf:
    2. Domain for 4l0l:
    3. Domain for 5df7:
  6. 2211041Pseudomonas aeruginosa [TaxId:652611] [271719] (2 PDB entries)
    1. Domain for 4wej:
    2. Domain for 4wel:
  7. 2211044Pseudomonas aeruginosa, PA01 [TaxId:208964] [228776] (15 PDB entries)
    1. Domain for 3oc2:
    2. Domain for 3ocl:
    3. Domain for 3ocn:
    4. Domain for 3pbn:
    5. Domain for 3pbo:
    6. Domain for 3pbq:
    7. Domain for 3pbr:
    8. Domain for 3pbs:
    9. Domain for 3pbt:
    10. Domains for 4kqo:
      1. 2211060Domain d4kqoa1: 4kqo A:50-221 [228777]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d3equa1
        complexed with cl, gol, imd, jpp
      2. 2211061Domain d4kqob1: 4kqo B:58-221 [235207]
        Other proteins in same PDB: d4kqoa2, d4kqob2
        automated match to d4kqoa1
        complexed with cl, gol, imd, jpp
    11. Domains for 4kqq:
      1. 2211054Domain d4kqqa1: 4kqq A:51-221 [235213]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 2211055Domain d4kqqb1: 4kqq B:57-221 [235209]
        Other proteins in same PDB: d4kqqa2, d4kqqb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
    12. Domains for 4kqr:
      1. 2211052Domain d4kqra1: 4kqr A:51-221 [235211]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
      2. 2211053Domain d4kqrb1: 4kqr B:53-221 [235215]
        Other proteins in same PDB: d4kqra2, d4kqrb2
        automated match to d4kqoa1
        complexed with cl, gol, imd, vpp
    13. Domain for 5df7:
    14. Domains for 5df8:
      1. 2211057Domain d5df8a1: 5df8 A:51-221 [280311]
        Other proteins in same PDB: d5df8a2, d5df8b2
        automated match to d4kqra1
        complexed with 59f, cl, gol
      2. 2211058Domain d5df8b1: 5df8 B:57-221 [280313]
        Other proteins in same PDB: d5df8a2, d5df8b2
        automated match to d4kqra1
        complexed with 59f, cl, gol
    15. Domain for 5df9:
  8. 2211064Staphylococcus aureus [TaxId:1280] [256159] (3 PDB entries)
    1. Domains for 3zg5:
      1. 2211065Domain d3zg5a2: 3zg5 A:139-327 [250786]
        Other proteins in same PDB: d3zg5a1, d3zg5a3, d3zg5b1, d3zg5b3
        automated match to d1vqqa2
        complexed with cd, cl
      2. 2211066Domain d3zg5b2: 3zg5 B:139-327 [250789]
        Other proteins in same PDB: d3zg5a1, d3zg5a3, d3zg5b1, d3zg5b3
        automated match to d1vqqa2
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 2211067Domain d4bl2a2: 4bl2 A:139-327 [256552]
        Other proteins in same PDB: d4bl2a1, d4bl2a3, d4bl2b1, d4bl2b3
        automated match to d1vqqa2
        complexed with cd, cl; mutant
      2. 2211068Domain d4bl2b2: 4bl2 B:139-327 [256555]
        Other proteins in same PDB: d4bl2a1, d4bl2a3, d4bl2b1, d4bl2b3
        automated match to d1vqqa2
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 2211069Domain d4bl3a2: 4bl3 A:139-327 [256558]
        Other proteins in same PDB: d4bl3a1, d4bl3a3, d4bl3b1, d4bl3b3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
      2. 2211070Domain d4bl3b2: 4bl3 B:139-327 [259320]
        Other proteins in same PDB: d4bl3a1, d4bl3a3, d4bl3b1, d4bl3b3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
  9. 2211071Staphylococcus aureus [TaxId:158878] [256156] (4 PDB entries)
    1. Domains for 3zfz:
      1. 2211074Domain d3zfza2: 3zfz A:139-327 [250774]
        Other proteins in same PDB: d3zfza1, d3zfza3, d3zfzb1, d3zfzb3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
      2. 2211075Domain d3zfzb2: 3zfz B:139-327 [250777]
        Other proteins in same PDB: d3zfza1, d3zfza3, d3zfzb1, d3zfzb3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 2211078Domain d3zg0a2: 3zg0 A:139-327 [250780]
        Other proteins in same PDB: d3zg0a1, d3zg0a3, d3zg0b1, d3zg0b3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
      2. 2211079Domain d3zg0b2: 3zg0 B:139-327 [250783]
        Other proteins in same PDB: d3zg0a1, d3zg0a3, d3zg0b1, d3zg0b3
        automated match to d1vqqa2
        complexed with 1w8, ai8, cd, cl, mur
    3. Domains for 4cjn:
      1. 2211072Domain d4cjna2: 4cjn A:139-327 [269622]
        Other proteins in same PDB: d4cjna1, d4cjna3, d4cjnb1, d4cjnb3
        automated match to d1vqqa2
        complexed with cd, cl, mur, qnz
      2. 2211073Domain d4cjnb2: 4cjn B:139-327 [269621]
        Other proteins in same PDB: d4cjna1, d4cjna3, d4cjnb1, d4cjnb3
        automated match to d1vqqa2
        complexed with cd, cl, mur, qnz
    4. Domains for 4cpk:
      1. 2211076Domain d4cpka2: 4cpk A:139-327 [262607]
        Other proteins in same PDB: d4cpka1, d4cpka3, d4cpkb1, d4cpkb3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
      2. 2211077Domain d4cpkb2: 4cpk B:139-327 [259338]
        Other proteins in same PDB: d4cpka1, d4cpka3, d4cpkb1, d4cpkb3
        automated match to d1vqqa2
        complexed with cd, cl, mur; mutant
  10. 2282791Staphylococcus aureus [TaxId:93062] [326092] (1 PDB entry)

More info for Protein automated matches from d.175.1.0: automated matches

Timeline for Protein automated matches from d.175.1.0: automated matches: