SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2086988Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 2086989Family c.1.11.1: Enolase [51605] (2 protein domains)
    automatically mapped to Pfam PF00113
  6. 2087073Protein automated matches [226973] (6 species)
    not a true protein

Species:

  1. 2087074Bacillus subtilis [TaxId:1423] [226436] (1 PDB entry)
  2. 2087079Human (Homo sapiens) [TaxId:9606] [225520] (3 PDB entries)
    1. Domains for 2psn:
      1. 2087082Domain d2psna2: 2psn A:140-432 [205629]
        Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
        automated match to d1pdza1
        complexed with mg, po4
      2. 2087083Domain d2psnb2: 2psn B:140-432 [205631]
        Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
        automated match to d1pdza1
        complexed with mg, po4
      3. 2087084Domain d2psnc2: 2psn C:140-433 [205633]
        Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
        automated match to d1pdza1
        complexed with mg, po4
      4. 2087085Domain d2psnd2: 2psn D:140-431 [205635]
        Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
        automated match to d1pdza1
        complexed with mg, po4
    2. Domains for 2xsx:
      1. 2087080Domain d2xsxa2: 2xsx A:141-434 [207331]
        Other proteins in same PDB: d2xsxa1, d2xsxb1, d2xsxb3
        automated match to d1pdza1
        complexed with edo, mg, po4
      2. 2087081Domain d2xsxb2: 2xsx B:141-434 [207333]
        Other proteins in same PDB: d2xsxa1, d2xsxb1, d2xsxb3
        automated match to d1pdza1
        complexed with edo, mg, po4
    3. Domains for 3b97:
      1. 2087086Domain d3b97a2: 3b97 A:140-432 [208563]
        Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
        automated match to d1pdza1
        complexed with mg, so4
      2. 2087087Domain d3b97b2: 3b97 B:140-432 [208565]
        Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
        automated match to d1pdza1
        complexed with mg, so4
      3. 2087088Domain d3b97c2: 3b97 C:140-433 [208567]
        Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
        automated match to d1pdza1
        complexed with mg, so4
      4. 2087089Domain d3b97d2: 3b97 D:140-431 [208569]
        Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
        automated match to d1pdza1
        complexed with mg, so4
  3. 2087090Streptococcus suis [TaxId:1307] [226502] (1 PDB entry)
  4. 2087093Trypanosoma cruzi [TaxId:353153] [226458] (1 PDB entry)
  5. 2290307Drosophila melanogaster [TaxId:7227] [333608] (1 PDB entry)
  6. 2293731Escherichia coli [TaxId:83333] [337032] (1 PDB entry)

More info for Protein automated matches from c.1.11.1: Enolase

Timeline for Protein automated matches from c.1.11.1: Enolase: