SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)

(S)

binds metal ion (magnesium or manganese) in conserved site inside barrel
N-terminal alpha+beta domain is common to this superfamily

Family c.1.11.1: Enolase [51605] (2 proteins)
automatically mapped to Pfam PF00113
Protein automated matches [226973] (7 species)
not a true protein

Species:

Bacillus subtilis [TaxId:1423] [226436] (1 PDB entry)
- Domains for 4a3r:
  1. Domain d4a3ra2: 4a3r A:138-428 [218636]
    Other proteins in same PDB: d4a3ra1, d4a3rb1, d4a3rc1, d4a3rd1
    automated match to d1w6ta1
    complexed with cit, na
  2. Domain d4a3rb2: 4a3r B:138-428 [218638]
    Other proteins in same PDB: d4a3ra1, d4a3rb1, d4a3rc1, d4a3rd1
    automated match to d1w6ta1
    complexed with cit, na
  3. Domain d4a3rc2: 4a3r C:138-428 [218640]
    Other proteins in same PDB: d4a3ra1, d4a3rb1, d4a3rc1, d4a3rd1
    automated match to d1w6ta1
    complexed with cit, na
  4. Domain d4a3rd2: 4a3r D:138-428 [218642]
    Other proteins in same PDB: d4a3ra1, d4a3rb1, d4a3rc1, d4a3rd1
    automated match to d1w6ta1
    complexed with cit, na

Escherichia coli [TaxId:562] [359500] (3 PDB entries)

Domains for 6bfy:

Domain d6bfya2: 6bfy A:140-431 [359692]
Other proteins in same PDB: d6bfya1, d6bfya3, d6bfyb1, d6bfyb3, d6bfyc1, d6bfyc3, d6bfyd1, d6bfyd3, d6bfye1, d6bfye3, d6bfyf1, d6bfyf3
automated match to d2fymc1
complexed with 2pg, gol, mg, so4

Domain d6bfyb2: 6bfy B:140-430 [359502]
Other proteins in same PDB: d6bfya1, d6bfya3, d6bfyb1, d6bfyb3, d6bfyc1, d6bfyc3, d6bfyd1, d6bfyd3, d6bfye1, d6bfye3, d6bfyf1, d6bfyf3
automated match to d2fymc1
complexed with 2pg, gol, mg, so4

Domain d6bfyc2: 6bfy C:140-431 [359503]
Other proteins in same PDB: d6bfya1, d6bfya3, d6bfyb1, d6bfyb3, d6bfyc1, d6bfyc3, d6bfyd1, d6bfyd3, d6bfye1, d6bfye3, d6bfyf1, d6bfyf3
automated match to d2fymc1
complexed with 2pg, gol, mg, so4

Domain d6bfyd2: 6bfy D:140-430 [359697]
Other proteins in same PDB: d6bfya1, d6bfya3, d6bfyb1, d6bfyb3, d6bfyc1, d6bfyc3, d6bfyd1, d6bfyd3, d6bfye1, d6bfye3, d6bfyf1, d6bfyf3
automated match to d2fymc1
complexed with 2pg, gol, mg, so4

Domain d6bfye2: 6bfy E:140-430 [359717]
Other proteins in same PDB: d6bfya1, d6bfya3, d6bfyb1, d6bfyb3, d6bfyc1, d6bfyc3, d6bfyd1, d6bfyd3, d6bfye1, d6bfye3, d6bfyf1, d6bfyf3
automated match to d2fymc1
complexed with 2pg, gol, mg, so4

Domain d6bfyf2: 6bfy F:140-431 [359538]
Other proteins in same PDB: d6bfya1, d6bfya3, d6bfyb1, d6bfyb3, d6bfyc1, d6bfyc3, d6bfyd1, d6bfyd3, d6bfye1, d6bfye3, d6bfyf1, d6bfyf3
automated match to d2fymc1
complexed with 2pg, gol, mg, so4

Domains for 6bfz:

Domain d6bfza2: 6bfz A:140-431 [359523]
Other proteins in same PDB: d6bfza1, d6bfza3, d6bfzb1, d6bfzb3, d6bfzc1, d6bfzc3, d6bfzd1, d6bfzd3, d6bfze1, d6bfze3, d6bfzf1, d6bfzf3
automated match to d2fymc1
complexed with 2pg, gol, mes, mg, pep, so4

Domain d6bfzb2: 6bfz B:140-431 [359505]
Other proteins in same PDB: d6bfza1, d6bfza3, d6bfzb1, d6bfzb3, d6bfzc1, d6bfzc3, d6bfzd1, d6bfzd3, d6bfze1, d6bfze3, d6bfzf1, d6bfzf3
automated match to d2fymc1
complexed with 2pg, gol, mes, mg, pep, so4

Domain d6bfzc2: 6bfz C:140-431 [359634]
Other proteins in same PDB: d6bfza1, d6bfza3, d6bfzb1, d6bfzb3, d6bfzc1, d6bfzc3, d6bfzd1, d6bfzd3, d6bfze1, d6bfze3, d6bfzf1, d6bfzf3
automated match to d2fymc1
complexed with 2pg, gol, mes, mg, pep, so4

Domain d6bfzd2: 6bfz D:140-431 [359708]
Other proteins in same PDB: d6bfza1, d6bfza3, d6bfzb1, d6bfzb3, d6bfzc1, d6bfzc3, d6bfzd1, d6bfzd3, d6bfze1, d6bfze3, d6bfzf1, d6bfzf3
automated match to d2fymc1
complexed with 2pg, gol, mes, mg, pep, so4

Domain d6bfze2: 6bfz E:140-431 [359677]
Other proteins in same PDB: d6bfza1, d6bfza3, d6bfzb1, d6bfzb3, d6bfzc1, d6bfzc3, d6bfzd1, d6bfzd3, d6bfze1, d6bfze3, d6bfzf1, d6bfzf3
automated match to d2fymc1
complexed with 2pg, gol, mes, mg, pep, so4

Domain d6bfzf2: 6bfz F:140-430 [359701]
Other proteins in same PDB: d6bfza1, d6bfza3, d6bfzb1, d6bfzb3, d6bfzc1, d6bfzc3, d6bfzd1, d6bfzd3, d6bfze1, d6bfze3, d6bfzf1, d6bfzf3
automated match to d2fymc1
complexed with 2pg, gol, mes, mg, pep, so4

Domains for 6npf:

Domain d6npfa2: 6npf A:140-430 [377435]
Other proteins in same PDB: d6npfa1, d6npfa3, d6npfb1, d6npfb3, d6npfc1, d6npfc3, d6npfd1, d6npfd3, d6npfe1, d6npfe3, d6npff1, d6npff3
automated match to d2fymc1
complexed with gol, kvm, mg, so4, tla

Domain d6npfb2: 6npf B:140-430 [377440]
Other proteins in same PDB: d6npfa1, d6npfa3, d6npfb1, d6npfb3, d6npfc1, d6npfc3, d6npfd1, d6npfd3, d6npfe1, d6npfe3, d6npff1, d6npff3
automated match to d2fymc1
complexed with gol, kvm, mg, so4, tla

Domain d6npfc2: 6npf C:140-430 [377447]
Other proteins in same PDB: d6npfa1, d6npfa3, d6npfb1, d6npfb3, d6npfc1, d6npfc3, d6npfd1, d6npfd3, d6npfe1, d6npfe3, d6npff1, d6npff3
automated match to d2fymc1
complexed with gol, kvm, mg, so4, tla

Domain d6npfd2: 6npf D:140-430 [377454]
Other proteins in same PDB: d6npfa1, d6npfa3, d6npfb1, d6npfb3, d6npfc1, d6npfc3, d6npfd1, d6npfd3, d6npfe1, d6npfe3, d6npff1, d6npff3
automated match to d2fymc1
complexed with gol, kvm, mg, so4, tla

Domain d6npfe2: 6npf E:140-430 [377429]
Other proteins in same PDB: d6npfa1, d6npfa3, d6npfb1, d6npfb3, d6npfc1, d6npfc3, d6npfd1, d6npfd3, d6npfe1, d6npfe3, d6npff1, d6npff3
automated match to d2fymc1
complexed with gol, kvm, mg, so4, tla

Domain d6npff2: 6npf F:140-430 [377459]
Other proteins in same PDB: d6npfa1, d6npfa3, d6npfb1, d6npfb3, d6npfc1, d6npfc3, d6npfd1, d6npfd3, d6npfe1, d6npfe3, d6npff1, d6npff3
automated match to d2fymc1
complexed with gol, kvm, mg, so4, tla

Escherichia coli [TaxId:83333] [337032] (1 PDB entry)
- Domains for 5ohg:
  1. Domain d5ohga2: 5ohg A:141-431 [337036]
    Other proteins in same PDB: d5ohga1, d5ohgb1, d5ohgh1, d5ohgi1
    automated match to d2fymc1
    complexed with mg, na, po4
  2. Domain d5ohgb2: 5ohg B:141-432 [337063]
    Other proteins in same PDB: d5ohga1, d5ohgb1, d5ohgh1, d5ohgi1
    automated match to d2fymc1
    complexed with mg, na, po4
  3. Domain d5ohgh2: 5ohg H:141-431 [337053]
    Other proteins in same PDB: d5ohga1, d5ohgb1, d5ohgh1, d5ohgi1
    automated match to d2fymc1
    complexed with mg, na, po4
  4. Domain d5ohgi2: 5ohg I:141-431 [337033]
    Other proteins in same PDB: d5ohga1, d5ohgb1, d5ohgh1, d5ohgi1
    automated match to d2fymc1
    complexed with mg, na, po4
Fruit fly (Drosophila melanogaster) [TaxId:7227] [333608] (1 PDB entry)
- Domain for 5wro:
  - Domain d5wroa2: 5wro A:208-500 [333609]
    Other proteins in same PDB: d5wroa1, d5wroa3
    automated match to d2xsxa2
    complexed with cd, cl, co, gol, so4
Human (Homo sapiens) [TaxId:9606] [225520] (3 PDB entries)
1. Domains for 2psn:
  1. Domain d2psna2: 2psn A:140-432 [205629]
    Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
    automated match to d1pdza1
    complexed with mg, po4
  2. Domain d2psnb2: 2psn B:140-432 [205631]
    Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
    automated match to d1pdza1
    complexed with mg, po4
  3. Domain d2psnc2: 2psn C:140-433 [205633]
    Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
    automated match to d1pdza1
    complexed with mg, po4
  4. Domain d2psnd2: 2psn D:140-431 [205635]
    Other proteins in same PDB: d2psna1, d2psnb1, d2psnc1, d2psnd1
    automated match to d1pdza1
    complexed with mg, po4
2. Domains for 2xsx:
  1. Domain d2xsxa2: 2xsx A:141-434 [207331]
    Other proteins in same PDB: d2xsxa1, d2xsxb1, d2xsxb3
    automated match to d1pdza1
    complexed with edo, mg, po4
  2. Domain d2xsxb2: 2xsx B:141-434 [207333]
    Other proteins in same PDB: d2xsxa1, d2xsxb1, d2xsxb3
    automated match to d1pdza1
    complexed with edo, mg, po4
3. Domains for 3b97:
  1. Domain d3b97a2: 3b97 A:140-432 [208563]
    Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
    automated match to d1pdza1
    complexed with mg, so4
  2. Domain d3b97b2: 3b97 B:140-432 [208565]
    Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
    automated match to d1pdza1
    complexed with mg, so4
  3. Domain d3b97c2: 3b97 C:140-433 [208567]
    Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
    automated match to d1pdza1
    complexed with mg, so4
  4. Domain d3b97d2: 3b97 D:140-431 [208569]
    Other proteins in same PDB: d3b97a1, d3b97b1, d3b97c1, d3b97d1
    automated match to d1pdza1
    complexed with mg, so4
Streptococcus suis [TaxId:1307] [226502] (1 PDB entry)
- Domains for 4ewj:
  1. Domain d4ewja2: 4ewj A:138-433 [220894]
    Other proteins in same PDB: d4ewja1, d4ewjb1
    automated match to d1w6ta1
  2. Domain d4ewjb2: 4ewj B:138-433 [220896]
    Other proteins in same PDB: d4ewja1, d4ewjb1
    automated match to d1w6ta1
Trypanosoma cruzi [TaxId:353153] [226458] (1 PDB entry)
- Domain for 4g7f:
  - Domain d4g7fa2: 4g7f A:139-429 [221743]
    Other proteins in same PDB: d4g7fa1
    automated match to d1oepa1
    complexed with edo, mg

More info for Protein automated matches from c.1.11.1: Enolase

Timeline for Protein automated matches from c.1.11.1: Enolase:

Protein automated matches from c.1.11.1: Enolase first appeared in SCOPe 2.03
Protein automated matches from c.1.11.1: Enolase appears in SCOPe 2.07