Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1689992Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1692262Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1692263Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1692264Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
  6. 1692551Protein automated matches [226972] (8 species)
    not a true protein

Species:

  1. 1692552Escherichia coli K-12 [TaxId:83333] [225830] (1 PDB entry)
  2. 1692555Escherichia coli [TaxId:562] [225831] (3 PDB entries)
    1. Domain for 3k5l:
    2. Domain for 3k5m:
    3. Domains for 3k5n:
      1. 1692558Domain d3k5na2: 3k5n A:390-783 [247114]
        Other proteins in same PDB: d3k5na1, d3k5nb1
        automated match to d1q8ia2
        protein/DNA complex
      2. 1692559Domain d3k5nb2: 3k5n B:390-769 [247116]
        Other proteins in same PDB: d3k5na1, d3k5nb1
        automated match to d1q8ia2
        protein/DNA complex
  3. 1692560Geobacillus kaustophilus [TaxId:1462] [233275] (8 PDB entries)
    1. Domains for 3pv8:
      1. 1692561Domain d3pv8a2: 3pv8 A:469-876 [233277]
        Other proteins in same PDB: d3pv8a1, d3pv8d1
        automated match to d2hhva2
        protein/DNA complex; complexed with d3t, mg, so4
      2. 1692562Domain d3pv8d2: 3pv8 D:469-876 [233276]
        Other proteins in same PDB: d3pv8a1, d3pv8d1
        automated match to d2hhva2
        protein/DNA complex; complexed with d3t, mg, so4
    2. Domains for 3px0:
      1. 1692575Domain d3px0a2: 3px0 A:469-876 [248706]
        Other proteins in same PDB: d3px0a1, d3px0d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dcp, mn, so4
      2. 1692576Domain d3px0d2: 3px0 D:469-876 [248708]
        Other proteins in same PDB: d3px0a1, d3px0d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dcp, mn, so4
    3. Domains for 3px4:
      1. 1692573Domain d3px4a2: 3px4 A:469-876 [248710]
        Other proteins in same PDB: d3px4a1, d3px4d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dct, mg, so4
      2. 1692574Domain d3px4d2: 3px4 D:469-876 [248712]
        Other proteins in same PDB: d3px4a1, d3px4d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dct, mg, so4
    4. Domains for 3px6:
      1. 1692563Domain d3px6a2: 3px6 A:469-876 [248714]
        Other proteins in same PDB: d3px6a1, d3px6d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dct, mn, so4
      2. 1692564Domain d3px6d2: 3px6 D:469-876 [248716]
        Other proteins in same PDB: d3px6a1, d3px6d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dct, mn, so4
    5. Domains for 4dse:
      1. 1692571Domain d4dsea2: 4dse A:469-876 [251538]
        Other proteins in same PDB: d4dsea1, d4dsed1
        automated match to d3pv8d2
        protein/DNA complex; complexed with ctp, so4
      2. 1692572Domain d4dsed2: 4dse D:469-876 [251540]
        Other proteins in same PDB: d4dsea1, d4dsed1
        automated match to d3pv8d2
        protein/DNA complex; complexed with ctp, so4
    6. Domains for 4dsf:
      1. 1692569Domain d4dsfa2: 4dsf A:469-876 [251542]
        Other proteins in same PDB: d4dsfa1, d4dsfd1
        automated match to d3pv8d2
        protein/DNA complex; complexed with ctp, so4
      2. 1692570Domain d4dsfd2: 4dsf D:469-876 [251544]
        Other proteins in same PDB: d4dsfa1, d4dsfd1
        automated match to d3pv8d2
        protein/DNA complex; complexed with ctp, so4
    7. Domains for 4ez6:
      1. 1692567Domain d4ez6a2: 4ez6 A:469-876 [251826]
        Other proteins in same PDB: d4ez6a1, d4ez6d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dg3, mpd, so4
      2. 1692568Domain d4ez6d2: 4ez6 D:469-876 [251828]
        Other proteins in same PDB: d4ez6a1, d4ez6d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with dg3, mpd, so4
    8. Domains for 4ez9:
      1. 1692565Domain d4ez9a2: 4ez9 A:469-875 [251830]
        Other proteins in same PDB: d4ez9a1, d4ez9d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with d3t, mpd, so4
      2. 1692566Domain d4ez9d2: 4ez9 D:469-876 [251832]
        Other proteins in same PDB: d4ez9a1, d4ez9d1
        automated match to d3pv8d2
        protein/DNA complex; complexed with d3t, mpd, so4
  4. 1692577Geobacillus kaustophilus [TaxId:235909] [226400] (6 PDB entries)
    1. Domains for 4dqp:
      1. 1692585Domain d4dqpa2: 4dqp A:469-876 [219947]
        Other proteins in same PDB: d4dqpa1, d4dqpd1
        automated match to d2hhva2
        protein/DNA complex; complexed with dct, mg, so4
      2. 1692586Domain d4dqpd2: 4dqp D:469-876 [219949]
        Other proteins in same PDB: d4dqpa1, d4dqpd1
        automated match to d2hhva2
        protein/DNA complex; complexed with dct, mg, so4
    2. Domains for 4dqq:
      1. 1692578Domain d4dqqa2: 4dqq A:469-876 [219951]
        Other proteins in same PDB: d4dqqa1, d4dqqd1
        automated match to d2hhva2
        protein/DNA complex; complexed with ctp, mes, mg, mpd, so4
      2. 1692579Domain d4dqqd2: 4dqq D:469-876 [219953]
        Other proteins in same PDB: d4dqqa1, d4dqqd1
        automated match to d2hhva2
        protein/DNA complex; complexed with ctp, mes, mg, mpd, so4
    3. Domains for 4dqr:
      1. 1692587Domain d4dqra2: 4dqr A:469-876 [219955]
        Other proteins in same PDB: d4dqra1, d4dqrd1
        automated match to d2hhva2
        protein/DNA complex; complexed with ctp, mn, mpd, so4
      2. 1692588Domain d4dqrd2: 4dqr D:469-876 [219957]
        Other proteins in same PDB: d4dqra1, d4dqrd1
        automated match to d2hhva2
        protein/DNA complex; complexed with ctp, mn, mpd, so4
    4. Domain for 4dqs:
    5. Domains for 4ds4:
      1. 1692581Domain d4ds4a2: 4ds4 A:469-876 [219991]
        Other proteins in same PDB: d4ds4a1, d4ds4d1
        automated match to d2hhva2
        protein/DNA complex; complexed with so4
      2. 1692582Domain d4ds4d2: 4ds4 D:469-876 [219993]
        Other proteins in same PDB: d4ds4a1, d4ds4d1
        automated match to d2hhva2
        protein/DNA complex; complexed with so4
    6. Domains for 4ds5:
      1. 1692583Domain d4ds5a2: 4ds5 A:469-876 [219995]
        Other proteins in same PDB: d4ds5a1, d4ds5d1
        automated match to d2hhva2
        protein/DNA complex; complexed with so4
      2. 1692584Domain d4ds5d2: 4ds5 D:469-876 [219997]
        Other proteins in same PDB: d4ds5a1, d4ds5d1
        automated match to d2hhva2
        protein/DNA complex; complexed with so4
  5. 1692589Geobacillus sp. [TaxId:129337] [233671] (4 PDB entries)
    1. Domain for 3tan:
    2. Domain for 3tap:
    3. Domain for 3taq:
    4. Domain for 3tar:
  6. 1692594Geobacillus stearothermophilus [TaxId:1422] [261825] (1 PDB entry)
  7. Thermococcus gorgonarius [TaxId:71997] [225934] (3 PDB entries)
    1. Domain for 2vwj:
    2. Domain for 2vwk:
    3. Domain for 2xhb:
  8. 1692600Thermococcus kodakarensis [TaxId:69014] [226699] (1 PDB entry)

More info for Protein automated matches from e.8.1.1: DNA polymerase I

Timeline for Protein automated matches from e.8.1.1: DNA polymerase I: