SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008141Fold a.121: Tetracyclin repressor-like, C-terminal domain [48497] (1 superfamily)
    multihelical; interlocked (homo)dimer
  4. 2008142Superfamily a.121.1: Tetracyclin repressor-like, C-terminal domain [48498] (2 families) (S)
  5. 2008470Family a.121.1.0: automated matches [227226] (1 protein)
    not a true family
  6. 2008471Protein automated matches [226967] (5 species)
    not a true protein

Species:

  1. 2008472Escherichia coli [TaxId:562] [226545] (1 PDB entry)
  2. 2008474Pasteurella multocida [TaxId:747] [225421] (1 PDB entry)
  3. 2268223Proteus mirabilis [TaxId:584] [311529] (1 PDB entry)
  4. 2268320Mannheimia haemolytica [TaxId:75985] [311626] (1 PDB entry)
  5. 2287029Bacillus halodurans [TaxId:272558] [330330] (2 PDB entries)
    1. Domains for 5gp9:
      1. 2287056Domain d5gp9b2: 5gp9 B:79-194 [330357]
        Other proteins in same PDB: d5gp9a1, d5gp9b1
        automated match to d1vi0a2
        complexed with gol, mg, plm
      2. 2287083Domain d5gp9a2: 5gp9 A:79-195 [330384]
        Other proteins in same PDB: d5gp9a1, d5gp9b1
        automated match to d1vi0a2
        complexed with gol, mg, plm
    2. Domains for 5gpa:
      1. 2287030Domain d5gpaa2: 5gpa A:79-195 [330331]
        Other proteins in same PDB: d5gpaa1, d5gpab1
        automated match to d1vi0a2
        complexed with gol, mg
      2. 2287035Domain d5gpab2: 5gpa B:79-193 [330336]
        Other proteins in same PDB: d5gpaa1, d5gpab1
        automated match to d1vi0a2
        complexed with gol, mg

More info for Protein automated matches from a.121.1.0: automated matches

Timeline for Protein automated matches from a.121.1.0: automated matches: