SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class b: All beta proteins [48724] (178 folds)
Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
barrel, closed; n=6, S=10; greek-key
Superfamily b.43.3: Translation proteins [50447] (7 families)
Family b.43.3.0: automated matches [227211] (1 protein)
not a true family
Protein automated matches [226946] (29 species)
not a true protein

Species:

Acinetobacter calcoaceticus [TaxId:471] [225296] (1 PDB entry)
- Domain for 2qgg:
  - Domain d2qgga1: 2qgg A:6-103 [205810]
    Other proteins in same PDB: d2qgga2
    automated match to d2f1la2
    complexed with k, unl

Aeropyrum pernix [TaxId:272557] [256138] (2 PDB entries)

Domain for 3vmf:
- Domain d3vmfa2: 3vmf A:228-322 [250617]
  Other proteins in same PDB: d3vmfa1, d3vmfa3
  automated match to d1skqa1
  complexed with gtp, mg, so4

Domain for 3wxm:

Domain d3wxma2: 3wxm A:228-322 [259636]
Other proteins in same PDB: d3wxma1, d3wxma3, d3wxmc1, d3wxmc3, d3wxme1, d3wxme3, d3wxmg1, d3wxmg3
automated match to d3agja2
protein/RNA complex; complexed with gtp, mg

Aeropyrum pernix [TaxId:56636] [255747] (2 PDB entries)
1. Domains for 3agj:
  1. Domain d3agja5: 3agj A:228-322 [304952]
    Other proteins in same PDB: d3agja4, d3agja6, d3agjc4, d3agjc6, d3agje4, d3agje6, d3agjg4, d3agjg6
    automated match to d3vmfa2
    complexed with gtp, mg
  2. Domain d3agjc5: 3agj C:228-322 [304955]
    Other proteins in same PDB: d3agja4, d3agja6, d3agjc4, d3agjc6, d3agje4, d3agje6, d3agjg4, d3agjg6
    automated match to d3vmfa2
    complexed with gtp, mg
  3. Domain d3agje5: 3agj E:228-322 [304958]
    Other proteins in same PDB: d3agja4, d3agja6, d3agjc4, d3agjc6, d3agje4, d3agje6, d3agjg4, d3agjg6
    automated match to d3vmfa2
    complexed with gtp, mg
  4. Domain d3agjg5: 3agj G:228-322 [304961]
    Other proteins in same PDB: d3agja4, d3agja6, d3agjc4, d3agjc6, d3agje4, d3agje6, d3agjg4, d3agjg6
    automated match to d3vmfa2
    complexed with gtp, mg
2. Domains for 3wxm:
  1. Domain d3wxmc2: 3wxm C:228-322 [262482]
    Other proteins in same PDB: d3wxma1, d3wxma3, d3wxmc1, d3wxmc3, d3wxme1, d3wxme3, d3wxmg1, d3wxmg3
    protein/RNA complex; complexed with gtp, mg
  2. Domain d3wxme2: 3wxm E:228-322 [262485]
    Other proteins in same PDB: d3wxma1, d3wxma3, d3wxmc1, d3wxmc3, d3wxme1, d3wxme3, d3wxmg1, d3wxmg3
    protein/RNA complex; complexed with gtp, mg
  3. Domain d3wxmg2: 3wxm G:228-322 [262488]
    Other proteins in same PDB: d3wxma1, d3wxma3, d3wxmc1, d3wxmc3, d3wxme1, d3wxme3, d3wxmg1, d3wxmg3
    protein/RNA complex; complexed with gtp, mg
Bacillus subtilis [TaxId:224308] [333353] (1 PDB entry)
- Domain for 5vh6:
  - Domain d5vh6a2: 5vh6 A:281-400 [333354]
    Other proteins in same PDB: d5vh6a1, d5vh6a3
    automated match to d2bv3a1
    complexed with cl

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255011] (4 PDB entries)

Domains for 1zm2:

Domain d1zm2a1: 1zm2 A:344-481 [125280]
Other proteins in same PDB: d1zm2a2, d1zm2a3, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c2, d1zm2c3, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e2, d1zm2e3, d1zm2e4, d1zm2e5, d1zm2f_
automated match to d1n0ua1
complexed with apr

Domain d1zm2c1: 1zm2 C:344-481 [125286]
Other proteins in same PDB: d1zm2a2, d1zm2a3, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c2, d1zm2c3, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e2, d1zm2e3, d1zm2e4, d1zm2e5, d1zm2f_
automated match to d1n0ua1
complexed with apr

Domain d1zm2e1: 1zm2 E:344-481 [125292]
Other proteins in same PDB: d1zm2a2, d1zm2a3, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c2, d1zm2c3, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e2, d1zm2e3, d1zm2e4, d1zm2e5, d1zm2f_
automated match to d1n0ua1
complexed with apr

Domains for 1zm3:

Domain d1zm3a1: 1zm3 A:344-481 [125298]
Other proteins in same PDB: d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5, d1zm3f_
automated match to d1n0ua1

Domain d1zm3c1: 1zm3 C:344-481 [125304]
Other proteins in same PDB: d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5, d1zm3f_
automated match to d1n0ua1

Domain d1zm3e1: 1zm3 E:344-481 [125310]
Other proteins in same PDB: d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5, d1zm3f_
automated match to d1n0ua1

Domain for 2e1r:
- Domain d2e1ra1: 2e1r A:344-481 [131966]
  Other proteins in same PDB: d2e1ra2, d2e1ra3, d2e1ra4, d2e1ra5
  automated match to d1n0ua1
  complexed with gdp, sod

Domains for 2zit:

Domain d2zita2: 2zit A:344-481 [239065]
Other proteins in same PDB: d2zita1, d2zita3, d2zita4, d2zita5, d2zitb2, d2zitb3, d2zitc1, d2zitc3, d2zitc4, d2zitc5, d2zitd2, d2zitd3, d2zite1, d2zite3, d2zite4, d2zite5, d2zitf2, d2zitf3
automated match to d1n0ua1
protein/RNA complex; complexed with nad

Domain d2zitc2: 2zit C:344-481 [239070]
Other proteins in same PDB: d2zita1, d2zita3, d2zita4, d2zita5, d2zitb2, d2zitb3, d2zitc1, d2zitc3, d2zitc4, d2zitc5, d2zitd2, d2zitd3, d2zite1, d2zite3, d2zite4, d2zite5, d2zitf2, d2zitf3
automated match to d1n0ua1
protein/RNA complex; complexed with nad

Domain d2zite2: 2zit E:344-481 [239075]
Other proteins in same PDB: d2zita1, d2zita3, d2zita4, d2zita5, d2zitb2, d2zitb3, d2zitc1, d2zitc3, d2zitc4, d2zitc5, d2zitd2, d2zitd3, d2zite1, d2zite3, d2zite4, d2zite5, d2zitf2, d2zitf3
automated match to d1n0ua1
protein/RNA complex; complexed with nad

Chaetomium thermophilum [TaxId:209285] [260029] (2 PDB entries)
1. Domains for 4tmz:
  1. Domain d4tmza2: 4tmz A:745-845 [260032]
    Other proteins in same PDB: d4tmza1, d4tmzb1
    automated match to d1g7sa1
    complexed with cl, gol, gsp, k, mg
  2. Domain d4tmzb2: 4tmz B:745-846 [260030]
    Other proteins in same PDB: d4tmza1, d4tmzb1
    automated match to d1g7sa1
    complexed with cl, gol, gsp, k, mg
2. Domains for 4tn1:
  1. Domain d4tn1a2: 4tn1 A:745-845 [261155]
    Other proteins in same PDB: d4tn1a1, d4tn1b1
    automated match to d1g7sa1
    complexed with gsp, mg; mutant
  2. Domain d4tn1b2: 4tn1 B:745-846 [260035]
    Other proteins in same PDB: d4tn1a1, d4tn1b1
    automated match to d1g7sa1
    complexed with gsp, mg; mutant
Enterococcus faecalis [TaxId:226185] [341796] (1 PDB entry)
- Domains for 6bk7:
  1. Domain d6bk7a2: 6bk7 A:281-404 [341798]
    Other proteins in same PDB: d6bk7a1, d6bk7b1
    automated match to d2bv3a1
    complexed with na
  2. Domain d6bk7b2: 6bk7 B:281-404 [341799]
    Other proteins in same PDB: d6bk7a1, d6bk7b1
    automated match to d2bv3a1
    complexed with na
Escherichia coli K-12 [TaxId:83333] [256111] (3 PDB entries)
1. Domain for 3u2q:
  - Domain d3u2qa2: 3u2q A:205-296 [250073]
    Other proteins in same PDB: d3u2qa1, d3u2qa3
    automated match to d1efca1
    complexed with gdp, mg
2. Domains for 3u6b:
  1. Domain d3u6ba2: 3u6b A:205-296 [250088]
    Other proteins in same PDB: d3u6ba1, d3u6ba3, d3u6bb1, d3u6bb3
    automated match to d1efca1
    complexed with gdp, mg
  2. Domain d3u6bb2: 3u6b B:205-296 [250091]
    Other proteins in same PDB: d3u6ba1, d3u6ba3, d3u6bb1, d3u6bb3
    automated match to d1efca1
    complexed with gdp, mg
3. Domains for 3u6k:
  1. Domain d3u6ka2: 3u6k A:205-296 [250096]
    Other proteins in same PDB: d3u6ka1, d3u6ka3, d3u6kb1, d3u6kb3
    automated match to d1efca1
    complexed with gdp, mg
  2. Domain d3u6kb2: 3u6k B:205-296 [250099]
    Other proteins in same PDB: d3u6ka1, d3u6ka3, d3u6kb1, d3u6kb3
    automated match to d1efca1
    complexed with gdp, mg

Escherichia coli [TaxId:316385] [272315] (3 PDB entries)

Domains for 4pc1:

Domain d4pc1a2: 4pc1 A:205-296 [272326]
Other proteins in same PDB: d4pc1a1, d4pc1a3, d4pc1b1, d4pc1b3, d4pc1c1, d4pc1c2, d4pc1c3, d4pc1d1, d4pc1d2, d4pc1d3
automated match to d1efca1
complexed with gol, pb, po4, trs

Domain d4pc1b2: 4pc1 B:205-296 [272323]
Other proteins in same PDB: d4pc1a1, d4pc1a3, d4pc1b1, d4pc1b3, d4pc1c1, d4pc1c2, d4pc1c3, d4pc1d1, d4pc1d2, d4pc1d3
automated match to d1efca1
complexed with gol, pb, po4, trs

Domains for 4pc2:

Domain d4pc2a2: 4pc2 A:205-296 [272340]
Other proteins in same PDB: d4pc2a1, d4pc2a3, d4pc2b1, d4pc2b3, d4pc2c1, d4pc2c2, d4pc2c3, d4pc2d1, d4pc2d2, d4pc2d3
automated match to d1efca1
complexed with cl, gdp, gol

Domain d4pc2b2: 4pc2 B:205-296 [272343]
Other proteins in same PDB: d4pc2a1, d4pc2a3, d4pc2b1, d4pc2b3, d4pc2c1, d4pc2c2, d4pc2c3, d4pc2d1, d4pc2d2, d4pc2d3
automated match to d1efca1
complexed with cl, gdp, gol

Domains for 4pc6:

Domain d4pc6a2: 4pc6 A:205-296 [272329]
Other proteins in same PDB: d4pc6a1, d4pc6a3, d4pc6b1, d4pc6b3, d4pc6c1, d4pc6c2, d4pc6c3, d4pc6d1, d4pc6d2, d4pc6d3
automated match to d1efca1
complexed with gnp, gol

Domain d4pc6b2: 4pc6 B:205-296 [272316]
Other proteins in same PDB: d4pc6a1, d4pc6a3, d4pc6b1, d4pc6b3, d4pc6c1, d4pc6c2, d4pc6c3, d4pc6d1, d4pc6d2, d4pc6d3
automated match to d1efca1
complexed with gnp, gol

Escherichia coli [TaxId:331112] [343071] (2 PDB entries)
1. Domains for 5mi3:
  1. Domain d5mi3a2: 5mi3 A:206-297 [343118]
    Other proteins in same PDB: d5mi3a1, d5mi3a3, d5mi3b1, d5mi3b3
    automated match to d1efca1
    complexed with gdp, mg
  2. Domain d5mi3b2: 5mi3 B:206-297 [343072]
    Other proteins in same PDB: d5mi3a1, d5mi3a3, d5mi3b1, d5mi3b3
    automated match to d1efca1
    complexed with gdp, mg
2. Domains for 5opd:
  1. Domain d5opda2: 5opd A:206-297 [356865]
    Other proteins in same PDB: d5opda1, d5opda3, d5opdb1, d5opdb3
    automated match to d1efca1
    complexed with gol, gtp, iod, mg, na
  2. Domain d5opdb2: 5opd B:206-297 [356931]
    Other proteins in same PDB: d5opda1, d5opda3, d5opdb1, d5opdb3
    automated match to d1efca1
    complexed with gol, gtp, iod, mg, na
Escherichia coli [TaxId:469008] [257409] (2 PDB entries)
1. Domain for 4p3y:
  - Domain d4p3ya2: 4p3y A:206-297 [257410]
    Other proteins in same PDB: d4p3ya1, d4p3ya3, d4p3yb1, d4p3yb2
    automated match to d1efca1
    complexed with gdp, gol, mg
2. Domain for 5i4q:
  - Domain d5i4qc1: 5i4q C:209-297 [336428]
    Other proteins in same PDB: d5i4qc2
    automated match to d1efca1
    complexed with cl, so4

Escherichia coli [TaxId:83333] [272303] (1 PDB entry)

Domains for 4pc3:

Domain d4pc3a2: 4pc3 A:205-296 [272311]
Other proteins in same PDB: d4pc3a1, d4pc3a3, d4pc3b1, d4pc3b3, d4pc3c1, d4pc3c2, d4pc3c3, d4pc3d1, d4pc3d2, d4pc3d3
automated match to d1efca1
complexed with gdp, gol

Domain d4pc3b2: 4pc3 B:205-296 [272304]
Other proteins in same PDB: d4pc3a1, d4pc3a3, d4pc3b1, d4pc3b3, d4pc3c1, d4pc3c2, d4pc3c3, d4pc3d1, d4pc3d2, d4pc3d3
automated match to d1efca1
complexed with gdp, gol

Haemophilus influenzae [TaxId:71421] [340216] (1 PDB entry)
- Domain for 6b8d:
  - Domain d6b8da2: 6b8d A:289-405 [340217]
    Other proteins in same PDB: d6b8da1
    automated match to d2efga1
    complexed with cl
Haemophilus influenzae [TaxId:727] [225682] (1 PDB entry)
- Domain for 3h9n:
  - Domain d3h9na1: 3h9n A:8-101 [210917]
    Other proteins in same PDB: d3h9na2, d3h9na3
    automated match to d2f1la2
    complexed with so4

Homo sapiens [TaxId:9606] [365900] (3 PDB entries)

Domain for 6icz:

Domain d6iczc2: 6icz C:440-581 [365948]
Other proteins in same PDB: d6icza_, d6iczb_, d6iczc1, d6iczc3, d6iczc4, d6iczc5, d6iczd_, d6icze_, d6iczf_, d6iczg_, d6iczh_, d6iczi_, d6iczj_, d6iczk_, d6iczl_, d6iczm_, d6iczn_, d6iczo_, d6iczp_, d6iczq1, d6iczq2, d6iczr1, d6iczr2, d6iczs_, d6iczt_, d6iczu1, d6iczu2, d6iczv_, d6iczy_
automated match to d3jb9b2
complexed with atp, gtp, i6p, mg, zn

Domain for 6id0:

Domain d6id0c2: 6id0 C:440-581 [365901]
Other proteins in same PDB: d6id0a_, d6id0b_, d6id0c1, d6id0c3, d6id0c4, d6id0c5, d6id0d_, d6id0e_, d6id0f_, d6id0g_, d6id0h_, d6id0i_, d6id0j_, d6id0k_, d6id0l_, d6id0m_, d6id0n_, d6id0o_, d6id0p_, d6id0q1, d6id0q2, d6id0r1, d6id0r2, d6id0s_, d6id0t_, d6id0y_
automated match to d3jb9b2
complexed with gtp, i6p, mg, zn

Domain for 6id1:

Domain d6id1c2: 6id1 C:440-581 [365927]
Other proteins in same PDB: d6id1a_, d6id1b_, d6id1c1, d6id1c3, d6id1c4, d6id1c5, d6id1d_, d6id1e_, d6id1f_, d6id1g_, d6id1h_, d6id1i_, d6id1j_, d6id1k_, d6id1l_, d6id1m_, d6id1n_, d6id1o_, d6id1p_, d6id1q1, d6id1q2, d6id1r1, d6id1r2, d6id1s_, d6id1t_, d6id1y_
automated match to d3jb9b2
complexed with gtp, i6p, mg, zn

Legionella pneumophila [TaxId:272624] [326819] (1 PDB entry)
- Domain for 5ty0:
  - Domain d5ty0a2: 5ty0 A:287-404 [326820]
    Other proteins in same PDB: d5ty0a1
    automated match to d2bv3a1
    complexed with bgc, na

Methanococcus maripaludis [TaxId:39152] [311184] (2 PDB entries)

Domains for 1wb1:

Domain d1wb1a6: 1wb1 A:180-271 [303262]
Other proteins in same PDB: d1wb1a5, d1wb1a7, d1wb1a9, d1wb1b4, d1wb1b6, d1wb1c5, d1wb1c7, d1wb1c9, d1wb1d4, d1wb1d6
automated match to d4ac9a1
complexed with dxc, gdp, mg, so4

Domain d1wb1a8: 1wb1 A:388-468 [303264]
Other proteins in same PDB: d1wb1a5, d1wb1a7, d1wb1a9, d1wb1b4, d1wb1b6, d1wb1c5, d1wb1c7, d1wb1c9, d1wb1d4, d1wb1d6
automated match to d4ac9a2
complexed with dxc, gdp, mg, so4

Domain d1wb1b5: 1wb1 B:180-271 [303267]
Other proteins in same PDB: d1wb1a5, d1wb1a7, d1wb1a9, d1wb1b4, d1wb1b6, d1wb1c5, d1wb1c7, d1wb1c9, d1wb1d4, d1wb1d6
automated match to d4ac9a1
complexed with dxc, gdp, mg, so4

Domain d1wb1c6: 1wb1 C:180-271 [303270]
Other proteins in same PDB: d1wb1a5, d1wb1a7, d1wb1a9, d1wb1b4, d1wb1b6, d1wb1c5, d1wb1c7, d1wb1c9, d1wb1d4, d1wb1d6
automated match to d4ac9a1
complexed with dxc, gdp, mg, so4

Domain d1wb1c8: 1wb1 C:388-468 [303272]
Other proteins in same PDB: d1wb1a5, d1wb1a7, d1wb1a9, d1wb1b4, d1wb1b6, d1wb1c5, d1wb1c7, d1wb1c9, d1wb1d4, d1wb1d6
automated match to d4ac9a2
complexed with dxc, gdp, mg, so4

Domain d1wb1d5: 1wb1 D:180-271 [303275]
Other proteins in same PDB: d1wb1a5, d1wb1a7, d1wb1a9, d1wb1b4, d1wb1b6, d1wb1c5, d1wb1c7, d1wb1c9, d1wb1d4, d1wb1d6
automated match to d4ac9a1
complexed with dxc, gdp, mg, so4

Domains for 1wb2:

Domain d1wb2a6: 1wb2 A:180-271 [303278]
Other proteins in same PDB: d1wb2a5, d1wb2a7, d1wb2a9, d1wb2b4, d1wb2b6, d1wb2c5, d1wb2c7, d1wb2c9, d1wb2d4, d1wb2d6
automated match to d4ac9a1
complexed with dxc, so4

Domain d1wb2a8: 1wb2 A:388-468 [303280]
Other proteins in same PDB: d1wb2a5, d1wb2a7, d1wb2a9, d1wb2b4, d1wb2b6, d1wb2c5, d1wb2c7, d1wb2c9, d1wb2d4, d1wb2d6
automated match to d4ac9a2
complexed with dxc, so4

Domain d1wb2b5: 1wb2 B:180-271 [303283]
Other proteins in same PDB: d1wb2a5, d1wb2a7, d1wb2a9, d1wb2b4, d1wb2b6, d1wb2c5, d1wb2c7, d1wb2c9, d1wb2d4, d1wb2d6
automated match to d4ac9a1
complexed with dxc, so4

Domain d1wb2c6: 1wb2 C:180-271 [303286]
Other proteins in same PDB: d1wb2a5, d1wb2a7, d1wb2a9, d1wb2b4, d1wb2b6, d1wb2c5, d1wb2c7, d1wb2c9, d1wb2d4, d1wb2d6
automated match to d4ac9a1
complexed with dxc, so4

Domain d1wb2c8: 1wb2 C:388-468 [303288]
Other proteins in same PDB: d1wb2a5, d1wb2a7, d1wb2a9, d1wb2b4, d1wb2b6, d1wb2c5, d1wb2c7, d1wb2c9, d1wb2d4, d1wb2d6
automated match to d4ac9a2
complexed with dxc, so4

Domain d1wb2d5: 1wb2 D:180-271 [303291]
Other proteins in same PDB: d1wb2a5, d1wb2a7, d1wb2a9, d1wb2b4, d1wb2b6, d1wb2c5, d1wb2c7, d1wb2c9, d1wb2d4, d1wb2d6
automated match to d4ac9a1
complexed with dxc, so4

Mouse (Mus musculus) [TaxId:10090] [255093] (1 PDB entry)
- Domain for 2crv:
  - Domain d2crva1: 2crv A:8-114 [241478]
    Other proteins in same PDB: d2crva2, d2crva3
    automated match to d1d1na_

Pseudomonas putida [TaxId:160488] [256312] (2 PDB entries)

Domains for 4iw3:
1. Domain d4iw3b2: 4iw3 B:206-304 [252733]
  Other proteins in same PDB: d4iw3a_, d4iw3b1, d4iw3b3, d4iw3j_, d4iw3k1, d4iw3k3
  automated match to d1b23p1
  complexed with gdp, mg, mn, oga
2. Domain d4iw3k2: 4iw3 K:206-304 [252736]
  Other proteins in same PDB: d4iw3a_, d4iw3b1, d4iw3b3, d4iw3j_, d4iw3k1, d4iw3k3
  automated match to d1b23p1
  complexed with gdp, mg, mn, oga

Domains for 4j0q:

Domain d4j0qa2: 4j0q A:206-304 [252782]
Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
automated match to d1b23p1
complexed with gdp, mes, mg, mpd

Domain d4j0qb2: 4j0q B:206-304 [252785]
Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
automated match to d1b23p1
complexed with gdp, mes, mg, mpd

Domain d4j0qc2: 4j0q C:206-304 [252788]
Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
automated match to d1b23p1
complexed with gdp, mes, mg, mpd

Domain d4j0qd2: 4j0q D:206-304 [252791]
Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
automated match to d1b23p1
complexed with gdp, mes, mg, mpd

Domain d4j0qe2: 4j0q E:206-304 [252794]
Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
automated match to d1b23p1
complexed with gdp, mes, mg, mpd

Pyrococcus horikoshii OT3 [TaxId:70601] [268109] (2 PDB entries)
1. Domain for 3wya:
  - Domain d3wyaa2: 3wya A:216-316 [268110]
    Other proteins in same PDB: d3wyaa1, d3wyaa3
    automated match to d3vmfa2
    complexed with gdp
2. Domains for 7csl:
  1. Domain d7csla2: 7csl A:216-316 [404939]
    Other proteins in same PDB: d7csla1, d7csla3, d7cslb1, d7cslb3
    automated match to d3wyaa2
  2. Domain d7cslb2: 7csl B:216-316 [404906]
    Other proteins in same PDB: d7csla1, d7csla3, d7cslb1, d7cslb3
    automated match to d3wyaa2
Rabbit (Oryctolagus cuniculus) [TaxId:9986] [259160] (2 PDB entries)
1. Domains for 4c0s:
  1. Domain d4c0sa2: 4c0s A:243-336 [259162]
    Other proteins in same PDB: d4c0sa1, d4c0sa3, d4c0sb1, d4c0sb3
    automated match to d1f60a1
    complexed with gdp, mg
  2. Domain d4c0sb2: 4c0s B:243-336 [259163]
    Other proteins in same PDB: d4c0sa1, d4c0sa3, d4c0sb1, d4c0sb3
    automated match to d1f60a1
    complexed with gdp, mg
2. Domains for 6ra9:
  1. Domain d6ra9a2: 6ra9 A:243-336 [386888]
    Other proteins in same PDB: d6ra9a1, d6ra9a3, d6ra9b1, d6ra9b3
    automated match to d4c0sa2
    complexed with gdp, gol, gpe, pok, so4
  2. Domain d6ra9b2: 6ra9 B:243-336 [386927]
    Other proteins in same PDB: d6ra9a1, d6ra9a3, d6ra9b1, d6ra9b3
    automated match to d4c0sa2
    complexed with gdp, gol, gpe, pok, so4
Saccharolobus solfataricus [TaxId:2287] [385003] (2 PDB entries)
1. Domain for 6r8s:
  - Domain d6r8sa2: 6r8s A:207-320 [385029]
    Other proteins in same PDB: d6r8sa1, d6r8sa3
    automated match to d4m53a2
    complexed with fmt, gcp, mg
2. Domain for 6r8t:
  - Domain d6r8ta2: 6r8t A:207-320 [385004]
    Other proteins in same PDB: d6r8ta1, d6r8ta3
    automated match to d4m53a2
    complexed with fmt, gcp, mg, na

Sulfolobus solfataricus [TaxId:2287] [255782] (6 PDB entries)

Domains for 3cw2:

Domain d3cw2a2: 3cw2 A:207-320 [239189]
Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a1

Domain d3cw2b2: 3cw2 B:207-320 [239192]
Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a1

Domain d3cw2e2: 3cw2 E:207-320 [239195]
Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a1

Domain d3cw2f2: 3cw2 F:207-320 [239198]
Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
automated match to d2qn6a1

Domains for 3p3m:

Domain d3p3ma2: 3p3m A:207-320 [306207]
Other proteins in same PDB: d3p3ma1, d3p3ma3, d3p3mb1, d3p3mb3, d3p3mc1, d3p3mc3, d3p3md1, d3p3md3, d3p3me1, d3p3me3, d3p3mf1, d3p3mf3
automated match to d4m53a2
complexed with gtp

Domain d3p3mb2: 3p3m B:207-320 [306210]
Other proteins in same PDB: d3p3ma1, d3p3ma3, d3p3mb1, d3p3mb3, d3p3mc1, d3p3mc3, d3p3md1, d3p3md3, d3p3me1, d3p3me3, d3p3mf1, d3p3mf3
automated match to d4m53a2
complexed with gtp

Domain d3p3mc2: 3p3m C:207-320 [306213]
Other proteins in same PDB: d3p3ma1, d3p3ma3, d3p3mb1, d3p3mb3, d3p3mc1, d3p3mc3, d3p3md1, d3p3md3, d3p3me1, d3p3me3, d3p3mf1, d3p3mf3
automated match to d4m53a2
complexed with gtp

Domain d3p3md2: 3p3m D:207-320 [306216]
Other proteins in same PDB: d3p3ma1, d3p3ma3, d3p3mb1, d3p3mb3, d3p3mc1, d3p3mc3, d3p3md1, d3p3md3, d3p3me1, d3p3me3, d3p3mf1, d3p3mf3
automated match to d4m53a2
complexed with gtp

Domain d3p3me2: 3p3m E:207-320 [306219]
Other proteins in same PDB: d3p3ma1, d3p3ma3, d3p3mb1, d3p3mb3, d3p3mc1, d3p3mc3, d3p3md1, d3p3md3, d3p3me1, d3p3me3, d3p3mf1, d3p3mf3
automated match to d4m53a2
complexed with gtp

Domain d3p3mf2: 3p3m F:207-320 [306222]
Other proteins in same PDB: d3p3ma1, d3p3ma3, d3p3mb1, d3p3mb3, d3p3mc1, d3p3mc3, d3p3md1, d3p3md3, d3p3me1, d3p3me3, d3p3mf1, d3p3mf3
automated match to d4m53a2
complexed with gtp

Domain for 3pen:
- Domain d3pena2: 3pen A:207-320 [248473]
  Other proteins in same PDB: d3pena1, d3pena3
  automated match to d2qn6a1
  complexed with 5gp, gdp, mg
Domain for 4nbs:
- Domain d4nbsa2: 4nbs A:207-320 [260695]
  Other proteins in same PDB: d4nbsa1, d4nbsa3
  automated match to d2qn6a1
  protein/RNA complex; complexed with fmt, gcp, mg, na
Domains for 5dsz:
1. Domain d5dsza2: 5dsz A:207-320 [321701]
  Other proteins in same PDB: d5dsza1, d5dsza3, d5dszb1, d5dszb3
  automated match to d4m53a2
2. Domain d5dszb2: 5dsz B:207-320 [321741]
  Other proteins in same PDB: d5dsza1, d5dsza3, d5dszb1, d5dszb3
  automated match to d4m53a2
Domain for 6i5m:
- Domain d6i5ma2: 6i5m A:207-320 [361988]
  Other proteins in same PDB: d6i5ma1, d6i5ma3
  automated match to d4m53a2
  protein/RNA complex; complexed with fmt, gdp, mg, na

Sulfolobus solfataricus [TaxId:273057] [256084] (13 PDB entries)

Domain for 3sjy:
- Domain d3sjya2: 3sjy A:207-320 [306506]
  Other proteins in same PDB: d3sjya1, d3sjya3
  automated match to d4m53a2
  protein/RNA complex; complexed with bme, fmt, gcp, gdp, mg
Domain for 3sjz:
- Domain d3sjza2: 3sjz A:207-320 [249489]
  Other proteins in same PDB: d3sjza1, d3sjza3
  automated match to d2qn6a1
  protein/RNA complex; complexed with bme, gdp, gnp
Domain for 4qfm:
- Domain d4qfma2: 4qfm A:207-320 [273438]
  Other proteins in same PDB: d4qfma1, d4qfma3
  automated match to d4m53a2
  protein/RNA complex; complexed with fmt, gcp, mg, na
Domain for 4rcy:
- Domain d4rcya2: 4rcy A:207-320 [273171]
  Other proteins in same PDB: d4rcya1, d4rcya3
  automated match to d4m53a2
  complexed with gdp, gtp, mg, mpd
Domain for 4rcz:
- Domain d4rcza2: 4rcz A:207-320 [273168]
  Other proteins in same PDB: d4rcza1, d4rcza3
  automated match to d4m53a2
  complexed with gnp, mg, mpd
Domain for 4rd0:
- Domain d4rd0a2: 4rd0 A:207-320 [273159]
  Other proteins in same PDB: d4rd0a1, d4rd0a3
  automated match to d4m53a2
  complexed with cl, gdp, mg
Domain for 4rd1:
- Domain d4rd1a2: 4rd1 A:207-320 [273165]
  Other proteins in same PDB: d4rd1a1, d4rd1a3
  automated match to d4m53a2
  complexed with gdp, gtp, mg, mpd, po4
Domain for 4rd2:
- Domain d4rd2a2: 4rd2 A:207-320 [273162]
  Other proteins in same PDB: d4rd2a1, d4rd2a3
  automated match to d4m53a2
  complexed with gnp, mg, mpd
Domain for 4rd3:
- Domain d4rd3a2: 4rd3 A:207-320 [273156]
  Other proteins in same PDB: d4rd3a1, d4rd3a3
  automated match to d4m53a2
  complexed with gdp, mg, po4
Domain for 4rd4:
- Domain d4rd4a2: 4rd4 A:207-320 [273153]
  Other proteins in same PDB: d4rd4a1, d4rd4a3
  automated match to d4m53a2
  complexed with gnp, mg, mpd
Domain for 4rd6:
- Domain d4rd6a2: 4rd6 A:207-320 [275423]
  Other proteins in same PDB: d4rd6a1, d4rd6a3
  automated match to d4m53a2
  complexed with gdp, mg
Domain for 4rjl:
- Domain d4rjla2: 4rjl A:207-320 [279335]
  Other proteins in same PDB: d4rjla1, d4rjla3
  automated match to d4m53a2
  protein/RNA complex; complexed with 7pg, fmt, gcp, mg, na

Domains for 6h6k:

Domain d6h6ka2: 6h6k A:207-320 [367761]
Other proteins in same PDB: d6h6ka1, d6h6ka3, d6h6kb1, d6h6kb3, d6h6kc1, d6h6kc3, d6h6kd1, d6h6kd3, d6h6ke1, d6h6ke3
automated match to d4m53a2
complexed with edo, gcp, na; mutant

Domain d6h6kb2: 6h6k B:207-320 [367765]
Other proteins in same PDB: d6h6ka1, d6h6ka3, d6h6kb1, d6h6kb3, d6h6kc1, d6h6kc3, d6h6kd1, d6h6kd3, d6h6ke1, d6h6ke3
automated match to d4m53a2
complexed with edo, gcp, na; mutant

Domain d6h6kc2: 6h6k C:207-320 [367830]
Other proteins in same PDB: d6h6ka1, d6h6ka3, d6h6kb1, d6h6kb3, d6h6kc1, d6h6kc3, d6h6kd1, d6h6kd3, d6h6ke1, d6h6ke3
automated match to d4m53a2
complexed with edo, gcp, na; mutant

Domain d6h6kd2: 6h6k D:207-320 [367946]
Other proteins in same PDB: d6h6ka1, d6h6ka3, d6h6kb1, d6h6kb3, d6h6kc1, d6h6kc3, d6h6kd1, d6h6kd3, d6h6ke1, d6h6ke3
automated match to d4m53a2
complexed with edo, gcp, na; mutant

Domain d6h6ke2: 6h6k E:207-320 [367768]
Other proteins in same PDB: d6h6ka1, d6h6ka3, d6h6kb1, d6h6kb3, d6h6kc1, d6h6kc3, d6h6kd1, d6h6kd3, d6h6ke1, d6h6ke3
automated match to d4m53a2
complexed with edo, gcp, na; mutant

Thermotoga neapolitana [TaxId:309803] [351492] (1 PDB entry)

Domains for 5w75:

Domain d5w75a2: 5w75 A:203-301 [351612]
Other proteins in same PDB: d5w75a1, d5w75a3, d5w75a4, d5w75b1, d5w75b3, d5w75b4, d5w75c1, d5w75c3, d5w75c4, d5w75d1, d5w75d3, d5w75d4
automated match to d1b23p1
complexed with gdp, mg, so4, suc

Domain d5w75b2: 5w75 B:203-301 [351509]
Other proteins in same PDB: d5w75a1, d5w75a3, d5w75a4, d5w75b1, d5w75b3, d5w75b4, d5w75c1, d5w75c3, d5w75c4, d5w75d1, d5w75d3, d5w75d4
automated match to d1b23p1
complexed with gdp, mg, so4, suc

Domain d5w75c2: 5w75 C:203-301 [351505]
Other proteins in same PDB: d5w75a1, d5w75a3, d5w75a4, d5w75b1, d5w75b3, d5w75b4, d5w75c1, d5w75c3, d5w75c4, d5w75d1, d5w75d3, d5w75d4
automated match to d1b23p1
complexed with gdp, mg, so4, suc

Domain d5w75d2: 5w75 D:203-301 [351493]
Other proteins in same PDB: d5w75a1, d5w75a3, d5w75a4, d5w75b1, d5w75b3, d5w75b4, d5w75c1, d5w75c3, d5w75c4, d5w75d1, d5w75d3, d5w75d4
automated match to d1b23p1
complexed with gdp, mg, so4, suc

Thermus aquaticus [TaxId:271] [254881] (1 PDB entry)
- Domains for 1ob5:
  1. Domain d1ob5a1: 1ob5 A:213-312 [118691]
    Other proteins in same PDB: d1ob5a2, d1ob5a3, d1ob5c2, d1ob5c3, d1ob5e2, d1ob5e3
    automated match to d1b23p1
    protein/RNA complex; complexed with enx, gnp, mg
  2. Domain d1ob5c1: 1ob5 C:213-312 [118694]
    Other proteins in same PDB: d1ob5a2, d1ob5a3, d1ob5c2, d1ob5c3, d1ob5e2, d1ob5e3
    automated match to d1b23p1
    protein/RNA complex; complexed with enx, gnp, mg
  3. Domain d1ob5e1: 1ob5 E:213-312 [118697]
    Other proteins in same PDB: d1ob5a2, d1ob5a3, d1ob5c2, d1ob5c3, d1ob5e2, d1ob5e3
    automated match to d1b23p1
    protein/RNA complex; complexed with enx, gnp, mg
Thermus thermophilus HB8 [TaxId:300852] [255083] (2 PDB entries)
1. Domain for 2c77:
  - Domain d2c77a1: 2c77 A:213-312 [130034]
    Other proteins in same PDB: d2c77a2, d2c77a3
    automated match to d1b23p1
    complexed with gnp, mg, peg
2. Domain for 2c78:
  - Domain d2c78a1: 2c78 A:213-312 [130037]
    Other proteins in same PDB: d2c78a2, d2c78a3
    automated match to d1b23p1
    complexed with gnp, mg, pul
Thermus thermophilus [TaxId:274] [256284] (6 PDB entries)
1. Domain for 4h9g:
  - Domain d4h9ga2: 4h9g A:213-312 [252403]
    Other proteins in same PDB: d4h9ga1, d4h9ga3
    automated match to d1b23p1
    complexed with 14j, gnp, mg, nh4, so4
2. Domain for 4lbv:
  - Domain d4lbva2: 4lbv A:213-312 [253534]
    Other proteins in same PDB: d4lbva1, d4lbva3
    automated match to d1b23p1
    complexed with cl, gnp, mg, nh4, so4
3. Domain for 4lbw:
  - Domain d4lbwa2: 4lbw A:213-312 [253537]
    Other proteins in same PDB: d4lbwa1, d4lbwa3
    automated match to d1b23p1
    complexed with gnp, mg, nh4, so4
4. Domain for 4lby:
  - Domain d4lbya2: 4lby A:213-312 [253540]
    Other proteins in same PDB: d4lbya1, d4lbya3
    automated match to d1b23p1
    complexed with gnp, mg, nh4, so4
5. Domain for 4lbz:
  - Domain d4lbza2: 4lbz A:213-312 [253543]
    Other proteins in same PDB: d4lbza1, d4lbza3
    automated match to d1b23p1
    complexed with gnp, mg, nh4, so4
6. Domain for 4lc0:
  - Domain d4lc0a2: 4lc0 A:213-312 [253546]
    Other proteins in same PDB: d4lc0a1, d4lc0a3
    automated match to d1b23p1
    complexed with gnp, mg, nh4, so4
Vibrio vulnificus [TaxId:216895] [326569] (1 PDB entry)
- Domain for 5tv2:
  - Domain d5tv2a2: 5tv2 A:289-405 [326570]
    Other proteins in same PDB: d5tv2a1
    automated match to d1dara1

More info for Protein automated matches from b.43.3.0: automated matches

Timeline for Protein automated matches from b.43.3.0: automated matches:

Protein automated matches from b.43.3.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from b.43.3.0: automated matches appears in SCOPe 2.06
Protein automated matches from b.43.3.0: automated matches appears in the current release, SCOPe 2.08