Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1543994Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
    barrel, closed; n=6, S=10; greek-key
  4. 1544037Superfamily b.43.3: Translation proteins [50447] (7 families) (S)
  5. 1544344Family b.43.3.0: automated matches [227211] (1 protein)
    not a true family
  6. 1544345Protein automated matches [226946] (16 species)
    not a true protein

Species:

  1. 1544346Acinetobacter calcoaceticus [TaxId:471] [225296] (1 PDB entry)
  2. 1544348Aeropyrum pernix [TaxId:272557] [256138] (2 PDB entries)
    1. Domain for 3vmf:
    2. Domain for 3wxm:
  3. 1544351Aeropyrum pernix [TaxId:56636] [255747] (1 PDB entry)
  4. 1544356Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255011] (4 PDB entries)
    1. Domains for 1zm2:
      1. 1544361Domain d1zm2a1: 1zm2 A:344-481 [125280]
        Other proteins in same PDB: d1zm2a2, d1zm2a3, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c2, d1zm2c3, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e2, d1zm2e3, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua1
        complexed with apr
      2. 1544362Domain d1zm2c1: 1zm2 C:344-481 [125286]
        Other proteins in same PDB: d1zm2a2, d1zm2a3, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c2, d1zm2c3, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e2, d1zm2e3, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua1
        complexed with apr
      3. 1544363Domain d1zm2e1: 1zm2 E:344-481 [125292]
        Other proteins in same PDB: d1zm2a2, d1zm2a3, d1zm2a4, d1zm2a5, d1zm2b_, d1zm2c2, d1zm2c3, d1zm2c4, d1zm2c5, d1zm2d_, d1zm2e2, d1zm2e3, d1zm2e4, d1zm2e5, d1zm2f_
        automated match to d1n0ua1
        complexed with apr
    2. Domains for 1zm3:
      1. 1544364Domain d1zm3a1: 1zm3 A:344-481 [125298]
        Other proteins in same PDB: d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua1
      2. 1544365Domain d1zm3c1: 1zm3 C:344-481 [125304]
        Other proteins in same PDB: d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua1
      3. 1544366Domain d1zm3e1: 1zm3 E:344-481 [125310]
        Other proteins in same PDB: d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3b_, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3d_, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5, d1zm3f_
        automated match to d1n0ua1
    3. Domain for 2e1r:
    4. Domains for 2zit:
      1. 1544357Domain d2zita2: 2zit A:344-481 [239065]
        Other proteins in same PDB: d2zita1, d2zita3, d2zita4, d2zita5, d2zitb_, d2zitc1, d2zitc3, d2zitc4, d2zitc5, d2zitd_, d2zite1, d2zite3, d2zite4, d2zite5, d2zitf_
        automated match to d1n0ua1
        protein/RNA complex; complexed with nad
      2. 1544358Domain d2zitc2: 2zit C:344-481 [239070]
        Other proteins in same PDB: d2zita1, d2zita3, d2zita4, d2zita5, d2zitb_, d2zitc1, d2zitc3, d2zitc4, d2zitc5, d2zitd_, d2zite1, d2zite3, d2zite4, d2zite5, d2zitf_
        automated match to d1n0ua1
        protein/RNA complex; complexed with nad
      3. 1544359Domain d2zite2: 2zit E:344-481 [239075]
        Other proteins in same PDB: d2zita1, d2zita3, d2zita4, d2zita5, d2zitb_, d2zitc1, d2zitc3, d2zitc4, d2zitc5, d2zitd_, d2zite1, d2zite3, d2zite4, d2zite5, d2zitf_
        automated match to d1n0ua1
        protein/RNA complex; complexed with nad
  5. 1544367Chaetomium thermophilum [TaxId:209285] [260029] (2 PDB entries)
    1. Domains for 4tmz:
      1. 1544368Domain d4tmza2: 4tmz A:745-845 [260032]
        Other proteins in same PDB: d4tmza1, d4tmzb1
        automated match to d1g7sa1
        complexed with cl, gol, gsp, k, mg
      2. 1544369Domain d4tmzb2: 4tmz B:745-846 [260030]
        Other proteins in same PDB: d4tmza1, d4tmzb1
        automated match to d1g7sa1
        complexed with cl, gol, gsp, k, mg
    2. Domains for 4tn1:
      1. 1544370Domain d4tn1a2: 4tn1 A:745-845 [261155]
        Other proteins in same PDB: d4tn1a1
        automated match to d1g7sa1
        complexed with gsp, mg; mutant
      2. 1544371Domain d4tn1b2: 4tn1 B:745-846 [260035]
        Other proteins in same PDB: d4tn1b1
        automated match to d1g7sa1
        complexed with gsp, mg; mutant
  6. 1544372Escherichia coli K-12 [TaxId:83333] [256111] (3 PDB entries)
    1. Domain for 3u2q:
    2. Domains for 3u6b:
      1. 1544373Domain d3u6ba2: 3u6b A:205-296 [250088]
        Other proteins in same PDB: d3u6ba1, d3u6ba3, d3u6bb1, d3u6bb3
        automated match to d1efca1
        complexed with gdp, mg
      2. 1544374Domain d3u6bb2: 3u6b B:205-296 [250091]
        Other proteins in same PDB: d3u6ba1, d3u6ba3, d3u6bb1, d3u6bb3
        automated match to d1efca1
        complexed with gdp, mg
    3. Domains for 3u6k:
      1. 1544375Domain d3u6ka2: 3u6k A:205-296 [250096]
        Other proteins in same PDB: d3u6ka1, d3u6ka3, d3u6kb1, d3u6kb3
        automated match to d1efca1
        complexed with gdp, mg
      2. 1544376Domain d3u6kb2: 3u6k B:205-296 [250099]
        Other proteins in same PDB: d3u6ka1, d3u6ka3, d3u6kb1, d3u6kb3
        automated match to d1efca1
        complexed with gdp, mg
  7. 1544378Escherichia coli [TaxId:469008] [257409] (1 PDB entry)
  8. 1544380Haemophilus influenzae [TaxId:727] [225682] (1 PDB entry)
  9. 1544382Mouse (Mus musculus) [TaxId:10090] [255093] (1 PDB entry)
  10. 1544384Oryctolagus cuniculus [TaxId:9986] [259160] (1 PDB entry)
  11. 1544387Pseudomonas putida [TaxId:160488] [256312] (2 PDB entries)
    1. Domains for 4iw3:
      1. 1544393Domain d4iw3b2: 4iw3 B:206-304 [252733]
        Other proteins in same PDB: d4iw3b1, d4iw3b3, d4iw3k1, d4iw3k3
        automated match to d1b23p1
        complexed with gdp, mg, mn, oga
      2. 1544394Domain d4iw3k2: 4iw3 K:206-304 [252736]
        Other proteins in same PDB: d4iw3b1, d4iw3b3, d4iw3k1, d4iw3k3
        automated match to d1b23p1
        complexed with gdp, mg, mn, oga
    2. Domains for 4j0q:
      1. 1544388Domain d4j0qa2: 4j0q A:206-304 [252782]
        Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
        automated match to d1b23p1
        complexed with gdp, mes, mg, mpd
      2. 1544389Domain d4j0qb2: 4j0q B:206-304 [252785]
        Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
        automated match to d1b23p1
        complexed with gdp, mes, mg, mpd
      3. 1544390Domain d4j0qc2: 4j0q C:206-304 [252788]
        Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
        automated match to d1b23p1
        complexed with gdp, mes, mg, mpd
      4. 1544391Domain d4j0qd2: 4j0q D:206-304 [252791]
        Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
        automated match to d1b23p1
        complexed with gdp, mes, mg, mpd
      5. 1544392Domain d4j0qe2: 4j0q E:206-304 [252794]
        Other proteins in same PDB: d4j0qa1, d4j0qa3, d4j0qb1, d4j0qb3, d4j0qc1, d4j0qc3, d4j0qd1, d4j0qd3, d4j0qe1, d4j0qe3
        automated match to d1b23p1
        complexed with gdp, mes, mg, mpd
  12. 1544395Sulfolobus solfataricus [TaxId:2287] [255782] (3 PDB entries)
    1. Domains for 3cw2:
      1. 1544398Domain d3cw2a2: 3cw2 A:207-320 [239189]
        Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a1
      2. 1544399Domain d3cw2b2: 3cw2 B:207-320 [239192]
        Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a1
      3. 1544400Domain d3cw2e2: 3cw2 E:207-320 [239195]
        Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a1
      4. 1544401Domain d3cw2f2: 3cw2 F:207-320 [239198]
        Other proteins in same PDB: d3cw2a1, d3cw2a3, d3cw2b1, d3cw2b3, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e3, d3cw2f1, d3cw2f3, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a1
    2. Domain for 3pen:
    3. Domain for 4nbs:
  13. 1544402Sulfolobus solfataricus [TaxId:273057] [256084] (1 PDB entry)
  14. Thermus aquaticus [TaxId:271] [254881] (1 PDB entry)
  15. 1544408Thermus thermophilus HB8 [TaxId:300852] [255083] (2 PDB entries)
    1. Domain for 2c77:
    2. Domain for 2c78:
  16. 1544411Thermus thermophilus [TaxId:274] [256284] (6 PDB entries)
    1. Domain for 4h9g:
    2. Domain for 4lbv:
    3. Domain for 4lbw:
    4. Domain for 4lby:
    5. Domain for 4lbz:
    6. Domain for 4lc0:

More info for Protein automated matches from b.43.3.0: automated matches

Timeline for Protein automated matches from b.43.3.0: automated matches: