Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1487717Fold a.29: Bromodomain-like [47363] (15 superfamilies)
    4 helices; bundle; minor mirror variant of up-and-down topology
  4. 1488075Superfamily a.29.3: Acyl-CoA dehydrogenase C-terminal domain-like [47203] (3 families) (S)
    multidomain flavoprotein; N-terminal domain is all-alpha; the middle domain is open (5,8) barrel
  5. 1488205Family a.29.3.0: automated matches [227204] (1 protein)
    not a true family
  6. 1488206Protein automated matches [226935] (18 species)
    not a true protein

Species:

  1. 1488207Acidaminococcus fermentans [TaxId:591001] [236043] (1 PDB entry)
  2. 1488210Brucella abortus [TaxId:1104320] [261999] (1 PDB entry)
  3. 1488215Brucella abortus [TaxId:359391] [259596] (1 PDB entry)
  4. 1488218Brucella suis [TaxId:204722] [230320] (1 PDB entry)
  5. 1488223Burkholderia cenocepacia [TaxId:216591] [228726] (1 PDB entry)
  6. 1488226Burkholderia pseudomallei [TaxId:320372] [225463] (6 PDB entries)
    1. Domains for 3d6b:
      1. 1488239Domain d3d6ba2: 3d6b A:243-393 [209018]
        Other proteins in same PDB: d3d6ba1, d3d6bb1, d3d6bc1, d3d6bd1
        automated match to d1siqa1
        complexed with 54d
      2. 1488240Domain d3d6bb2: 3d6b B:243-393 [209020]
        Other proteins in same PDB: d3d6ba1, d3d6bb1, d3d6bc1, d3d6bd1
        automated match to d1siqa1
        complexed with 54d
      3. 1488241Domain d3d6bc2: 3d6b C:243-393 [209022]
        Other proteins in same PDB: d3d6ba1, d3d6bb1, d3d6bc1, d3d6bd1
        automated match to d1siqa1
        complexed with 54d
      4. 1488242Domain d3d6bd2: 3d6b D:243-393 [209024]
        Other proteins in same PDB: d3d6ba1, d3d6bb1, d3d6bc1, d3d6bd1
        automated match to d1siqa1
        complexed with 54d
    2. Domains for 3eom:
      1. 1488243Domain d3eoma2: 3eom A:243-395 [209573]
        Other proteins in same PDB: d3eoma1, d3eomb1, d3eomc1, d3eomd1
        automated match to d1siqa1
      2. 1488244Domain d3eomb2: 3eom B:243-393 [209575]
        Other proteins in same PDB: d3eoma1, d3eomb1, d3eomc1, d3eomd1
        automated match to d1siqa1
      3. 1488245Domain d3eomc2: 3eom C:243-393 [209577]
        Other proteins in same PDB: d3eoma1, d3eomb1, d3eomc1, d3eomd1
        automated match to d1siqa1
      4. 1488246Domain d3eomd2: 3eom D:243-394 [209579]
        Other proteins in same PDB: d3eoma1, d3eomb1, d3eomc1, d3eomd1
        automated match to d1siqa1
    3. Domains for 3eon:
      1. 1488247Domain d3eona2: 3eon A:243-394 [209581]
        Other proteins in same PDB: d3eona1, d3eonb1, d3eonc1, d3eond1
        automated match to d1siqa1
        complexed with 341
      2. 1488248Domain d3eonb2: 3eon B:243-393 [209583]
        Other proteins in same PDB: d3eona1, d3eonb1, d3eonc1, d3eond1
        automated match to d1siqa1
        complexed with 341
      3. 1488249Domain d3eonc2: 3eon C:243-393 [209585]
        Other proteins in same PDB: d3eona1, d3eonb1, d3eonc1, d3eond1
        automated match to d1siqa1
        complexed with 341
      4. 1488250Domain d3eond2: 3eon D:243-395 [209587]
        Other proteins in same PDB: d3eona1, d3eonb1, d3eonc1, d3eond1
        automated match to d1siqa1
        complexed with 341
    4. Domains for 3gnc:
      1. 1488235Domain d3gnca2: 3gnc A:243-393 [210610]
        Other proteins in same PDB: d3gnca1, d3gncb1, d3gncc1, d3gncd1
        automated match to d1siqa1
        complexed with epe, qqq, so4
      2. 1488236Domain d3gncb2: 3gnc B:243-393 [210612]
        Other proteins in same PDB: d3gnca1, d3gncb1, d3gncc1, d3gncd1
        automated match to d1siqa1
        complexed with epe, qqq, so4
      3. 1488237Domain d3gncc2: 3gnc C:243-394 [210614]
        Other proteins in same PDB: d3gnca1, d3gncb1, d3gncc1, d3gncd1
        automated match to d1siqa1
        complexed with epe, qqq, so4
      4. 1488238Domain d3gncd2: 3gnc D:243-393 [210616]
        Other proteins in same PDB: d3gnca1, d3gncb1, d3gncc1, d3gncd1
        automated match to d1siqa1
        complexed with epe, qqq, so4
    5. Domains for 3gqt:
      1. 1488231Domain d3gqta2: 3gqt A:243-394 [210633]
        Other proteins in same PDB: d3gqta1, d3gqtb1, d3gqtc1, d3gqtd1
        automated match to d1siqa1
        complexed with ufo
      2. 1488232Domain d3gqtb2: 3gqt B:243-394 [210635]
        Other proteins in same PDB: d3gqta1, d3gqtb1, d3gqtc1, d3gqtd1
        automated match to d1siqa1
        complexed with ufo
      3. 1488233Domain d3gqtc2: 3gqt C:243-394 [210637]
        Other proteins in same PDB: d3gqta1, d3gqtb1, d3gqtc1, d3gqtd1
        automated match to d1siqa1
        complexed with ufo
      4. 1488234Domain d3gqtd2: 3gqt D:243-393 [210639]
        Other proteins in same PDB: d3gqta1, d3gqtb1, d3gqtc1, d3gqtd1
        automated match to d1siqa1
        complexed with ufo
    6. Domains for 3ii9:
      1. 1488227Domain d3ii9a2: 3ii9 A:243-395 [211701]
        Other proteins in same PDB: d3ii9a1, d3ii9b1, d3ii9c1, d3ii9d1
        automated match to d1siqa1
        complexed with gol, mg, peg, pg4, pge
      2. 1488228Domain d3ii9b2: 3ii9 B:243-395 [211703]
        Other proteins in same PDB: d3ii9a1, d3ii9b1, d3ii9c1, d3ii9d1
        automated match to d1siqa1
        complexed with gol, mg, peg, pg4, pge
      3. 1488229Domain d3ii9c2: 3ii9 C:243-395 [211705]
        Other proteins in same PDB: d3ii9a1, d3ii9b1, d3ii9c1, d3ii9d1
        automated match to d1siqa1
        complexed with gol, mg, peg, pg4, pge
      4. 1488230Domain d3ii9d2: 3ii9 D:243-395 [211707]
        Other proteins in same PDB: d3ii9a1, d3ii9b1, d3ii9c1, d3ii9d1
        automated match to d1siqa1
        complexed with gol, mg, peg, pg4, pge
  7. 1488251Burkholderia thailandensis [TaxId:271848] [228981] (1 PDB entry)
  8. 1488256Desulfococcus multivorans [TaxId:897] [225944] (2 PDB entries)
    1. Domains for 3mpi:
      1. 1488257Domain d3mpia2: 3mpi A:232-391 [213512]
        Other proteins in same PDB: d3mpia1, d3mpib1, d3mpic1, d3mpid1
        automated match to d3mdea1
        complexed with fad, gra
      2. 1488258Domain d3mpib2: 3mpi B:232-390 [213514]
        Other proteins in same PDB: d3mpia1, d3mpib1, d3mpic1, d3mpid1
        automated match to d3mdea1
        complexed with fad, gra
      3. 1488259Domain d3mpic2: 3mpi C:232-395 [213516]
        Other proteins in same PDB: d3mpia1, d3mpib1, d3mpic1, d3mpid1
        automated match to d3mdea1
        complexed with fad, gra
      4. 1488260Domain d3mpid2: 3mpi D:232-390 [213518]
        Other proteins in same PDB: d3mpia1, d3mpib1, d3mpic1, d3mpid1
        automated match to d3mdea1
        complexed with fad, gra
    2. Domains for 3mpj:
      1. 1488261Domain d3mpja2: 3mpj A:232-389 [213520]
        Other proteins in same PDB: d3mpja1, d3mpjb1, d3mpjd1, d3mpje1, d3mpjf1, d3mpjg1
        automated match to d3mdea1
        complexed with cl, fad
      2. 1488262Domain d3mpjb2: 3mpj B:232-393 [213522]
        Other proteins in same PDB: d3mpja1, d3mpjb1, d3mpjd1, d3mpje1, d3mpjf1, d3mpjg1
        automated match to d3mdea1
        complexed with cl, fad
      3. 1488263Domain d3mpjd2: 3mpj D:232-390 [213524]
        Other proteins in same PDB: d3mpja1, d3mpjb1, d3mpjd1, d3mpje1, d3mpjf1, d3mpjg1
        automated match to d3mdea1
        complexed with cl, fad
      4. 1488264Domain d3mpje2: 3mpj E:232-391 [213526]
        Other proteins in same PDB: d3mpja1, d3mpjb1, d3mpjd1, d3mpje1, d3mpjf1, d3mpjg1
        automated match to d3mdea1
        complexed with cl, fad
      5. 1488265Domain d3mpjf2: 3mpj F:232-390 [213528]
        Other proteins in same PDB: d3mpja1, d3mpjb1, d3mpjd1, d3mpje1, d3mpjf1, d3mpjg1
        automated match to d3mdea1
        complexed with cl, fad
      6. 1488266Domain d3mpjg2: 3mpj G:232-389 [213530]
        Other proteins in same PDB: d3mpja1, d3mpjb1, d3mpjd1, d3mpje1, d3mpjf1, d3mpjg1
        automated match to d3mdea1
        complexed with cl, fad
  9. 1488267Fungus (Fusarium oxysporum) [TaxId:5507] [231947] (1 PDB entry)
  10. 1488272Geobacillus kaustophilus [TaxId:235909] [225263] (1 PDB entry)
  11. 1488275Human (Homo sapiens) [TaxId:9606] [225243] (4 PDB entries)
    1. Domains for 2a1t:
      1. 1488288Domain d2a1ta1: 2a1t A:242-395 [126005]
        Other proteins in same PDB: d2a1ta2, d2a1tb2, d2a1tc2, d2a1td2, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda1
        complexed with amp, fad
      2. 1488289Domain d2a1tb1: 2a1t B:242-396 [126007]
        Other proteins in same PDB: d2a1ta2, d2a1tb2, d2a1tc2, d2a1td2, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda1
        complexed with amp, fad
      3. 1488290Domain d2a1tc1: 2a1t C:242-396 [126009]
        Other proteins in same PDB: d2a1ta2, d2a1tb2, d2a1tc2, d2a1td2, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda1
        complexed with amp, fad
      4. 1488291Domain d2a1td1: 2a1t D:242-396 [126011]
        Other proteins in same PDB: d2a1ta2, d2a1tb2, d2a1tc2, d2a1td2, d2a1tr1, d2a1tr2, d2a1ts1
        automated match to d1egda1
        complexed with amp, fad
    2. Domains for 2jif:
      1. 1488284Domain d2jifa2: 2jif A:280-432 [205050]
        Other proteins in same PDB: d2jifa1, d2jifb1, d2jifc1, d2jifd1
        automated match to d1rx0a1
        complexed with cl, cos, edo, fad
      2. 1488285Domain d2jifb2: 2jif B:280-432 [205052]
        Other proteins in same PDB: d2jifa1, d2jifb1, d2jifc1, d2jifd1
        automated match to d1rx0a1
        complexed with cl, cos, edo, fad
      3. 1488286Domain d2jifc2: 2jif C:280-432 [205054]
        Other proteins in same PDB: d2jifa1, d2jifb1, d2jifc1, d2jifd1
        automated match to d1rx0a1
        complexed with cl, cos, edo, fad
      4. 1488287Domain d2jifd2: 2jif D:280-432 [205056]
        Other proteins in same PDB: d2jifa1, d2jifb1, d2jifc1, d2jifd1
        automated match to d1rx0a1
        complexed with cl, cos, edo, fad
    3. Domains for 2vig:
      1. 1488276Domain d2viga2: 2vig A:259-412 [206363]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      2. 1488277Domain d2vigb2: 2vig B:259-411 [206365]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      3. 1488278Domain d2vigc2: 2vig C:259-418 [206367]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      4. 1488279Domain d2vigd2: 2vig D:259-413 [206369]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      5. 1488280Domain d2vige2: 2vig E:259-413 [206371]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      6. 1488281Domain d2vigf2: 2vig F:259-413 [206373]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      7. 1488282Domain d2vigg2: 2vig G:259-411 [206375]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
      8. 1488283Domain d2vigh2: 2vig H:259-413 [206377]
        Other proteins in same PDB: d2viga1, d2vigb1, d2vigc1, d2vigd1, d2vige1, d2vigf1, d2vigg1, d2vigh1
        automated match to d1jqia1
        complexed with cos, edo, fad
    4. Domains for 2wbi:
      1. 1488292Domain d2wbia2: 2wbi A:266-425 [206760]
        Other proteins in same PDB: d2wbia1, d2wbib1
        automated match to d1ukwa1
        complexed with fad, po4, unx
      2. 1488293Domain d2wbib2: 2wbi B:266-424 [206762]
        Other proteins in same PDB: d2wbia1, d2wbib1
        automated match to d1ukwa1
        complexed with fad, po4, unx
  12. 1488294Mycobacterium abscessus [TaxId:561007] [226109] (2 PDB entries)
    1. Domains for 3r7k:
      1. 1488296Domain d3r7ka2: 3r7k A:249-398 [215631]
        Other proteins in same PDB: d3r7ka1, d3r7kb1, d3r7kc1, d3r7kd1
        automated match to d1rx0a1
        complexed with fda, k
      2. 1488297Domain d3r7kb2: 3r7k B:249-398 [215633]
        Other proteins in same PDB: d3r7ka1, d3r7kb1, d3r7kc1, d3r7kd1
        automated match to d1rx0a1
        complexed with fda, k
      3. 1488298Domain d3r7kc2: 3r7k C:249-399 [215635]
        Other proteins in same PDB: d3r7ka1, d3r7kb1, d3r7kc1, d3r7kd1
        automated match to d1rx0a1
        complexed with fda, k
      4. 1488299Domain d3r7kd2: 3r7k D:249-398 [215637]
        Other proteins in same PDB: d3r7ka1, d3r7kb1, d3r7kc1, d3r7kd1
        automated match to d1rx0a1
        complexed with fda, k
    2. Domain for 4hr3:
  13. 1488300Mycobacterium smegmatis [TaxId:246196] [226168] (3 PDB entries)
    1. Domain for 3sf6:
    2. Domains for 3swo:
      1. 1488301Domain d3swoa2: 3swo A:244-396 [216589]
        Other proteins in same PDB: d3swoa1, d3swob1, d3swoc1, d3swod1
        automated match to d1siqa1
        complexed with edo, fda, unx
      2. 1488302Domain d3swob2: 3swo B:244-396 [216591]
        Other proteins in same PDB: d3swoa1, d3swob1, d3swoc1, d3swod1
        automated match to d1siqa1
        complexed with edo, fda, unx
      3. 1488303Domain d3swoc2: 3swo C:244-396 [216593]
        Other proteins in same PDB: d3swoa1, d3swob1, d3swoc1, d3swod1
        automated match to d1siqa1
        complexed with edo, fda, unx
      4. 1488304Domain d3swod2: 3swo D:244-396 [216595]
        Other proteins in same PDB: d3swoa1, d3swob1, d3swoc1, d3swod1
        automated match to d1siqa1
        complexed with edo, fda, unx
    3. Domains for 4iv6:
      1. 1488306Domain d4iv6a2: 4iv6 A:227-384 [223418]
        Other proteins in same PDB: d4iv6a1, d4iv6b1
        automated match to d1ukwa1
        complexed with fda
      2. 1488307Domain d4iv6b2: 4iv6 B:227-384 [223420]
        Other proteins in same PDB: d4iv6a1, d4iv6b1
        automated match to d1ukwa1
        complexed with fda
  14. 1488308Mycobacterium thermoresistibile [TaxId:1797] [225913] (2 PDB entries)
    1. Domains for 3nf4:
      1. 1488313Domain d3nf4a2: 3nf4 A:233-382 [213914]
        Other proteins in same PDB: d3nf4a1, d3nf4b1
        automated match to d1ukwa1
        complexed with fad, na
      2. 1488314Domain d3nf4b2: 3nf4 B:233-382 [213916]
        Other proteins in same PDB: d3nf4a1, d3nf4b1
        automated match to d1ukwa1
        complexed with fad, na
    2. Domains for 3pfd:
      1. 1488309Domain d3pfda2: 3pfd A:239-389 [214757]
        Other proteins in same PDB: d3pfda1, d3pfdb1, d3pfdc1, d3pfdd1
        automated match to d1jqia1
        complexed with fda, iod
      2. 1488310Domain d3pfdb2: 3pfd B:239-389 [214759]
        Other proteins in same PDB: d3pfda1, d3pfdb1, d3pfdc1, d3pfdd1
        automated match to d1jqia1
        complexed with fda, iod
      3. 1488311Domain d3pfdc2: 3pfd C:239-389 [214761]
        Other proteins in same PDB: d3pfda1, d3pfdb1, d3pfdc1, d3pfdd1
        automated match to d1jqia1
        complexed with fda, iod
      4. 1488312Domain d3pfdd2: 3pfd D:239-389 [214763]
        Other proteins in same PDB: d3pfda1, d3pfdb1, d3pfdc1, d3pfdd1
        automated match to d1jqia1
        complexed with fda, iod
  15. 1488315Oscillatoria sp. [TaxId:272129] [229251] (1 PDB entry)
  16. 1488324Podospora anserina [TaxId:5145] [225906] (1 PDB entry)
  17. 1488329Solanum lycopersicum [TaxId:4081] [255174] (1 PDB entry)
  18. 1488336Thermus thermophilus HB8 [TaxId:300852] [225241] (1 PDB entry)

More info for Protein automated matches from a.29.3.0: automated matches

Timeline for Protein automated matches from a.29.3.0: automated matches: