Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1689992Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1691655Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
    2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
  4. 1691656Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families) (S)
    flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
  5. 1691797Family e.6.1.0: automated matches [227203] (1 protein)
    not a true family
  6. 1691798Protein automated matches [226934] (17 species)
    not a true protein

Species:

  1. 1691799Acidaminococcus fermentans [TaxId:591001] [236041] (1 PDB entry)
  2. 1691802Brucella abortus [TaxId:1104320] [261997] (1 PDB entry)
  3. 1691807Brucella abortus [TaxId:359391] [259594] (1 PDB entry)
  4. 1691810Brucella suis [TaxId:204722] [230318] (1 PDB entry)
  5. 1691815Burkholderia cenocepacia [TaxId:216591] [228724] (1 PDB entry)
  6. 1691818Burkholderia pseudomallei [TaxId:320372] [225462] (6 PDB entries)
    1. Domains for 3d6b:
      1. 1691831Domain d3d6ba1: 3d6b A:4-242 [209017]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
      2. 1691832Domain d3d6bb1: 3d6b B:4-242 [209019]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
      3. 1691833Domain d3d6bc1: 3d6b C:4-242 [209021]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
      4. 1691834Domain d3d6bd1: 3d6b D:3-242 [209023]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
    2. Domains for 3eom:
      1. 1691835Domain d3eoma1: 3eom A:4-242 [209572]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
      2. 1691836Domain d3eomb1: 3eom B:4-242 [209574]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
      3. 1691837Domain d3eomc1: 3eom C:3-242 [209576]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
      4. 1691838Domain d3eomd1: 3eom D:3-242 [209578]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
    3. Domains for 3eon:
      1. 1691839Domain d3eona1: 3eon A:4-242 [209580]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
      2. 1691840Domain d3eonb1: 3eon B:4-242 [209582]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
      3. 1691841Domain d3eonc1: 3eon C:4-242 [209584]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
      4. 1691842Domain d3eond1: 3eon D:3-242 [209586]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
    4. Domains for 3gnc:
      1. 1691827Domain d3gnca1: 3gnc A:3-242 [210609]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
      2. 1691828Domain d3gncb1: 3gnc B:4-242 [210611]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
      3. 1691829Domain d3gncc1: 3gnc C:4-242 [210613]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
      4. 1691830Domain d3gncd1: 3gnc D:3-242 [210615]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
    5. Domains for 3gqt:
      1. 1691823Domain d3gqta1: 3gqt A:4-242 [210632]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
      2. 1691824Domain d3gqtb1: 3gqt B:4-242 [210634]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
      3. 1691825Domain d3gqtc1: 3gqt C:4-242 [210636]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
      4. 1691826Domain d3gqtd1: 3gqt D:4-242 [210638]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
    6. Domains for 3ii9:
      1. 1691819Domain d3ii9a1: 3ii9 A:3-242 [211700]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
      2. 1691820Domain d3ii9b1: 3ii9 B:4-242 [211702]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
      3. 1691821Domain d3ii9c1: 3ii9 C:4-242 [211704]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
      4. 1691822Domain d3ii9d1: 3ii9 D:3-242 [211706]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
  7. 1691843Burkholderia thailandensis [TaxId:271848] [228976] (1 PDB entry)
  8. 1691848Desulfococcus multivorans [TaxId:897] [225943] (2 PDB entries)
    1. Domains for 3mpi:
      1. 1691849Domain d3mpia1: 3mpi A:1-231 [213511]
        Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
        automated match to d3mdea2
        complexed with fad, gra
      2. 1691850Domain d3mpib1: 3mpi B:1-231 [213513]
        Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
        automated match to d3mdea2
        complexed with fad, gra
      3. 1691851Domain d3mpic1: 3mpi C:1-231 [213515]
        Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
        automated match to d3mdea2
        complexed with fad, gra
      4. 1691852Domain d3mpid1: 3mpi D:1-231 [213517]
        Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
        automated match to d3mdea2
        complexed with fad, gra
    2. Domains for 3mpj:
      1. 1691853Domain d3mpja1: 3mpj A:1-231 [213519]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      2. 1691854Domain d3mpjb1: 3mpj B:1-231 [213521]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      3. 1691855Domain d3mpjd1: 3mpj D:1-231 [213523]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      4. 1691856Domain d3mpje1: 3mpj E:1-231 [213525]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      5. 1691857Domain d3mpjf1: 3mpj F:1-231 [213527]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      6. 1691858Domain d3mpjg1: 3mpj G:1-231 [213529]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
  9. 1691859Geobacillus kaustophilus [TaxId:235909] [225262] (1 PDB entry)
  10. 1691862Human (Homo sapiens) [TaxId:9606] [225242] (2 PDB entries)
    1. Domains for 2jif:
      1. 1691863Domain d2jifa1: 2jif A:52-279 [205049]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
      2. 1691864Domain d2jifb1: 2jif B:56-279 [205051]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
      3. 1691865Domain d2jifc1: 2jif C:56-279 [205053]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
      4. 1691866Domain d2jifd1: 2jif D:52-279 [205055]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
    2. Domains for 2wbi:
      1. 1691867Domain d2wbia1: 2wbi A:22-265 [206759]
        Other proteins in same PDB: d2wbia2, d2wbib2
        automated match to d1ukwa2
        complexed with fad, po4, unx
      2. 1691868Domain d2wbib1: 2wbi B:22-265 [206761]
        Other proteins in same PDB: d2wbia2, d2wbib2
        automated match to d1ukwa2
        complexed with fad, po4, unx
  11. 1691869Mycobacterium abscessus [TaxId:561007] [226108] (2 PDB entries)
    1. Domains for 3r7k:
      1. 1691871Domain d3r7ka1: 3r7k A:21-248 [215630]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
      2. 1691872Domain d3r7kb1: 3r7k B:21-248 [215632]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
      3. 1691873Domain d3r7kc1: 3r7k C:23-248 [215634]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
      4. 1691874Domain d3r7kd1: 3r7k D:23-248 [215636]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
    2. Domain for 4hr3:
  12. 1691875Mycobacterium smegmatis [TaxId:246196] [226167] (3 PDB entries)
    1. Domain for 3sf6:
    2. Domains for 3swo:
      1. 1691876Domain d3swoa1: 3swo A:9-243 [216588]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
      2. 1691877Domain d3swob1: 3swo B:11-243 [216590]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
      3. 1691878Domain d3swoc1: 3swo C:11-243 [216592]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
      4. 1691879Domain d3swod1: 3swo D:11-243 [216594]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
    3. Domains for 4iv6:
      1. 1691881Domain d4iv6a1: 4iv6 A:3-226 [223417]
        Other proteins in same PDB: d4iv6a2, d4iv6b2
        automated match to d1ukwa2
        complexed with fda
      2. 1691882Domain d4iv6b1: 4iv6 B:2-226 [223419]
        Other proteins in same PDB: d4iv6a2, d4iv6b2
        automated match to d1ukwa2
        complexed with fda
  13. 1691883Mycobacterium thermoresistibile [TaxId:1797] [225912] (2 PDB entries)
    1. Domains for 3nf4:
      1. 1691888Domain d3nf4a1: 3nf4 A:5-232 [213913]
        Other proteins in same PDB: d3nf4a2, d3nf4b2
        automated match to d1ukwa2
        complexed with fad, na
      2. 1691889Domain d3nf4b1: 3nf4 B:5-232 [213915]
        Other proteins in same PDB: d3nf4a2, d3nf4b2
        automated match to d1ukwa2
        complexed with fad, na
    2. Domains for 3pfd:
      1. 1691884Domain d3pfda1: 3pfd A:18-238 [214756]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
      2. 1691885Domain d3pfdb1: 3pfd B:18-238 [214758]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
      3. 1691886Domain d3pfdc1: 3pfd C:19-238 [214760]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
      4. 1691887Domain d3pfdd1: 3pfd D:18-238 [214762]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
  14. 1691890Oscillatoria sp. [TaxId:272129] [229249] (1 PDB entry)
  15. 1691899Podospora anserina [TaxId:5145] [225905] (1 PDB entry)
  16. 1691904Solanum lycopersicum [TaxId:4081] [255173] (1 PDB entry)
  17. 1691908Thermus thermophilus HB8 [TaxId:300852] [225240] (1 PDB entry)

More info for Protein automated matches from e.6.1.0: automated matches

Timeline for Protein automated matches from e.6.1.0: automated matches: