SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families)
flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
Family e.6.1.0: automated matches [227203] (1 protein)
not a true family
Protein automated matches [226934] (14 species)
not a true protein

Species:

Acidaminococcus fermentans [TaxId:591001] [236041] (1 PDB entry)
- Domains for 4l1f:
  1. Domain d4l1fa1: 4l1f A:1-228 [236042]
    Other proteins in same PDB: d4l1fa2, d4l1fb2
    automated match to d4o5md1
    complexed with cos, fad, na, pdo, po4
  2. Domain d4l1fb1: 4l1f B:1-228 [236045]
    Other proteins in same PDB: d4l1fa2, d4l1fb2
    automated match to d4o5md1
    complexed with cos, fad, na, pdo, po4
Brucella suis [TaxId:204722] [230318] (1 PDB entry)
- Domains for 4o5m:
  1. Domain d4o5ma1: 4o5m A:-3-226 [235843]
    Other proteins in same PDB: d4o5ma2, d4o5mb2, d4o5mc2, d4o5md2
    automated match to d4o5md1
    complexed with ca, pg5
  2. Domain d4o5mb1: 4o5m B:-2-228 [230322]
    Other proteins in same PDB: d4o5ma2, d4o5mb2, d4o5mc2, d4o5md2
    automated match to d1buca2
    complexed with ca, pg5
  3. Domain d4o5mc1: 4o5m C:-3-228 [235845]
    Other proteins in same PDB: d4o5ma2, d4o5mb2, d4o5mc2, d4o5md2
    automated match to d4o5md1
    complexed with ca, pg5
  4. Domain d4o5md1: 4o5m D:-3-228 [230319]
    Other proteins in same PDB: d4o5ma2, d4o5mb2, d4o5mc2, d4o5md2
    automated match to d1buca2
    complexed with ca, pg5
Burkholderia cenocepacia [TaxId:216591] [228724] (1 PDB entry)
- Domains for 4n5f:
  1. Domain d4n5fa1: 4n5f A:0-228 [228728]
    Other proteins in same PDB: d4n5fa2, d4n5fb2
    automated match to d1ukwa2
    complexed with fda, unx
  2. Domain d4n5fb1: 4n5f B:0-228 [228725]
    Other proteins in same PDB: d4n5fa2, d4n5fb2
    automated match to d1ukwa2
    complexed with fda, unx
Burkholderia pseudomallei [TaxId:320372] [225462] (6 PDB entries)
1. Domains for 3d6b:
  1. Domain d3d6ba1: 3d6b A:4-242 [209017]
    Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
    automated match to d1siqa2
    complexed with 54d
  2. Domain d3d6bb1: 3d6b B:4-242 [209019]
    Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
    automated match to d1siqa2
    complexed with 54d
  3. Domain d3d6bc1: 3d6b C:4-242 [209021]
    Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
    automated match to d1siqa2
    complexed with 54d
  4. Domain d3d6bd1: 3d6b D:3-242 [209023]
    Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
    automated match to d1siqa2
    complexed with 54d
2. Domains for 3eom:
  1. Domain d3eoma1: 3eom A:4-242 [209572]
    Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
    automated match to d1siqa2
  2. Domain d3eomb1: 3eom B:4-242 [209574]
    Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
    automated match to d1siqa2
  3. Domain d3eomc1: 3eom C:3-242 [209576]
    Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
    automated match to d1siqa2
  4. Domain d3eomd1: 3eom D:3-242 [209578]
    Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
    automated match to d1siqa2
3. Domains for 3eon:
  1. Domain d3eona1: 3eon A:4-242 [209580]
    Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
    automated match to d1siqa2
    complexed with 341
  2. Domain d3eonb1: 3eon B:4-242 [209582]
    Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
    automated match to d1siqa2
    complexed with 341
  3. Domain d3eonc1: 3eon C:4-242 [209584]
    Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
    automated match to d1siqa2
    complexed with 341
  4. Domain d3eond1: 3eon D:3-242 [209586]
    Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
    automated match to d1siqa2
    complexed with 341
4. Domains for 3gnc:
  1. Domain d3gnca1: 3gnc A:3-242 [210609]
    Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
    automated match to d1siqa2
    complexed with epe, qqq, so4
  2. Domain d3gncb1: 3gnc B:4-242 [210611]
    Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
    automated match to d1siqa2
    complexed with epe, qqq, so4
  3. Domain d3gncc1: 3gnc C:4-242 [210613]
    Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
    automated match to d1siqa2
    complexed with epe, qqq, so4
  4. Domain d3gncd1: 3gnc D:3-242 [210615]
    Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
    automated match to d1siqa2
    complexed with epe, qqq, so4
5. Domains for 3gqt:
  1. Domain d3gqta1: 3gqt A:4-242 [210632]
    Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
    automated match to d1siqa2
    complexed with ufo
  2. Domain d3gqtb1: 3gqt B:4-242 [210634]
    Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
    automated match to d1siqa2
    complexed with ufo
  3. Domain d3gqtc1: 3gqt C:4-242 [210636]
    Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
    automated match to d1siqa2
    complexed with ufo
  4. Domain d3gqtd1: 3gqt D:4-242 [210638]
    Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
    automated match to d1siqa2
    complexed with ufo
6. Domains for 3ii9:
  1. Domain d3ii9a1: 3ii9 A:3-242 [211700]
    Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
    automated match to d1siqa2
    complexed with gol, mg, peg, pg4, pge
  2. Domain d3ii9b1: 3ii9 B:4-242 [211702]
    Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
    automated match to d1siqa2
    complexed with gol, mg, peg, pg4, pge
  3. Domain d3ii9c1: 3ii9 C:4-242 [211704]
    Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
    automated match to d1siqa2
    complexed with gol, mg, peg, pg4, pge
  4. Domain d3ii9d1: 3ii9 D:3-242 [211706]
    Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
    automated match to d1siqa2
    complexed with gol, mg, peg, pg4, pge
Burkholderia thailandensis [TaxId:271848] [228976] (1 PDB entry)
- Domains for 4m9a:
  1. Domain d4m9aa1: 4m9a A:2-228 [228978]
    Other proteins in same PDB: d4m9aa2, d4m9ab2, d4m9ac2, d4m9ad2
    automated match to d1ukwa2
    complexed with fda
  2. Domain d4m9ab1: 4m9a B:2-228 [228979]
    Other proteins in same PDB: d4m9aa2, d4m9ab2, d4m9ac2, d4m9ad2
    automated match to d1ukwa2
    complexed with fda
  3. Domain d4m9ac1: 4m9a C:2-228 [228980]
    Other proteins in same PDB: d4m9aa2, d4m9ab2, d4m9ac2, d4m9ad2
    automated match to d1ukwa2
    complexed with fda
  4. Domain d4m9ad1: 4m9a D:2-228 [228977]
    Other proteins in same PDB: d4m9aa2, d4m9ab2, d4m9ac2, d4m9ad2
    automated match to d1ukwa2
    complexed with fda
Desulfococcus multivorans [TaxId:897] [225943] (2 PDB entries)
1. Domains for 3mpi:
  1. Domain d3mpia1: 3mpi A:1-231 [213511]
    Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
    automated match to d3mdea2
    complexed with fad, gra
  2. Domain d3mpib1: 3mpi B:1-231 [213513]
    Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
    automated match to d3mdea2
    complexed with fad, gra
  3. Domain d3mpic1: 3mpi C:1-231 [213515]
    Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
    automated match to d3mdea2
    complexed with fad, gra
  4. Domain d3mpid1: 3mpi D:1-231 [213517]
    Other proteins in same PDB: d3mpia2, d3mpib2, d3mpic2, d3mpid2
    automated match to d3mdea2
    complexed with fad, gra
2. Domains for 3mpj:
  1. Domain d3mpja1: 3mpj A:1-231 [213519]
    Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
    automated match to d3mdea2
    complexed with cl, fad
  2. Domain d3mpjb1: 3mpj B:1-231 [213521]
    Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
    automated match to d3mdea2
    complexed with cl, fad
  3. Domain d3mpjd1: 3mpj D:1-231 [213523]
    Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
    automated match to d3mdea2
    complexed with cl, fad
  4. Domain d3mpje1: 3mpj E:1-231 [213525]
    Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
    automated match to d3mdea2
    complexed with cl, fad
  5. Domain d3mpjf1: 3mpj F:1-231 [213527]
    Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
    automated match to d3mdea2
    complexed with cl, fad
  6. Domain d3mpjg1: 3mpj G:1-231 [213529]
    Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjd2, d3mpje2, d3mpjf2, d3mpjg2
    automated match to d3mdea2
    complexed with cl, fad
Geobacillus kaustophilus [TaxId:235909] [225262] (1 PDB entry)
- Domains for 2pg0:
  1. Domain d2pg0a1: 2pg0 A:6-235 [205519]
    Other proteins in same PDB: d2pg0a2, d2pg0b2
    automated match to d1ivha2
    complexed with fad
  2. Domain d2pg0b1: 2pg0 B:8-235 [205521]
    Other proteins in same PDB: d2pg0a2, d2pg0b2
    automated match to d1ivha2
    complexed with fad
Human (Homo sapiens) [TaxId:9606] [225242] (2 PDB entries)
1. Domains for 2jif:
  1. Domain d2jifa1: 2jif A:52-279 [205049]
    Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
    automated match to d1rx0a2
    complexed with cl, cos, edo, fad
  2. Domain d2jifb1: 2jif B:56-279 [205051]
    Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
    automated match to d1rx0a2
    complexed with cl, cos, edo, fad
  3. Domain d2jifc1: 2jif C:56-279 [205053]
    Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
    automated match to d1rx0a2
    complexed with cl, cos, edo, fad
  4. Domain d2jifd1: 2jif D:52-279 [205055]
    Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
    automated match to d1rx0a2
    complexed with cl, cos, edo, fad
2. Domains for 2wbi:
  1. Domain d2wbia1: 2wbi A:22-265 [206759]
    Other proteins in same PDB: d2wbia2, d2wbib2
    automated match to d1ukwa2
    complexed with fad, po4, unx
  2. Domain d2wbib1: 2wbi B:22-265 [206761]
    Other proteins in same PDB: d2wbia2, d2wbib2
    automated match to d1ukwa2
    complexed with fad, po4, unx
Mycobacterium abscessus [TaxId:561007] [226108] (2 PDB entries)
1. Domains for 3r7k:
  1. Domain d3r7ka1: 3r7k A:21-248 [215630]
    Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
    automated match to d1rx0a2
    complexed with fda, k
  2. Domain d3r7kb1: 3r7k B:21-248 [215632]
    Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
    automated match to d1rx0a2
    complexed with fda, k
  3. Domain d3r7kc1: 3r7k C:23-248 [215634]
    Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
    automated match to d1rx0a2
    complexed with fda, k
  4. Domain d3r7kd1: 3r7k D:23-248 [215636]
    Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
    automated match to d1rx0a2
    complexed with fda, k
2. Domain for 4hr3:
  - Domain d4hr3a1: 4hr3 A:3-253 [222716]
    Other proteins in same PDB: d4hr3a2
    automated match to d1egda2
    complexed with fad
Mycobacterium smegmatis [TaxId:246196] [226167] (3 PDB entries)
1. Domain for 3sf6:
  - Domain d3sf6a1: 3sf6 A:13-246 [216377]
    Other proteins in same PDB: d3sf6a2
    automated match to d1siqa2
    complexed with cl, edo, fda, so4, unl
2. Domains for 3swo:
  1. Domain d3swoa1: 3swo A:9-243 [216588]
    Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
    automated match to d1siqa2
    complexed with edo, fda, unx
  2. Domain d3swob1: 3swo B:11-243 [216590]
    Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
    automated match to d1siqa2
    complexed with edo, fda, unx
  3. Domain d3swoc1: 3swo C:11-243 [216592]
    Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
    automated match to d1siqa2
    complexed with edo, fda, unx
  4. Domain d3swod1: 3swo D:11-243 [216594]
    Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
    automated match to d1siqa2
    complexed with edo, fda, unx
3. Domains for 4iv6:
  1. Domain d4iv6a1: 4iv6 A:3-226 [223417]
    Other proteins in same PDB: d4iv6a2, d4iv6b2
    automated match to d1ukwa2
    complexed with fda
  2. Domain d4iv6b1: 4iv6 B:2-226 [223419]
    Other proteins in same PDB: d4iv6a2, d4iv6b2
    automated match to d1ukwa2
    complexed with fda
Mycobacterium thermoresistibile [TaxId:1797] [225912] (2 PDB entries)
1. Domains for 3nf4:
  1. Domain d3nf4a1: 3nf4 A:5-232 [213913]
    Other proteins in same PDB: d3nf4a2, d3nf4b2
    automated match to d1ukwa2
    complexed with fad, na
  2. Domain d3nf4b1: 3nf4 B:5-232 [213915]
    Other proteins in same PDB: d3nf4a2, d3nf4b2
    automated match to d1ukwa2
    complexed with fad, na
2. Domains for 3pfd:
  1. Domain d3pfda1: 3pfd A:18-238 [214756]
    Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
    automated match to d1jqia2
    complexed with fda, iod
  2. Domain d3pfdb1: 3pfd B:18-238 [214758]
    Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
    automated match to d1jqia2
    complexed with fda, iod
  3. Domain d3pfdc1: 3pfd C:19-238 [214760]
    Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
    automated match to d1jqia2
    complexed with fda, iod
  4. Domain d3pfdd1: 3pfd D:18-238 [214762]
    Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
    automated match to d1jqia2
    complexed with fda, iod
Oscillatoria sp. [TaxId:272129] [229249] (1 PDB entry)
- Domains for 4irn:
  1. Domain d4irna1: 4irn A:4-230 [235871]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
  2. Domain d4irnb1: 4irn B:4-230 [235877]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
  3. Domain d4irnc1: 4irn C:4-230 [235873]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
  4. Domain d4irnd1: 4irn D:4-230 [235883]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
  5. Domain d4irne1: 4irn E:4-230 [235875]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
  6. Domain d4irnf1: 4irn F:4-230 [229250]
    Other proteins in same PDB: d4irnf2
    automated match to d1ukwa2
    complexed with fad
  7. Domain d4irng1: 4irn G:4-230 [235879]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
  8. Domain d4irnh1: 4irn H:4-230 [235881]
    Other proteins in same PDB: d4irna2, d4irnb2, d4irnc2, d4irnd2, d4irne2, d4irng2, d4irnh2
    automated match to d4irnf1
    complexed with fad
Podospora anserina [TaxId:5145] [225905] (1 PDB entry)
- Domains for 3mkh:
  1. Domain d3mkha1: 3mkh A:2-259 [213292]
    Other proteins in same PDB: d3mkha2, d3mkhb2, d3mkhc2, d3mkhd2
    automated match to d1egda2
    complexed with fad, mg, so4
  2. Domain d3mkhb1: 3mkh B:2-259 [213294]
    Other proteins in same PDB: d3mkha2, d3mkhb2, d3mkhc2, d3mkhd2
    automated match to d1egda2
    complexed with fad, mg, so4
  3. Domain d3mkhc1: 3mkh C:2-259 [213296]
    Other proteins in same PDB: d3mkha2, d3mkhb2, d3mkhc2, d3mkhd2
    automated match to d1egda2
    complexed with fad, mg, so4
  4. Domain d3mkhd1: 3mkh D:2-259 [213298]
    Other proteins in same PDB: d3mkha2, d3mkhb2, d3mkhc2, d3mkhd2
    automated match to d1egda2
    complexed with fad, mg, so4
Thermus thermophilus [TaxId:300852] [225240] (1 PDB entry)
- Domains for 2eba:
  1. Domain d2ebaa1: 2eba A:1-233 [204092]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  2. Domain d2ebac1: 2eba C:1-233 [204094]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  3. Domain d2ebad1: 2eba D:1-233 [204096]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  4. Domain d2ebae1: 2eba E:1-233 [204098]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  5. Domain d2ebaf1: 2eba F:1-233 [204100]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  6. Domain d2ebag1: 2eba G:1-233 [204102]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  7. Domain d2ebah1: 2eba H:1-233 [204104]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad
  8. Domain d2ebai1: 2eba I:1-233 [204106]
    Other proteins in same PDB: d2ebaa2, d2ebac2, d2ebad2, d2ebae2, d2ebaf2, d2ebag2, d2ebah2, d2ebai2
    automated match to d1siqa2
    complexed with fad

More info for Protein automated matches from e.6.1.0: automated matches

Timeline for Protein automated matches from e.6.1.0: automated matches:

Protein automated matches from e.6.1.0: automated matches is new in SCOPe 2.03-stable
Protein automated matches from e.6.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from e.6.1.0: automated matches appears in the current release, SCOPe 2.08