Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2219439Fold e.6: Acyl-CoA dehydrogenase NM domain-like [56644] (1 superfamily)
    2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
  4. 2219440Superfamily e.6.1: Acyl-CoA dehydrogenase NM domain-like [56645] (3 families) (S)
    flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
  5. 2219585Family e.6.1.0: automated matches [227203] (1 protein)
    not a true family
  6. 2219586Protein automated matches [226934] (25 species)
    not a true protein

Species:

  1. 2219587Acidaminococcus fermentans [TaxId:591001] [236041] (1 PDB entry)
  2. 2219590Advenella mimigardefordensis [TaxId:1247726] [273374] (2 PDB entries)
    1. Domains for 5af7:
      1. 2219591Domain d5af7a1: 5af7 A:3-232 [273381]
        Other proteins in same PDB: d5af7a2, d5af7b2
        automated match to d1jqia2
        complexed with fad, gol
      2. 2219592Domain d5af7b1: 5af7 B:3-232 [273388]
        Other proteins in same PDB: d5af7a2, d5af7b2
        automated match to d1jqia2
        complexed with fad, gol
    2. Domains for 5ahs:
      1. 2219593Domain d5ahsa1: 5ahs A:2-232 [273383]
        Other proteins in same PDB: d5ahsa2, d5ahsb2, d5ahsc2, d5ahsd2, d5ahse2, d5ahsf2
        automated match to d1jqia2
        complexed with coa, fad, sin, so4
      2. 2219594Domain d5ahsb1: 5ahs B:2-232 [273380]
        Other proteins in same PDB: d5ahsa2, d5ahsb2, d5ahsc2, d5ahsd2, d5ahse2, d5ahsf2
        automated match to d1jqia2
        complexed with coa, fad, sin, so4
      3. 2219595Domain d5ahsc1: 5ahs C:2-232 [273382]
        Other proteins in same PDB: d5ahsa2, d5ahsb2, d5ahsc2, d5ahsd2, d5ahse2, d5ahsf2
        automated match to d1jqia2
        complexed with coa, fad, sin, so4
      4. 2219596Domain d5ahsd1: 5ahs D:3-232 [273394]
        Other proteins in same PDB: d5ahsa2, d5ahsb2, d5ahsc2, d5ahsd2, d5ahse2, d5ahsf2
        automated match to d1jqia2
        complexed with coa, fad, sin, so4
      5. 2219597Domain d5ahse1: 5ahs E:2-232 [273399]
        Other proteins in same PDB: d5ahsa2, d5ahsb2, d5ahsc2, d5ahsd2, d5ahse2, d5ahsf2
        automated match to d1jqia2
        complexed with coa, fad, sin, so4
      6. 2219598Domain d5ahsf1: 5ahs F:2-232 [273397]
        Other proteins in same PDB: d5ahsa2, d5ahsb2, d5ahsc2, d5ahsd2, d5ahse2, d5ahsf2
        automated match to d1jqia2
        complexed with coa, fad, sin, so4
  3. 2219599Brucella abortus [TaxId:1104320] [261997] (1 PDB entry)
  4. 2219604Brucella abortus [TaxId:359391] [259594] (1 PDB entry)
  5. 2219609Brucella suis [TaxId:204722] [230318] (1 PDB entry)
  6. 2219614Burkholderia cenocepacia [TaxId:216591] [228724] (1 PDB entry)
  7. 2219617Burkholderia pseudomallei [TaxId:320372] [225462] (6 PDB entries)
    1. Domains for 3d6b:
      1. 2219630Domain d3d6ba1: 3d6b A:4-242 [209017]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
      2. 2219631Domain d3d6bb1: 3d6b B:4-242 [209019]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
      3. 2219632Domain d3d6bc1: 3d6b C:4-242 [209021]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
      4. 2219633Domain d3d6bd1: 3d6b D:3-242 [209023]
        Other proteins in same PDB: d3d6ba2, d3d6bb2, d3d6bc2, d3d6bd2
        automated match to d1siqa2
        complexed with 54d
    2. Domains for 3eom:
      1. 2219634Domain d3eoma1: 3eom A:4-242 [209572]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
      2. 2219635Domain d3eomb1: 3eom B:4-242 [209574]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
      3. 2219636Domain d3eomc1: 3eom C:3-242 [209576]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
      4. 2219637Domain d3eomd1: 3eom D:3-242 [209578]
        Other proteins in same PDB: d3eoma2, d3eomb2, d3eomc2, d3eomd2
        automated match to d1siqa2
    3. Domains for 3eon:
      1. 2219638Domain d3eona1: 3eon A:4-242 [209580]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
      2. 2219639Domain d3eonb1: 3eon B:4-242 [209582]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
      3. 2219640Domain d3eonc1: 3eon C:4-242 [209584]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
      4. 2219641Domain d3eond1: 3eon D:3-242 [209586]
        Other proteins in same PDB: d3eona2, d3eonb2, d3eonc2, d3eond2
        automated match to d1siqa2
        complexed with 341
    4. Domains for 3gnc:
      1. 2219626Domain d3gnca1: 3gnc A:3-242 [210609]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
      2. 2219627Domain d3gncb1: 3gnc B:4-242 [210611]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
      3. 2219628Domain d3gncc1: 3gnc C:4-242 [210613]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
      4. 2219629Domain d3gncd1: 3gnc D:3-242 [210615]
        Other proteins in same PDB: d3gnca2, d3gncb2, d3gncc2, d3gncd2
        automated match to d1siqa2
        complexed with epe, qqq, so4
    5. Domains for 3gqt:
      1. 2219622Domain d3gqta1: 3gqt A:4-242 [210632]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
      2. 2219623Domain d3gqtb1: 3gqt B:4-242 [210634]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
      3. 2219624Domain d3gqtc1: 3gqt C:4-242 [210636]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
      4. 2219625Domain d3gqtd1: 3gqt D:4-242 [210638]
        Other proteins in same PDB: d3gqta2, d3gqtb2, d3gqtc2, d3gqtd2
        automated match to d1siqa2
        complexed with ufo
    6. Domains for 3ii9:
      1. 2219618Domain d3ii9a1: 3ii9 A:3-242 [211700]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
      2. 2219619Domain d3ii9b1: 3ii9 B:4-242 [211702]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
      3. 2219620Domain d3ii9c1: 3ii9 C:4-242 [211704]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
      4. 2219621Domain d3ii9d1: 3ii9 D:3-242 [211706]
        Other proteins in same PDB: d3ii9a2, d3ii9b2, d3ii9c2, d3ii9d2
        automated match to d1siqa2
        complexed with gol, mg, peg, pg4, pge
  8. 2219642Burkholderia thailandensis [TaxId:271848] [228976] (1 PDB entry)
  9. 2219647Desulfococcus multivorans [TaxId:897] [225943] (2 PDB entries)
    1. Domains for 3mpi:
      1. 2219648Domain d3mpia1: 3mpi A:1-231 [213511]
        Other proteins in same PDB: d3mpia2, d3mpia3, d3mpib2, d3mpib3, d3mpic2, d3mpic3, d3mpid2, d3mpid3
        automated match to d3mdea2
        complexed with fad, gra
      2. 2219649Domain d3mpib1: 3mpi B:1-231 [213513]
        Other proteins in same PDB: d3mpia2, d3mpia3, d3mpib2, d3mpib3, d3mpic2, d3mpic3, d3mpid2, d3mpid3
        automated match to d3mdea2
        complexed with fad, gra
      3. 2219650Domain d3mpic1: 3mpi C:1-231 [213515]
        Other proteins in same PDB: d3mpia2, d3mpia3, d3mpib2, d3mpib3, d3mpic2, d3mpic3, d3mpid2, d3mpid3
        automated match to d3mdea2
        complexed with fad, gra
      4. 2219651Domain d3mpid1: 3mpi D:1-231 [213517]
        Other proteins in same PDB: d3mpia2, d3mpia3, d3mpib2, d3mpib3, d3mpic2, d3mpic3, d3mpid2, d3mpid3
        automated match to d3mdea2
        complexed with fad, gra
    2. Domains for 3mpj:
      1. 2219652Domain d3mpja1: 3mpj A:1-231 [213519]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjb3, d3mpjd2, d3mpjd3, d3mpje2, d3mpje3, d3mpjf2, d3mpjf3, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      2. 2219653Domain d3mpjb1: 3mpj B:1-231 [213521]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjb3, d3mpjd2, d3mpjd3, d3mpje2, d3mpje3, d3mpjf2, d3mpjf3, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      3. 2219654Domain d3mpjd1: 3mpj D:1-231 [213523]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjb3, d3mpjd2, d3mpjd3, d3mpje2, d3mpje3, d3mpjf2, d3mpjf3, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      4. 2219655Domain d3mpje1: 3mpj E:1-231 [213525]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjb3, d3mpjd2, d3mpjd3, d3mpje2, d3mpje3, d3mpjf2, d3mpjf3, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      5. 2219656Domain d3mpjf1: 3mpj F:1-231 [213527]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjb3, d3mpjd2, d3mpjd3, d3mpje2, d3mpje3, d3mpjf2, d3mpjf3, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
      6. 2219657Domain d3mpjg1: 3mpj G:1-231 [213529]
        Other proteins in same PDB: d3mpja2, d3mpjb2, d3mpjb3, d3mpjd2, d3mpjd3, d3mpje2, d3mpje3, d3mpjf2, d3mpjf3, d3mpjg2
        automated match to d3mdea2
        complexed with cl, fad
  10. 2219658Geobacillus kaustophilus [TaxId:235909] [225262] (1 PDB entry)
  11. 2219661Human (Homo sapiens) [TaxId:9606] [225242] (2 PDB entries)
    1. Domains for 2jif:
      1. 2219662Domain d2jifa1: 2jif A:52-279 [205049]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
      2. 2219663Domain d2jifb1: 2jif B:56-279 [205051]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
      3. 2219664Domain d2jifc1: 2jif C:56-279 [205053]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
      4. 2219665Domain d2jifd1: 2jif D:52-279 [205055]
        Other proteins in same PDB: d2jifa2, d2jifb2, d2jifc2, d2jifd2
        automated match to d1rx0a2
        complexed with cl, cos, edo, fad
    2. Domains for 2wbi:
      1. 2219666Domain d2wbia1: 2wbi A:22-265 [206759]
        Other proteins in same PDB: d2wbia2, d2wbib2
        automated match to d1ukwa2
        complexed with fad, po4, unx
      2. 2219667Domain d2wbib1: 2wbi B:22-265 [206761]
        Other proteins in same PDB: d2wbia2, d2wbib2
        automated match to d1ukwa2
        complexed with fad, po4, unx
  12. 2219668Mycobacterium abscessus [TaxId:561007] [226108] (2 PDB entries)
    1. Domains for 3r7k:
      1. 2219670Domain d3r7ka1: 3r7k A:21-248 [215630]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
      2. 2219671Domain d3r7kb1: 3r7k B:21-248 [215632]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
      3. 2219672Domain d3r7kc1: 3r7k C:23-248 [215634]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
      4. 2219673Domain d3r7kd1: 3r7k D:23-248 [215636]
        Other proteins in same PDB: d3r7ka2, d3r7kb2, d3r7kc2, d3r7kd2
        automated match to d1rx0a2
        complexed with fda, k
    2. Domain for 4hr3:
  13. 2219674Mycobacterium smegmatis [TaxId:246196] [226167] (3 PDB entries)
    1. Domain for 3sf6:
    2. Domains for 3swo:
      1. 2219675Domain d3swoa1: 3swo A:9-243 [216588]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
      2. 2219676Domain d3swob1: 3swo B:11-243 [216590]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
      3. 2219677Domain d3swoc1: 3swo C:11-243 [216592]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
      4. 2219678Domain d3swod1: 3swo D:11-243 [216594]
        Other proteins in same PDB: d3swoa2, d3swob2, d3swoc2, d3swod2
        automated match to d1siqa2
        complexed with edo, fda, unx
    3. Domains for 4iv6:
      1. 2219680Domain d4iv6a1: 4iv6 A:3-226 [223417]
        Other proteins in same PDB: d4iv6a2, d4iv6b2
        automated match to d1ukwa2
        complexed with fda
      2. 2219681Domain d4iv6b1: 4iv6 B:2-226 [223419]
        Other proteins in same PDB: d4iv6a2, d4iv6b2
        automated match to d1ukwa2
        complexed with fda
  14. 2219682Mycobacterium thermoresistibile [TaxId:1797] [225912] (2 PDB entries)
    1. Domains for 3nf4:
      1. 2219687Domain d3nf4a1: 3nf4 A:5-232 [213913]
        Other proteins in same PDB: d3nf4a2, d3nf4b2
        automated match to d1ukwa2
        complexed with fad, na
      2. 2219688Domain d3nf4b1: 3nf4 B:5-232 [213915]
        Other proteins in same PDB: d3nf4a2, d3nf4b2
        automated match to d1ukwa2
        complexed with fad, na
    2. Domains for 3pfd:
      1. 2219683Domain d3pfda1: 3pfd A:18-238 [214756]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
      2. 2219684Domain d3pfdb1: 3pfd B:18-238 [214758]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
      3. 2219685Domain d3pfdc1: 3pfd C:19-238 [214760]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
      4. 2219686Domain d3pfdd1: 3pfd D:18-238 [214762]
        Other proteins in same PDB: d3pfda2, d3pfdb2, d3pfdc2, d3pfdd2
        automated match to d1jqia2
        complexed with fda, iod
  15. 2219689Oscillatoria sp. [TaxId:272129] [229249] (1 PDB entry)
  16. 2219698Podospora anserina [TaxId:5145] [225905] (1 PDB entry)
  17. 2219703Slackia heliotrinireducens [TaxId:471855] [268754] (1 PDB entry)
  18. 2219705Solanum lycopersicum [TaxId:4081] [255173] (1 PDB entry)
  19. 2219709Thermus thermophilus HB8 [TaxId:300852] [225240] (1 PDB entry)
  20. 2219718Thermus thermophilus [TaxId:300852] [267775] (1 PDB entry)
  21. 2271694Burkholderia phymatum [TaxId:391038] [314995] (1 PDB entry)
  22. 2274932Burkholderia xenovorans [TaxId:266265] [318233] (1 PDB entry)
  23. 2278512Caenorhabditis elegans [TaxId:6239] [321813] (3 PDB entries)
    1. Domain for 5k3g:
    2. Domains for 5k3i:
      1. 2278907Domain d5k3id1: 5k3i D:2-282 [322208]
        Other proteins in same PDB: d5k3ic2, d5k3ic3, d5k3id2, d5k3id3, d5k3if2, d5k3if3, d5k3ig2, d5k3ig3
        automated match to d2ddha3
        complexed with atp, fad, mg
      2. 2279005Domain d5k3ic1: 5k3i C:2-282 [322306]
        Other proteins in same PDB: d5k3ic2, d5k3ic3, d5k3id2, d5k3id3, d5k3if2, d5k3if3, d5k3ig2, d5k3ig3
        automated match to d2ddha3
        complexed with atp, fad, mg
      3. 2279013Domain d5k3ig1: 5k3i G:2-281 [322314]
        Other proteins in same PDB: d5k3ic2, d5k3ic3, d5k3id2, d5k3id3, d5k3if2, d5k3if3, d5k3ig2, d5k3ig3
        automated match to d2ddha3
        complexed with atp, fad, mg
      4. 2279136Domain d5k3if1: 5k3i F:2-278 [322437]
        Other proteins in same PDB: d5k3ic2, d5k3ic3, d5k3id2, d5k3id3, d5k3if2, d5k3if3, d5k3ig2, d5k3ig3
        automated match to d2ddha3
        complexed with atp, fad, mg
    3. Domains for 5k3j:
      1. 2278915Domain d5k3ja1: 5k3j A:3-278 [322216]
        Other proteins in same PDB: d5k3ja2, d5k3ja3, d5k3ja4, d5k3jb2, d5k3jb3, d5k3jb4
        automated match to d2ddha3
        complexed with 6qa, atp, fad, mg
      2. 2279142Domain d5k3jb1: 5k3j B:2-278 [322443]
        Other proteins in same PDB: d5k3ja2, d5k3ja3, d5k3ja4, d5k3jb2, d5k3jb3, d5k3jb4
        automated match to d2ddha3
        complexed with 6qa, atp, fad, mg
  24. 2294545Bacillus subtilis [TaxId:224308] [337846] (1 PDB entry)
  25. 2298805Clostridioides difficile [TaxId:1496] [342106] (1 PDB entry)

More info for Protein automated matches from e.6.1.0: automated matches

Timeline for Protein automated matches from e.6.1.0: automated matches: