SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004058Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. 2004426Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (5 families) (S)
  5. 2004750Family a.102.4.0: automated matches [227201] (1 protein)
    not a true family
  6. 2004751Protein automated matches [226931] (9 species)
    not a true protein

Species:

  1. 2004752Artemisia annua [TaxId:35608] [226616] (2 PDB entries)
    1. Domain for 4fjq:
    2. Domain for 4gax:
  2. 2004755Gossypium arboreum [TaxId:29729] [225678] (2 PDB entries)
    1. Domains for 3g4d:
      1. 2004756Domain d3g4da1: 3g4d A:25-226 [210351]
        Other proteins in same PDB: d3g4da2, d3g4db2
        automated match to d1hxga1
        complexed with bme, gol
      2. 2004757Domain d3g4db1: 3g4d B:28-226 [210353]
        Other proteins in same PDB: d3g4da2, d3g4db2
        automated match to d1hxga1
        complexed with bme, gol
    2. Domains for 3g4f:
      1. 2004758Domain d3g4fa1: 3g4f A:25-226 [210355]
        Other proteins in same PDB: d3g4fa2, d3g4fb2
        automated match to d1hxga1
        complexed with bme, fpf, mg
      2. 2004759Domain d3g4fb1: 3g4f B:25-226 [210357]
        Other proteins in same PDB: d3g4fa2, d3g4fb2
        automated match to d1hxga1
        complexed with bme, fpf, mg
  3. 2004760Mentha spicata [TaxId:29719] [225228] (2 PDB entries)
    1. Domains for 2ong:
      1. 2004763Domain d2onga1: 2ong A:57-271 [205333]
        Other proteins in same PDB: d2onga2, d2ongb2
        automated match to d1n1ba1
        complexed with btb, fpg, mn
      2. 2004764Domain d2ongb1: 2ong B:57-271 [205335]
        Other proteins in same PDB: d2onga2, d2ongb2
        automated match to d1n1ba1
        complexed with btb, fpg, mn
    2. Domains for 2onh:
      1. 2004761Domain d2onha1: 2onh A:57-271 [205337]
        Other proteins in same PDB: d2onha2, d2onhb2
        automated match to d1n1ba1
        complexed with btb, f3p, mn
      2. 2004762Domain d2onhb1: 2onh B:57-271 [205339]
        Other proteins in same PDB: d2onha2, d2onhb2
        automated match to d1n1ba1
        complexed with btb, f3p, mn
  4. 2004765Populus tremula [TaxId:80863] [225927] (2 PDB entries)
    1. Domains for 3n0f:
      1. 2004766Domain d3n0fa1: 3n0f A:57-265 [213665]
        Other proteins in same PDB: d3n0fa2, d3n0fb2
        automated match to d1hxga1
      2. 2004767Domain d3n0fb1: 3n0f B:57-265 [213667]
        Other proteins in same PDB: d3n0fa2, d3n0fb2
        automated match to d1hxga1
    2. Domains for 3n0g:
      1. 2004768Domain d3n0ga1: 3n0g A:63-265 [213669]
        Other proteins in same PDB: d3n0ga2, d3n0gb2
        automated match to d1hxga1
        complexed with dst, mg
      2. 2004769Domain d3n0gb1: 3n0g B:63-265 [213671]
        Other proteins in same PDB: d3n0ga2, d3n0gb2
        automated match to d1hxga1
        complexed with dst, mg
  5. 2004770Salvia fruticosa [TaxId:268906] [225284] (1 PDB entry)
  6. 2004773Thymus vulgaris [TaxId:49992] [280258] (1 PDB entry)
  7. 2004776Tobacco (Nicotiana tabacum) [TaxId:4097] [225865] (22 PDB entries)
    1. Domain for 3lz9:
    2. Domain for 3m00:
    3. Domain for 3m01:
    4. Domain for 3m02:
    5. Domain for 4rnq:
    6. Domain for 5dhi:
    7. Domain for 5dhk:
    8. Domain for 5ik0:
    9. Domain for 5ik6:
    10. Domain for 5ik9:
    11. Domain for 5ika:
    12. Domain for 5ikh:
    13. Domain for 5il3:
    14. Domain for 5il8:
    15. Domain for 5ild:
    16. Domain for 5ilh:
    17. Domain for 5ili:
    18. Domain for 5ilj:
    19. Domain for 5ilk:
    20. Domain for 5ily:
    21. Domain for 5ilz:
    22. Domain for 5im1:
  8. 2288881Citrus sinensis [TaxId:2711] [332182] (3 PDB entries)
    1. Domain for 5uv0:
    2. Domain for 5uv1:
    3. Domain for 5uv2:
  9. 2290432Hyoscyamus muticus [TaxId:35626] [333733] (1 PDB entry)

More info for Protein automated matches from a.102.4.0: automated matches

Timeline for Protein automated matches from a.102.4.0: automated matches: