SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families)
Family b.82.3.0: automated matches [227198] (1 protein)
not a true family
Protein automated matches [226927] (14 species)
not a true protein

Species:

African malaria mosquito (Anopheles gambiae) [TaxId:7165] [226702] (1 PDB entry)
- Domain for 4l11:
  - Domain d4l11a_: 4l11 A: [224546]
    automated match to d1q3ea_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233085] (1 PDB entry)
- Domains for 3of1:
  1. Domain d3of1a1: 3of1 A:171-293 [233086]
    automated match to d1cx4a1
    complexed with cmp
  2. Domain d3of1a2: 3of1 A:294-416 [233087]
    automated match to d1cx4a2
    complexed with cmp
Carboxydothermus hydrogenoformans [TaxId:129958] [225203] (1 PDB entry)
- Domains for 2fmy:
  1. Domain d2fmya1: 2fmy A:5-138 [204235]
    Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3
    automated match to d1ft9a2
    complexed with hem, imd
  2. Domain d2fmyb1: 2fmy B:1005-1138 [204237]
    Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3
    automated match to d1ft9a2
    complexed with hem, imd
  3. Domain d2fmyc1: 2fmy C:2005-2138 [204239]
    Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3
    automated match to d1ft9a2
    complexed with hem, imd
  4. Domain d2fmyd1: 2fmy D:3005-3138 [204241]
    Other proteins in same PDB: d2fmya2, d2fmya3, d2fmyb2, d2fmyb3, d2fmyc2, d2fmyc3, d2fmyd2, d2fmyd3
    automated match to d1ft9a2
    complexed with hem, imd
Corynebacterium glutamicum [TaxId:1718] [226339] (2 PDB entries)
1. Domains for 3r6s:
  1. Domain d3r6sa1: 3r6s A:3-147 [215597]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  2. Domain d3r6sb1: 3r6s B:3-147 [215599]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  3. Domain d3r6sc1: 3r6s C:3-147 [215601]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  4. Domain d3r6sd1: 3r6s D:3-147 [215603]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  5. Domain d3r6se1: 3r6s E:3-147 [215605]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
  6. Domain d3r6sf1: 3r6s F:3-147 [215607]
    Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
    automated match to d1g6na2
    complexed with cmp, hez
2. Domains for 4byy:
  1. Domain d4byya1: 4byy A:1-147 [257728]
    Other proteins in same PDB: d4byya2, d4byyb2
    automated match to d3r6sa1
    complexed with gol, po4
  2. Domain d4byyb1: 4byy B:3-147 [257727]
    Other proteins in same PDB: d4byya2, d4byyb2
    automated match to d3r6sa1
    complexed with gol, po4
Human (Homo sapiens) [TaxId:9606] [256346] (13 PDB entries)
1. Domain for 4ku7:
  - Domain d4ku7a_: 4ku7 A: [253445]
    automated match to d1u12b_
    complexed with iod, pcg
2. Domains for 4ku8:
  1. Domain d4ku8b_: 4ku8 B: [253446]
    Other proteins in same PDB: d4ku8c2
    automated match to d1u12b_
    complexed with gly
  2. Domain d4ku8c1: 4ku8 C:219-344 [253447]
    Other proteins in same PDB: d4ku8c2
    automated match to d1u12b_
    complexed with gly
3. Domain for 4qxk:
  - Domain d4qxka_: 4qxk A: [260950]
    automated match to d4ku8c_
    complexed with dod, na, pcg
4. Domains for 4z07:
  1. Domain d4z07a1: 4z07 A:92-227 [316458]
    automated match to d4z07c1
    complexed with ipa, pcg, so4
  2. Domain d4z07a2: 4z07 A:228-351 [316459]
    automated match to d4z07c2
    complexed with ipa, pcg, so4
  3. Domain d4z07c1: 4z07 C:94-227 [315523]
    automated match to d3of1a1
    complexed with ipa, pcg, so4
  4. Domain d4z07c2: 4z07 C:228-351 [315524]
    automated match to d3of1a2
    complexed with ipa, pcg, so4
  5. Domain d4z07e_: 4z07 E: [316460]
    automated match to d5c8wa_
    complexed with ipa, pcg, so4
5. Domains for 5c6c:
  1. Domain d5c6ca_: 5c6c A: [312844]
    automated match to d4offa_
    complexed with ca, cd, cmp, co, edo, na
  2. Domain d5c6cb_: 5c6c B: [312686]
    automated match to d4offa_
    complexed with ca, cd, cmp, co, edo, na
6. Domains for 5c8w:
  1. Domain d5c8wa_: 5c8w A: [312754]
    automated match to d4offa_
    complexed with mla, na, pcg
  2. Domain d5c8wb_: 5c8w B: [312713]
    automated match to d4offa_
    complexed with mla, na, pcg
  3. Domain d5c8wc_: 5c8w C: [312743]
    automated match to d4offa_
    complexed with mla, na, pcg
  4. Domain d5c8wd_: 5c8w D: [312803]
    automated match to d4offa_
    complexed with mla, na, pcg
  5. Domain d5c8we_: 5c8w E: [312845]
    automated match to d4offa_
    complexed with mla, na, pcg
  6. Domain d5c8wf_: 5c8w F: [312748]
    automated match to d4offa_
    complexed with mla, na, pcg
7. Domains for 5j48:
  1. Domain d5j48a1: 5j48 A:219-351 [332941]
    Other proteins in same PDB: d5j48a2, d5j48b2
    automated match to d4ku7a_
    complexed with 6fw, ca, edo, na
  2. Domain d5j48b1: 5j48 B:219-343 [332893]
    Other proteins in same PDB: d5j48a2, d5j48b2
    automated match to d4ku7a_
    complexed with 6fw, ca, edo, na
8. Domain for 5jax:
  - Domain d5jaxa_: 5jax A: [333270]
    automated match to d4ku7a_
    complexed with 6j7, ca, na
9. Domain for 5jd7:
  - Domain d5jd7a_: 5jd7 A: [337485]
    automated match to d4ku7a_
    complexed with 6jr
10. Domain for 5kjx:
  - Domain d5kjxa_: 5kjx A: [335997]
    automated match to d4ku7a_
    complexed with cmp
11. Domain for 5kjy:
  - Domain d5kjya_: 5kjy A: [336015]
    automated match to d4ku7a_
    complexed with cmp; mutant
12. Domain for 5kjz:
  - Domain d5kjza1: 5kjz A:234-381 [336011]
    Other proteins in same PDB: d5kjza2
    automated match to d4ku7a_
    complexed with gol, pcg; mutant
13. Domain for 5l0n:
  - Domain d5l0na_: 5l0n A: [337170]
    automated match to d4ku7a_
    complexed with 6za, ca, edo, so4
Malaria parasite (Plasmodium falciparum) [TaxId:5833] [311407] (1 PDB entry)
- Domain for 4off:
  - Domain d4offa_: 4off A: [307857]
    automated match to d4ku8c_
    complexed with so4
Mycobacterium tuberculosis [TaxId:1773] [231918] (4 PDB entries)
1. Domains for 3d0s:
  1. Domain d3d0sa1: 3d0s A:1-144 [231920]
    Other proteins in same PDB: d3d0sa2, d3d0sb2, d3d0sb3
    automated match to d3r6sf1
    complexed with cl
  2. Domain d3d0sb1: 3d0s B:1-144 [231919]
    Other proteins in same PDB: d3d0sa2, d3d0sb2, d3d0sb3
    automated match to d3r6sf1
    complexed with cl
2. Domains for 3i54:
  1. Domain d3i54a1: 3i54 A:1-144 [232550]
    Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
  2. Domain d3i54b1: 3i54 B:1-144 [232548]
    Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
  3. Domain d3i54c1: 3i54 C:18-144 [239347]
    Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
    automated match to d3i54b1
    protein/DNA complex; complexed with cmp
  4. Domain d3i54d1: 3i54 D:1-144 [239349]
    Other proteins in same PDB: d3i54a2, d3i54b2, d3i54b3, d3i54c2, d3i54d2, d3i54d3
    automated match to d3i54b1
    protein/DNA complex; complexed with cmp
3. Domains for 3i59:
  1. Domain d3i59a1: 3i59 A:1-144 [246714]
    Other proteins in same PDB: d3i59a2, d3i59a3, d3i59b2, d3i59b3
    automated match to d3i54b1
    protein/DNA complex; complexed with cl, n6r, n6s
  2. Domain d3i59b1: 3i59 B:1-141 [246716]
    Other proteins in same PDB: d3i59a2, d3i59a3, d3i59b2, d3i59b3
    automated match to d3i54b1
    protein/DNA complex; complexed with cl, n6r, n6s
4. Domains for 4a2u:
  1. Domain d4a2ua1: 4a2u A:1-144 [250900]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  2. Domain d4a2ub1: 4a2u B:1-144 [250902]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  3. Domain d4a2uc1: 4a2u C:1-144 [250904]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  4. Domain d4a2ud1: 4a2u D:17-144 [250906]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  5. Domain d4a2ue1: 4a2u E:1-144 [250908]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  6. Domain d4a2uf1: 4a2u F:1-144 [250910]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  7. Domain d4a2ug1: 4a2u G:1-144 [250912]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
  8. Domain d4a2uh1: 4a2u H:1-144 [250914]
    Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2uf3, d4a2ug2, d4a2uh2, d4a2uh3
    automated match to d3d0sa1
    complexed with cmp
Mycobacterium tuberculosis [TaxId:83332] [232366] (2 PDB entries)
1. Domains for 3h3u:
  1. Domain d3h3ua1: 3h3u A:2-144 [232368]
    Other proteins in same PDB: d3h3ua2, d3h3ub2
    automated match to d3r6sf1
    complexed with cmp, so4
  2. Domain d3h3ub1: 3h3u B:1-144 [232367]
    Other proteins in same PDB: d3h3ua2, d3h3ub2
    automated match to d3r6sf1
    complexed with cmp, so4
2. Domains for 3mzh:
  1. Domain d3mzha1: 3mzh A:1-144 [232961]
    Other proteins in same PDB: d3mzha2, d3mzha3, d3mzhb2, d3mzhb3
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
  2. Domain d3mzhb1: 3mzh B:1-144 [232960]
    Other proteins in same PDB: d3mzha2, d3mzha3, d3mzhb2, d3mzhb3
    automated match to d3r6sf1
    protein/DNA complex; complexed with cmp
Pseudomonas aeruginosa [TaxId:287] [267817] (1 PDB entry)
- Domains for 2z69:
  1. Domain d2z69a1: 2z69 A:1-150 [264628]
    Other proteins in same PDB: d2z69a2
    automated match to d2pqqa_
  2. Domain d2z69b_: 2z69 B: [264629]
    Other proteins in same PDB: d2z69a2
    automated match to d2pqqa_
  3. Domain d2z69c_: 2z69 C: [264630]
    Other proteins in same PDB: d2z69a2
    automated match to d2pqqa_
Spirochaeta thermophila [TaxId:665571] [311368] (2 PDB entries)
1. Domains for 4d7s:
  1. Domain d4d7sa_: 4d7s A: [307242]
    automated match to d2ptma_
    complexed with pcg
  2. Domain d4d7sb_: 4d7s B: [307243]
    automated match to d2ptma_
    complexed with pcg
2. Domains for 4d7t:
  1. Domain d4d7ta_: 4d7t A: [307244]
    automated match to d2ptma_
    complexed with cmp
  2. Domain d4d7tb_: 4d7t B: [307245]
    automated match to d2ptma_
    complexed with cmp
Streptomyces coelicolor [TaxId:100226] [255548] (1 PDB entry)
- Domains for 2pqq:
  1. Domain d2pqqa1: 2pqq A:1-145 [243493]
    Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2
    automated match to d3i54a1
    complexed with fmt
  2. Domain d2pqqb1: 2pqq B:1-145 [243494]
    Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2
    automated match to d3i54a1
    complexed with fmt
  3. Domain d2pqqc1: 2pqq C:2-145 [243495]
    Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2
    automated match to d3i54a1
    complexed with fmt
  4. Domain d2pqqd1: 2pqq D:3-145 [243496]
    Other proteins in same PDB: d2pqqa2, d2pqqa3, d2pqqb2, d2pqqc2, d2pqqd2
    automated match to d3i54a1
    complexed with fmt
Toxoplasma gondii [TaxId:5811] [316116] (1 PDB entry)
- Domains for 5j3u:
  1. Domain d5j3ua1: 5j3u A:158-278 [316824]
    Other proteins in same PDB: d5j3ua3
    automated match to d4jv4a1
    complexed with cmp, gol
  2. Domain d5j3ua2: 5j3u A:279-405 [316825]
    Other proteins in same PDB: d5j3ua3
    automated match to d4jv4a2
    complexed with cmp, gol
Xanthomonas campestris [TaxId:340] [225796] (1 PDB entry)
- Domains for 3iwz:
  1. Domain d3iwza1: 3iwz A:22-158 [211989]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
  2. Domain d3iwzb1: 3iwz B:22-158 [211991]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
  3. Domain d3iwzc1: 3iwz C:23-158 [211993]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
  4. Domain d3iwzd1: 3iwz D:22-158 [211995]
    Other proteins in same PDB: d3iwza2, d3iwzb2, d3iwzc2, d3iwzd2
    automated match to d2oz6a2
Zebrafish (Danio rerio) [TaxId:7955] [233796] (3 PDB entries)
1. Domains for 3ukn:
  1. Domain d3ukna_: 3ukn A: [233797]
    automated match to d4l11a_
  2. Domain d3uknb_: 3ukn B: [233798]
    automated match to d4l11a_
  3. Domain d3uknc_: 3ukn C: [233799]
    automated match to d4l11a_
2. Domains for 3ukt:
  1. Domain d3ukta_: 3ukt A: [250215]
    automated match to d3ukna_
  2. Domain d3uktb_: 3ukt B: [250216]
    automated match to d3uknb_
  3. Domain d3uktc_: 3ukt C: [250217]
    automated match to d3ukna_
  4. Domain d3uktd_: 3ukt D: [250218]
    automated match to d3ukna_
3. Domains for 3ukv:
  1. Domain d3ukva_: 3ukv A: [250219]
    automated match to d3ukna_
  2. Domain d3ukvb_: 3ukv B: [250220]
    automated match to d3uknb_
  3. Domain d3ukvc_: 3ukv C: [250221]
    automated match to d3ukna_

More info for Protein automated matches from b.82.3.0: automated matches

Timeline for Protein automated matches from b.82.3.0: automated matches:

Protein automated matches from b.82.3.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from b.82.3.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.82.3.0: automated matches appears in SCOPe 2.07
Protein automated matches from b.82.3.0: automated matches appears in the current release, SCOPe 2.08