Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1807020Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 1808270Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families) (S)
  5. 1808496Family b.82.3.0: automated matches [227198] (1 protein)
    not a true family
  6. 1808497Protein automated matches [226927] (11 species)
    not a true protein

Species:

  1. 1808498African malaria mosquito (Anopheles gambiae) [TaxId:7165] [226702] (1 PDB entry)
  2. 1808500Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233085] (1 PDB entry)
  3. 1808503Carboxydothermus hydrogenoformans [TaxId:129958] [225203] (1 PDB entry)
  4. 1808508Corynebacterium glutamicum [TaxId:1718] [226339] (2 PDB entries)
    1. Domains for 3r6s:
      1. 1808509Domain d3r6sa1: 3r6s A:3-147 [215597]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      2. 1808510Domain d3r6sb1: 3r6s B:3-147 [215599]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      3. 1808511Domain d3r6sc1: 3r6s C:3-147 [215601]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      4. 1808512Domain d3r6sd1: 3r6s D:3-147 [215603]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      5. 1808513Domain d3r6se1: 3r6s E:3-147 [215605]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
      6. 1808514Domain d3r6sf1: 3r6s F:3-147 [215607]
        Other proteins in same PDB: d3r6sa2, d3r6sb2, d3r6sc2, d3r6sd2, d3r6se2, d3r6sf2
        automated match to d1g6na2
        complexed with cmp, hez
    2. Domains for 4byy:
      1. 1808515Domain d4byya1: 4byy A:1-147 [257728]
        Other proteins in same PDB: d4byya2, d4byyb2
        automated match to d3r6sa1
        complexed with gol, po4
      2. 1808516Domain d4byyb1: 4byy B:3-147 [257727]
        Other proteins in same PDB: d4byya2, d4byyb2
        automated match to d3r6sa1
        complexed with gol, po4
  5. 1808517Human (Homo sapiens) [TaxId:9606] [256346] (3 PDB entries)
    1. Domain for 4ku7:
    2. Domains for 4ku8:
      1. 1808519Domain d4ku8b_: 4ku8 B: [253446]
        automated match to d1u12b_
        complexed with gly
      2. 1808520Domain d4ku8c_: 4ku8 C: [253447]
        automated match to d1u12b_
        complexed with gly
    3. Domain for 4qxk:
  6. 1808522Mycobacterium tuberculosis [TaxId:1773] [231918] (4 PDB entries)
    1. Domains for 3d0s:
      1. 1808523Domain d3d0sa1: 3d0s A:1-144 [231920]
        Other proteins in same PDB: d3d0sa2, d3d0sb2
        automated match to d3r6sf1
        complexed with cl
      2. 1808524Domain d3d0sb1: 3d0s B:991-144 [231919]
        Other proteins in same PDB: d3d0sa2, d3d0sb2
        automated match to d3r6sf1
        complexed with cl
    2. Domains for 3i54:
      1. 1808525Domain d3i54a1: 3i54 A:-5-144 [232550]
        Other proteins in same PDB: d3i54b2, d3i54c2, d3i54d2
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
      2. 1808526Domain d3i54b1: 3i54 B:-6-144 [232548]
        Other proteins in same PDB: d3i54b2, d3i54c2, d3i54d2
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
      3. 1808527Domain d3i54c1: 3i54 C:18-144 [239347]
        Other proteins in same PDB: d3i54b2, d3i54c2, d3i54d2
        automated match to d3i54b1
        protein/DNA complex; complexed with cmp
      4. 1808528Domain d3i54d1: 3i54 D:-4-144 [239349]
        Other proteins in same PDB: d3i54b2, d3i54c2, d3i54d2
        automated match to d3i54b1
        protein/DNA complex; complexed with cmp
    3. Domains for 3i59:
      1. 1808529Domain d3i59a1: 3i59 A:0-144 [246714]
        Other proteins in same PDB: d3i59a2, d3i59b2
        automated match to d3i54b1
        protein/DNA complex; complexed with cl, n6r, n6s
      2. 1808530Domain d3i59b1: 3i59 B:-1-141 [246716]
        Other proteins in same PDB: d3i59a2, d3i59b2
        automated match to d3i54b1
        protein/DNA complex; complexed with cl, n6r, n6s
    4. Domains for 4a2u:
      1. 1808531Domain d4a2ua1: 4a2u A:1-144 [250900]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      2. 1808532Domain d4a2ub1: 4a2u B:1-144 [250902]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      3. 1808533Domain d4a2uc1: 4a2u C:1-144 [250904]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      4. 1808534Domain d4a2ud1: 4a2u D:17-144 [250906]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      5. 1808535Domain d4a2ue1: 4a2u E:1-144 [250908]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      6. 1808536Domain d4a2uf1: 4a2u F:1-144 [250910]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      7. 1808537Domain d4a2ug1: 4a2u G:1-144 [250912]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
      8. 1808538Domain d4a2uh1: 4a2u H:-2-144 [250914]
        Other proteins in same PDB: d4a2ua2, d4a2ub2, d4a2uc2, d4a2ud2, d4a2ue2, d4a2uf2, d4a2ug2, d4a2uh2
        automated match to d3d0sa1
        complexed with cmp
  7. 1808539Mycobacterium tuberculosis [TaxId:83332] [232366] (2 PDB entries)
    1. Domains for 3h3u:
      1. 1808540Domain d3h3ua1: 3h3u A:2-144 [232368]
        Other proteins in same PDB: d3h3ua2, d3h3ub2
        automated match to d3r6sf1
        complexed with cmp, so4
      2. 1808541Domain d3h3ub1: 3h3u B:1-144 [232367]
        Other proteins in same PDB: d3h3ua2, d3h3ub2
        automated match to d3r6sf1
        complexed with cmp, so4
    2. Domains for 3mzh:
      1. 1808542Domain d3mzha1: 3mzh A:0-144 [232961]
        Other proteins in same PDB: d3mzha2, d3mzhb2
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
      2. 1808543Domain d3mzhb1: 3mzh B:0-144 [232960]
        Other proteins in same PDB: d3mzha2, d3mzhb2
        automated match to d3r6sf1
        protein/DNA complex; complexed with cmp
  8. 1808544Pseudomonas aeruginosa [TaxId:287] [267817] (1 PDB entry)
  9. 1808548Streptomyces coelicolor [TaxId:100226] [255548] (1 PDB entry)
  10. 1808553Xanthomonas campestris [TaxId:340] [225796] (1 PDB entry)
  11. 1808558Zebrafish (Danio rerio) [TaxId:7955] [233796] (3 PDB entries)
    1. Domains for 3ukn:
      1. 1808559Domain d3ukna_: 3ukn A: [233797]
        automated match to d4l11a_
      2. 1808560Domain d3uknb_: 3ukn B: [233798]
        automated match to d4l11a_
      3. 1808561Domain d3uknc_: 3ukn C: [233799]
        automated match to d4l11a_
    2. Domains for 3ukt:
      1. 1808562Domain d3ukta_: 3ukt A: [250215]
        automated match to d3ukna_
      2. 1808563Domain d3uktb_: 3ukt B: [250216]
        automated match to d3uknb_
      3. 1808564Domain d3uktc_: 3ukt C: [250217]
        automated match to d3ukna_
      4. 1808565Domain d3uktd_: 3ukt D: [250218]
        automated match to d3ukna_
    3. Domains for 3ukv:
      1. 1808566Domain d3ukva_: 3ukv A: [250219]
        automated match to d3ukna_
      2. 1808567Domain d3ukvb_: 3ukv B: [250220]
        automated match to d3uknb_
      3. 1808568Domain d3ukvc_: 3ukv C: [250221]
        automated match to d3ukna_

More info for Protein automated matches from b.82.3.0: automated matches

Timeline for Protein automated matches from b.82.3.0: automated matches: