SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2170593Fold d.52: Alpha-lytic protease prodomain-like [54805] (10 superfamilies)
    core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta
  4. 2170612Superfamily d.52.2: GMP synthetase C-terminal dimerisation domain [54810] (2 families) (S)
    automatically mapped to Pfam PF00958
  5. 2170629Family d.52.2.0: automated matches [227193] (1 protein)
    not a true family
  6. 2170630Protein automated matches [226919] (4 species)
    not a true protein

Species:

  1. 2170631Coxiella burnetii [TaxId:777] [256104] (1 PDB entry)
  2. 2170636Pyrococcus horikoshii OT3 [TaxId:70601] [311264] (2 PDB entries)
    1. Domains for 2dpl:
      1. 2170637Domain d2dpla2: 2dpl A:190-308 [204020]
        Other proteins in same PDB: d2dpla1, d2dplb1
        automated match to d1gpma3
      2. 2170638Domain d2dplb2: 2dpl B:190-308 [204022]
        Other proteins in same PDB: d2dpla1, d2dplb1
        automated match to d1gpma3
    2. Domain for 2z0c:
  3. 2170640Pyrococcus horikoshii [TaxId:53953] [225701] (2 PDB entries)
    1. Domain for 2z0c:
    2. Domains for 3a4i:
      1. 2170642Domain d3a4ia2: 3a4i A:190-308 [208102]
        Other proteins in same PDB: d3a4ia1, d3a4ib1
        automated match to d1gpma3
      2. 2170643Domain d3a4ib2: 3a4i B:190-308 [208104]
        Other proteins in same PDB: d3a4ia1, d3a4ib1
        automated match to d1gpma3
  4. 2283234Neisseria gonorrhoeae [TaxId:485] [326535] (1 PDB entry)

More info for Protein automated matches from d.52.2.0: automated matches

Timeline for Protein automated matches from d.52.2.0: automated matches: