Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2193533Fold d.131: DNA clamp [55978] (1 superfamily)
    contains two helices and two beta sheets
    duplication: fold has internal pseudo two-fold symmetry
  4. 2193534Superfamily d.131.1: DNA clamp [55979] (3 families) (S)
  5. 2193902Family d.131.1.0: automated matches [227185] (1 protein)
    not a true family
  6. 2193903Protein automated matches [226907] (17 species)
    not a true protein

Species:

  1. 2193904Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [233237] (1 PDB entry)
  2. 2193906Entamoeba (Entamoeba histolytica) [TaxId:5759] [233155] (1 PDB entry)
  3. 2193909Escherichia coli K-12 [TaxId:83333] [256026] (1 PDB entry)
  4. 2193916Escherichia coli [TaxId:562] [255692] (2 PDB entries)
    1. Domains for 2xur:
      1. 2193923Domain d2xura1: 2xur A:1-122 [244585]
        automated match to d4k3la1
        mutant
      2. 2193924Domain d2xura2: 2xur A:123-244 [244586]
        automated match to d4k3la2
        mutant
      3. 2193925Domain d2xura3: 2xur A:245-366 [244587]
        automated match to d4k3lb3
        mutant
      4. 2193926Domain d2xurb1: 2xur B:1-122 [244588]
        automated match to d4k3la1
        mutant
      5. 2193927Domain d2xurb2: 2xur B:123-244 [244589]
        automated match to d4k3la2
        mutant
      6. 2193928Domain d2xurb3: 2xur B:245-364 [244590]
        automated match to d4k3lb3
        mutant
    2. Domains for 3f1v:
      1. 2193917Domain d3f1va1: 3f1v A:1-122 [246018]
        automated match to d4k3la1
        complexed with ca, cl; mutant
      2. 2193918Domain d3f1va2: 3f1v A:123-244 [246019]
        automated match to d4k3la2
        complexed with ca, cl; mutant
      3. 2193919Domain d3f1va3: 3f1v A:245-366 [246020]
        automated match to d4k3lb3
        complexed with ca, cl; mutant
      4. 2193920Domain d3f1vb1: 3f1v B:1-122 [246021]
        automated match to d4k3la1
        complexed with ca, cl; mutant
      5. 2193921Domain d3f1vb2: 3f1v B:123-244 [246022]
        automated match to d4k3la2
        complexed with ca, cl; mutant
      6. 2193922Domain d3f1vb3: 3f1v B:245-366 [246023]
        automated match to d4k3lb3
        complexed with ca, cl; mutant
  5. 2193929Fruit fly (Drosophila melanogaster) [TaxId:7227] [234655] (1 PDB entry)
  6. Human (Homo sapiens) [TaxId:9606] [254935] (3 PDB entries)
    1. Domains for 1w60:
      1. 2193933Domain d1w60a1: 1w60 A:1-126 [120648]
        automated match to d1plqa1
      2. 2193934Domain d1w60a2: 1w60 A:127-255 [120649]
        automated match to d1plqa2
      3. 2193935Domain d1w60b1: 1w60 B:1-126 [120650]
        automated match to d1plqa1
      4. 2193936Domain d1w60b2: 1w60 B:127-255 [120651]
        automated match to d1plqa2
    2. Domains for 5e0t:
      1. 2272763Domain d5e0ta1: 5e0t A:1-126 [316064]
        automated match to d1plqa1
        mutant
      2. 2272764Domain d5e0ta2: 5e0t A:127-255 [316065]
        automated match to d1plqa2
        mutant
      3. 2272765Domain d5e0tc1: 5e0t C:1-126 [316066]
        automated match to d1plqa1
        mutant
      4. 2272766Domain d5e0tc2: 5e0t C:127-256 [316067]
        automated match to d1plqa2
        mutant
      5. 2272768Domain d5e0tb1: 5e0t B:1-126 [316069]
        automated match to d1plqa1
        mutant
      6. 2272769Domain d5e0tb2: 5e0t B:127-259 [316070]
        automated match to d1plqa2
        mutant
    3. Domains for 5mom:
      1. 2285685Domain d5momb1: 5mom B:1-126 [328986]
        automated match to d1plqa1
        mutant
      2. 2285686Domain d5momb2: 5mom B:127-256 [328987]
        automated match to d1plqa2
        mutant
      3. 2285759Domain d5momc1: 5mom C:1-126 [329060]
        automated match to d1plqa1
        mutant
      4. 2285760Domain d5momc2: 5mom C:127-255 [329061]
        automated match to d1plqa2
        mutant
      5. 2285766Domain d5moma1: 5mom A:1-126 [329067]
        automated match to d1plqa1
        mutant
      6. 2285767Domain d5moma2: 5mom A:127-258 [329068]
        automated match to d1plqa2
        mutant
  7. 2193937Pacific white shrimp (Litopenaeus vannamei) [TaxId:6689] [256684] (1 PDB entry)
  8. 2193944Pseudomonas aeruginosa [TaxId:983919] [259535] (1 PDB entry)
  9. 2193951Sulfolobus solfataricus [TaxId:2287] [225132] (4 PDB entries)
    1. Domains for 2hii:
      1. 2193958Domain d2hiib1: 2hii B:2-127 [204552]
        automated match to d1ud9a1
      2. 2193959Domain d2hiib2: 2hii B:128-244 [204553]
        automated match to d1ud9a2
      3. 2193960Domain d2hiic1: 2hii C:1-126 [204554]
        automated match to d1ud9a1
      4. 2193961Domain d2hiic2: 2hii C:127-243 [204555]
        automated match to d1ud9a2
      5. 2193962Domain d2hiiy1: 2hii Y:2-127 [204556]
        automated match to d1ud9a1
      6. 2193963Domain d2hiiy2: 2hii Y:128-244 [204557]
        automated match to d1ud9a2
      7. 2193964Domain d2hiiz1: 2hii Z:1-126 [204558]
        automated match to d1ud9a1
      8. 2193965Domain d2hiiz2: 2hii Z:127-243 [204559]
        automated match to d1ud9a2
    2. Domains for 2ix2:
      1. 2193954Domain d2ix2b1: 2ix2 B:1-126 [204888]
        automated match to d1ud9a1
      2. 2193955Domain d2ix2b2: 2ix2 B:127-245 [204889]
        automated match to d1ud9a2
      3. 2193956Domain d2ix2c1: 2ix2 C:10-141 [204890]
        automated match to d1ud9a1
      4. 2193957Domain d2ix2c2: 2ix2 C:142-259 [204891]
        automated match to d1ud9a2
    3. Domains for 2izo:
      1. 2193966Domain d2izob1: 2izo B:1-127 [204912]
        automated match to d1ud9a1
        protein/DNA complex; complexed with mg, zn
      2. 2193967Domain d2izob2: 2izo B:128-245 [204913]
        automated match to d1ud9a2
        protein/DNA complex; complexed with mg, zn
    4. Domains for 3fds:
      1. 2193952Domain d3fdsd1: 3fds D:1-127 [209862]
        Other proteins in same PDB: d3fdsa1, d3fdsa2
        automated match to d1ud9a1
        protein/DNA complex; complexed with 1pe, edo, gol, peg, pge
      2. 2193953Domain d3fdsd2: 3fds D:128-245 [209863]
        Other proteins in same PDB: d3fdsa1, d3fdsa2
        automated match to d1ud9a2
        protein/DNA complex; complexed with 1pe, edo, gol, peg, pge
  10. 2193968Sulfolobus solfataricus [TaxId:273057] [225354] (3 PDB entries)
    1. Domains for 2ijx:
      1. 2193969Domain d2ijxa1: 2ijx A:1-126 [204796]
        automated match to d1ud9a1
        complexed with edo
      2. 2193970Domain d2ijxa2: 2ijx A:127-244 [204797]
        automated match to d1ud9a2
        complexed with edo
      3. 2193971Domain d2ijxb1: 2ijx B:1-126 [204798]
        automated match to d1ud9a1
        complexed with edo
      4. 2193972Domain d2ijxb2: 2ijx B:127-244 [204799]
        automated match to d1ud9a2
        complexed with edo
      5. 2193973Domain d2ijxc1: 2ijx C:1-126 [204800]
        automated match to d1ud9a1
        complexed with edo
      6. 2193974Domain d2ijxc2: 2ijx C:127-244 [204801]
        automated match to d1ud9a2
        complexed with edo
      7. 2193975Domain d2ijxd1: 2ijx D:1-126 [204802]
        automated match to d1ud9a1
        complexed with edo
      8. 2193976Domain d2ijxd2: 2ijx D:127-244 [204803]
        automated match to d1ud9a2
        complexed with edo
    2. Domains for 2io4:
      1. 2193989Domain d2io4b1: 2io4 B:1-127 [204830]
        automated match to d1ud9a1
        complexed with ca, mpd
      2. 2193990Domain d2io4b2: 2io4 B:128-246 [204831]
        automated match to d1ud9a2
        complexed with ca, mpd
      3. 2193991Domain d2io4d1: 2io4 D:1-127 [204832]
        automated match to d1ud9a1
        complexed with ca, mpd
      4. 2193992Domain d2io4d2: 2io4 D:128-245 [204833]
        automated match to d1ud9a2
        complexed with ca, mpd
    3. Domains for 2nti:
      1. 2193977Domain d2ntib1: 2nti B:1-127 [205162]
        automated match to d1ud9a1
        complexed with 7pg, br, k
      2. 2193978Domain d2ntib2: 2nti B:128-245 [205163]
        automated match to d1ud9a2
        complexed with 7pg, br, k
      3. 2193979Domain d2ntic1: 2nti C:1-126 [205164]
        automated match to d1ud9a1
        complexed with 7pg, br, k
      4. 2193980Domain d2ntic2: 2nti C:127-244 [205165]
        automated match to d1ud9a2
        complexed with 7pg, br, k
      5. 2193981Domain d2ntie1: 2nti E:1-127 [205166]
        automated match to d1ud9a1
        complexed with 7pg, br, k
      6. 2193982Domain d2ntie2: 2nti E:128-246 [205167]
        automated match to d1ud9a2
        complexed with 7pg, br, k
      7. 2193983Domain d2ntif1: 2nti F:1-126 [205168]
        automated match to d1ud9a1
        complexed with 7pg, br, k
      8. 2193984Domain d2ntif2: 2nti F:127-244 [205169]
        automated match to d1ud9a2
        complexed with 7pg, br, k
      9. 2193985Domain d2ntih1: 2nti H:1-127 [205170]
        automated match to d1ud9a1
        complexed with 7pg, br, k
      10. 2193986Domain d2ntih2: 2nti H:128-246 [205171]
        automated match to d1ud9a2
        complexed with 7pg, br, k
      11. 2193987Domain d2ntii1: 2nti I:1-126 [205172]
        automated match to d1ud9a1
        complexed with 7pg, br, k
      12. 2193988Domain d2ntii2: 2nti I:127-244 [205173]
        automated match to d1ud9a2
        complexed with 7pg, br, k
  11. 2193993Sulfolobus tokodaii [TaxId:273063] [231791] (2 PDB entries)
    1. Domains for 3aix:
      1. 2193994Domain d3aixa1: 3aix A:1-126 [231792]
        automated match to d2hiiy1
        complexed with so4
      2. 2193995Domain d3aixa2: 3aix A:127-245 [231805]
        automated match to d2hiiy2
        complexed with so4
    2. Domains for 3aiz:
      1. 2193996Domain d3aizc1: 3aiz C:1-126 [231793]
        automated match to d2hiiy1
        complexed with so4
      2. 2193997Domain d3aizc2: 3aiz C:127-246 [231803]
        automated match to d2hiiy2
        complexed with so4
      3. 2193998Domain d3aizd1: 3aiz D:1-126 [231794]
        automated match to d2hiiy1
        complexed with so4
      4. 2193999Domain d3aizd2: 3aiz D:127-245 [231804]
        automated match to d2hiiy2
        complexed with so4
  12. 2194000Thermococcus kodakarensis [TaxId:311400] [226061] (2 PDB entries)
    1. Domains for 3lx1:
      1. 2194001Domain d3lx1a1: 3lx1 A:2-122 [265042]
        automated match to d1iz5a1
        complexed with so4
      2. 2194002Domain d3lx1a2: 3lx1 A:123-247 [265043]
        automated match to d1iz4a2
        complexed with so4
    2. Domains for 3lx2:
      1. 2194003Domain d3lx2a1: 3lx2 A:2-117 [213081]
        automated match to d1ge8a1
        complexed with so4
      2. 2194004Domain d3lx2a2: 3lx2 A:118-248 [213082]
        automated match to d1ge8a2
        complexed with so4
      3. 2194005Domain d3lx2b1: 3lx2 B:2-117 [213083]
        automated match to d1ge8a1
        complexed with so4
      4. 2194006Domain d3lx2b2: 3lx2 B:118-247 [213084]
        automated match to d1ge8a2
        complexed with so4
      5. 2194007Domain d3lx2c1: 3lx2 C:2-117 [213085]
        automated match to d1ge8a1
        complexed with so4
      6. 2194008Domain d3lx2c2: 3lx2 C:118-247 [213086]
        automated match to d1ge8a2
        complexed with so4
  13. Leishmania donovani [TaxId:5661] [313997] (1 PDB entry)
  14. 2275982Thermococcus gammatolerans [TaxId:593117] [319283] (1 PDB entry)
  15. 2286840Aspergillus fumigatus [TaxId:1437362] [330141] (1 PDB entry)
  16. 2293804Rickettsia conorii [TaxId:272944] [337105] (1 PDB entry)
  17. 2293814Caulobacter crescentus [TaxId:190650] [337115] (1 PDB entry)

More info for Protein automated matches from d.131.1.0: automated matches

Timeline for Protein automated matches from d.131.1.0: automated matches: