Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2217268Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2217269Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2217671Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2217672Protein automated matches [226904] (32 species)
    not a true protein

Species:

  1. 2217673Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)
    1. Domains for 5d8d:
      1. 2217674Domain d5d8da2: 5d8d A:99-304 [321247]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      2. 2217675Domain d5d8db2: 5d8d B:99-304 [321664]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      3. 2217676Domain d5d8dc2: 5d8d C:99-304 [321298]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      4. 2217677Domain d5d8dd2: 5d8d D:99-305 [321249]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      5. 2217678Domain d5d8de2: 5d8d E:99-307 [321677]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      6. 2217679Domain d5d8df2: 5d8d F:99-305 [321283]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
    2. Domain for 5dmx:
  2. 2217681Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226104] (1 PDB entry)
  3. 2217686Aquifex aeolicus [TaxId:63363] [255713] (2 PDB entries)
    1. Domains for 2yw2:
      1. 2217687Domain d2yw2a2: 2yw2 A:102-322 [244837]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
      2. 2217688Domain d2yw2b2: 2yw2 B:102-322 [244840]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
    2. Domains for 2yya:
      1. 2217689Domain d2yyaa2: 2yya A:102-322 [244883]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
      2. 2217690Domain d2yyab2: 2yya B:102-322 [244886]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
  4. 2217691Bacillus anthracis [TaxId:198094] [226099] (1 PDB entry)
  5. 2217694Burkholderia ambifaria [TaxId:398577] [226366] (1 PDB entry)
  6. 2217697Burkholderia pseudomallei [TaxId:320372] [226352] (1 PDB entry)
  7. 2217702Burkholderia xenovorans [TaxId:266265] [226416] (1 PDB entry)
  8. 2217707Campylobacter jejuni [TaxId:192222] [256007] (2 PDB entries)
    1. Domains for 3ouu:
      1. 2217710Domain d3ouua2: 3ouu A:117-329 [248341]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouua4, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
      2. 2217711Domain d3ouub2: 3ouu B:117-329 [248344]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouua4, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 2217708Domain d3ouza2: 3ouz A:117-329 [248347]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouza4, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 2217709Domain d3ouzb2: 3ouz B:117-329 [248350]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouza4, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  9. 2217712Coxiella burnetii [TaxId:227377] [226220] (1 PDB entry)
  10. 2217715Ehrlichia chaffeensis [TaxId:205920] [255935] (1 PDB entry)
  11. 2217717Enterococcus faecalis [TaxId:1351] [226474] (1 PDB entry)
  12. 2217720Flaveria pringlei [TaxId:4226] [332628] (1 PDB entry)
  13. 2217722Flaveria trinervia [TaxId:4227] [332552] (3 PDB entries)
    1. Domains for 5jvj:
      1. 2217728Domain d5jvja1: 5jvj A:1-380 [332823]
        Other proteins in same PDB: d5jvja2, d5jvja3, d5jvjb2, d5jvjb3
        automated match to d1vbga3
        complexed with mg, pep
      2. 2217729Domain d5jvjb1: 5jvj B:2-380 [332553]
        Other proteins in same PDB: d5jvja2, d5jvja3, d5jvjb2, d5jvjb3
        automated match to d1vbga3
        complexed with mg, pep
    2. Domains for 5jvl:
      1. 2217725Domain d5jvla1: 5jvl A:1-380 [332561]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
      2. 2217726Domain d5jvlc1: 5jvl C:1-380 [332696]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
      3. 2217727Domain d5jvld1: 5jvl D:1-380 [332595]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
    3. Domains for 5lu4:
      1. 2217723Domain d5lu4a1: 5lu4 A:1-380 [334488]
        Other proteins in same PDB: d5lu4a2, d5lu4a3, d5lu4b2, d5lu4b3
        automated match to d1vbga3
        complexed with adp, mg, pyr
      2. 2217724Domain d5lu4b1: 5lu4 B:1-380 [334479]
        Other proteins in same PDB: d5lu4a2, d5lu4a3, d5lu4b2, d5lu4b3
        automated match to d1vbga3
        complexed with adp, mg, pyr
  14. 2217730Geobacillus kaustophilus [TaxId:1462] [255710] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  15. 2217735Geobacillus thermodenitrificans [TaxId:33940] [255126] (1 PDB entry)
  16. 2217738Haemophilus influenzae [TaxId:71421] [268353] (8 PDB entries)
    1. Domain for 4mv1:
    2. Domain for 4mv3:
    3. Domain for 4mv4:
    4. Domain for 4mv6:
    5. Domain for 4mv7:
    6. Domain for 4mv8:
    7. Domain for 4mv9:
    8. Domain for 4rzq:
  17. 2217747Human (Homo sapiens) [TaxId:9606] [255566] (1 PDB entry)
  18. 2217750Mycobacterium tuberculosis [TaxId:1773] [225852] (1 PDB entry)
  19. 2217753Mycobacterium tuberculosis [TaxId:83332] [330748] (1 PDB entry)
  20. 2217755Neisseria gonorrhoeae [TaxId:521006] [333085] (1 PDB entry)
  21. 2217758Pseudomonas aeruginosa [TaxId:287] [255073] (2 PDB entries)
    1. Domains for 2c00:
      1. 2217760Domain d2c00a2: 2c00 A:115-330 [241398]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
      2. 2217761Domain d2c00b2: 2c00 B:115-330 [241401]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
    2. Domain for 2vqd:
  22. 2217762Salmonella enterica [TaxId:90371] [226057] (1 PDB entry)
  23. 2217767Salmonella typhimurium [TaxId:90371] [225724] (1 PDB entry)
  24. 2217772Staphylococcus aureus [TaxId:1280] [225146] (3 PDB entries)
    1. Domains for 2i80:
      1. 2217773Domain d2i80a2: 2i80 A:129-356 [204738]
        Other proteins in same PDB: d2i80a1, d2i80a3, d2i80b1, d2i80b3
        automated match to d1ehib2
        complexed with g1l
      2. 2217774Domain d2i80b2: 2i80 B:129-358 [204740]
        Other proteins in same PDB: d2i80a1, d2i80a3, d2i80b1, d2i80b3
        automated match to d1ehib2
        complexed with g1l
    2. Domains for 2vpq:
      1. 2217775Domain d2vpqa2: 2vpq A:115-329 [243923]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
      2. 2217776Domain d2vpqb2: 2vpq B:115-329 [243926]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
    3. Domains for 3n8d:
      1. 2217777Domain d3n8da2: 3n8d A:129-353 [213786]
        Other proteins in same PDB: d3n8da1, d3n8db1, d3n8db3
        automated match to d1ehib2
        complexed with anp, cl, so4
      2. 2217778Domain d3n8db2: 3n8d B:129-356 [213788]
        Other proteins in same PDB: d3n8da1, d3n8db1, d3n8db3
        automated match to d1ehib2
        complexed with anp, cl, so4
  25. 2217779Staphylococcus aureus [TaxId:93062] [225144] (2 PDB entries)
    1. Domains for 2i87:
      1. 2217780Domain d2i87a2: 2i87 A:129-356 [204747]
        Other proteins in same PDB: d2i87a1, d2i87a3, d2i87b1, d2i87b3
        automated match to d1ehib2
        complexed with so4
      2. 2217781Domain d2i87b2: 2i87 B:129-358 [204749]
        Other proteins in same PDB: d2i87a1, d2i87a3, d2i87b1, d2i87b3
        automated match to d1ehib2
        complexed with so4
    2. Domains for 2i8c:
      1. 2217782Domain d2i8ca2: 2i8c A:129-356 [204751]
        Other proteins in same PDB: d2i8ca1, d2i8ca3, d2i8cb1, d2i8cb3
        automated match to d1ehib2
        complexed with adp, mg, so4
      2. 2217783Domain d2i8cb2: 2i8c B:129-358 [204753]
        Other proteins in same PDB: d2i8ca1, d2i8ca3, d2i8cb1, d2i8cb3
        automated match to d1ehib2
        complexed with adp, mg, so4
  26. 2217784Streptococcus mutans [TaxId:1309] [232666] (1 PDB entry)
  27. 2217787Thermus caldophilus [TaxId:272] [225125] (1 PDB entry)
  28. 2217789Thermus thermophilus HB8 [TaxId:300852] [225373] (6 PDB entries)
    1. Domains for 2yzg:
      1. 2217803Domain d2yzga2: 2yzg A:115-319 [207744]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      2. 2217804Domain d2yzgb2: 2yzg B:115-319 [207746]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      3. 2217805Domain d2yzgc2: 2yzg C:115-319 [207748]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
    2. Domains for 2yzm:
      1. 2217798Domain d2yzma2: 2yzm A:115-319 [207750]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      2. 2217799Domain d2yzmb2: 2yzm B:115-319 [207752]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      3. 2217800Domain d2yzmc2: 2yzm C:115-319 [207754]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
    3. Domains for 2yzn:
      1. 2217806Domain d2yzna2: 2yzn A:115-319 [207756]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      2. 2217807Domain d2yznb2: 2yzn B:115-319 [207758]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      3. 2217808Domain d2yznc2: 2yzn C:115-319 [207760]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
    4. Domains for 2zdg:
      1. 2217794Domain d2zdga2: 2zdg A:115-319 [207823]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      2. 2217795Domain d2zdgb2: 2zdg B:115-319 [207825]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      3. 2217796Domain d2zdgc2: 2zdg C:115-319 [207827]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      4. 2217797Domain d2zdgd2: 2zdg D:115-319 [207829]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
    5. Domains for 2zdh:
      1. 2217790Domain d2zdha2: 2zdh A:115-319 [207831]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      2. 2217791Domain d2zdhb2: 2zdh B:115-319 [207833]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      3. 2217792Domain d2zdhc2: 2zdh C:115-319 [207835]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      4. 2217793Domain d2zdhd2: 2zdh D:115-319 [207837]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
    6. Domains for 2zdq:
      1. 2217801Domain d2zdqa2: 2zdq A:115-319 [207839]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
      2. 2217802Domain d2zdqb2: 2zdq B:115-319 [207841]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
  29. 2217809Xanthomonas oryzae [TaxId:291331] [226136] (1 PDB entry)
  30. 2217811Xanthomonas oryzae [TaxId:342109] [225705] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  31. 2217816Yersinia pestis [TaxId:214092] [226277] (1 PDB entry)
  32. 2217819Yersinia pestis [TaxId:632] [280584] (5 PDB entries)
    1. Domains for 4zqi:
      1. 2217824Domain d4zqia2: 4zqi A:97-306 [280592]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      2. 2217825Domain d4zqib2: 4zqi B:97-306 [280590]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      3. 2217826Domain d4zqic2: 4zqi C:97-306 [280585]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      4. 2217827Domain d4zqid2: 4zqi D:97-306 [280587]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
    2. Domains for 5bpf:
      1. 2217828Domain d5bpfa2: 5bpf A:97-306 [312667]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      2. 2217829Domain d5bpfb2: 5bpf B:97-306 [312614]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      3. 2217830Domain d5bpfc2: 5bpf C:97-306 [312683]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      4. 2217831Domain d5bpfd2: 5bpf D:97-306 [312650]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
    3. Domains for 5bph:
      1. 2217820Domain d5bpha2: 5bph A:97-306 [312603]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      2. 2217821Domain d5bphb2: 5bph B:97-306 [312639]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      3. 2217822Domain d5bphc2: 5bph C:97-306 [312612]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      4. 2217823Domain d5bphd2: 5bph D:97-306 [312616]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
    4. Domains for 5c1o:
      1. 2217836Domain d5c1oa2: 5c1o A:97-306 [312700]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      2. 2217837Domain d5c1ob2: 5c1o B:97-306 [312663]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      3. 2217838Domain d5c1oc2: 5c1o C:97-306 [312696]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      4. 2217839Domain d5c1od2: 5c1o D:97-306 [312678]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
    5. Domains for 5c1p:
      1. 2217832Domain d5c1pa2: 5c1p A:97-306 [312702]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      2. 2217833Domain d5c1pb2: 5c1p B:97-306 [312692]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      3. 2217834Domain d5c1pc2: 5c1p C:97-306 [312750]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      4. 2217835Domain d5c1pd2: 5c1p D:97-306 [312706]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na

More info for Protein automated matches from d.142.1.0: automated matches

Timeline for Protein automated matches from d.142.1.0: automated matches: