Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1671104Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 1671105Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (10 families) (S)
  5. 1671442Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 1671443Protein automated matches [226904] (25 species)
    not a true protein

Species:

  1. 1671444Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226104] (1 PDB entry)
  2. 1671449Aquifex aeolicus [TaxId:63363] [255713] (2 PDB entries)
    1. Domains for 2yw2:
      1. 1671450Domain d2yw2a2: 2yw2 A:102-322 [244837]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
      2. 1671451Domain d2yw2b2: 2yw2 B:102-322 [244840]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
    2. Domains for 2yya:
      1. 1671452Domain d2yyaa2: 2yya A:102-322 [244883]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
      2. 1671453Domain d2yyab2: 2yya B:102-322 [244886]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
  3. 1671454Bacillus anthracis [TaxId:198094] [226099] (1 PDB entry)
  4. 1671457Burkholderia ambifaria [TaxId:398577] [226366] (1 PDB entry)
  5. 1671460Burkholderia pseudomallei [TaxId:320372] [226352] (1 PDB entry)
  6. 1671465Burkholderia xenovorans [TaxId:266265] [226416] (1 PDB entry)
  7. 1671470Campylobacter jejuni [TaxId:192222] [256007] (2 PDB entries)
    1. Domains for 3ouu:
      1. 1671473Domain d3ouua2: 3ouu A:117-329 [248341]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
      2. 1671474Domain d3ouub2: 3ouu B:117-329 [248344]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 1671471Domain d3ouza2: 3ouz A:117-329 [248347]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 1671472Domain d3ouzb2: 3ouz B:117-329 [248350]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  8. 1671475Coxiella burnetii [TaxId:227377] [226220] (1 PDB entry)
  9. 1671478Ehrlichia chaffeensis [TaxId:205920] [255935] (1 PDB entry)
  10. 1671480Enterococcus faecalis [TaxId:1351] [226474] (1 PDB entry)
  11. 1671483Geobacillus kaustophilus [TaxId:1462] [255710] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  12. 1671488Geobacillus thermodenitrificans [TaxId:33940] [255126] (1 PDB entry)
  13. 1671491Human (Homo sapiens) [TaxId:9606] [255566] (1 PDB entry)
  14. 1671494Mycobacterium tuberculosis [TaxId:1773] [225852] (1 PDB entry)
  15. 1671497Pseudomonas aeruginosa [TaxId:287] [255073] (2 PDB entries)
    1. Domains for 2c00:
      1. 1671499Domain d2c00a2: 2c00 A:115-330 [241398]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
      2. 1671500Domain d2c00b2: 2c00 B:115-330 [241401]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
    2. Domain for 2vqd:
  16. 1671501Salmonella enterica [TaxId:90371] [226057] (1 PDB entry)
  17. 1671506Salmonella typhimurium [TaxId:90371] [225724] (1 PDB entry)
  18. 1671511Staphylococcus aureus [TaxId:1280] [225146] (3 PDB entries)
    1. Domains for 2i80:
      1. 1671512Domain d2i80a2: 2i80 A:129-358 [204738]
        Other proteins in same PDB: d2i80a1, d2i80b1
        automated match to d1ehib2
        complexed with g1l
      2. 1671513Domain d2i80b2: 2i80 B:129-360 [204740]
        Other proteins in same PDB: d2i80a1, d2i80b1
        automated match to d1ehib2
        complexed with g1l
    2. Domains for 2vpq:
      1. 1671514Domain d2vpqa2: 2vpq A:115-329 [243923]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
      2. 1671515Domain d2vpqb2: 2vpq B:115-329 [243926]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
    3. Domains for 3n8d:
      1. 1671516Domain d3n8da2: 3n8d A:129-353 [213786]
        Other proteins in same PDB: d3n8da1, d3n8db1
        automated match to d1ehib2
        complexed with anp, cl, so4
      2. 1671517Domain d3n8db2: 3n8d B:129-358 [213788]
        Other proteins in same PDB: d3n8da1, d3n8db1
        automated match to d1ehib2
        complexed with anp, cl, so4
  19. 1671518Staphylococcus aureus [TaxId:93062] [225144] (2 PDB entries)
    1. Domains for 2i87:
      1. 1671519Domain d2i87a2: 2i87 A:129-358 [204747]
        Other proteins in same PDB: d2i87a1, d2i87b1
        automated match to d1ehib2
        complexed with so4
      2. 1671520Domain d2i87b2: 2i87 B:129-360 [204749]
        Other proteins in same PDB: d2i87a1, d2i87b1
        automated match to d1ehib2
        complexed with so4
    2. Domains for 2i8c:
      1. 1671521Domain d2i8ca2: 2i8c A:129-358 [204751]
        Other proteins in same PDB: d2i8ca1, d2i8cb1
        automated match to d1ehib2
        complexed with adp, mg, so4
      2. 1671522Domain d2i8cb2: 2i8c B:129-360 [204753]
        Other proteins in same PDB: d2i8ca1, d2i8cb1
        automated match to d1ehib2
        complexed with adp, mg, so4
  20. 1671523Streptococcus mutans [TaxId:1309] [232666] (1 PDB entry)
  21. 1671526Thermus caldophilus [TaxId:272] [225125] (1 PDB entry)
  22. 1671528Thermus thermophilus HB8 [TaxId:300852] [225373] (6 PDB entries)
    1. Domains for 2yzg:
      1. 1671542Domain d2yzga2: 2yzg A:115-319 [207744]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      2. 1671543Domain d2yzgb2: 2yzg B:115-319 [207746]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      3. 1671544Domain d2yzgc2: 2yzg C:115-319 [207748]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
    2. Domains for 2yzm:
      1. 1671537Domain d2yzma2: 2yzm A:115-319 [207750]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      2. 1671538Domain d2yzmb2: 2yzm B:115-319 [207752]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      3. 1671539Domain d2yzmc2: 2yzm C:115-319 [207754]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
    3. Domains for 2yzn:
      1. 1671545Domain d2yzna2: 2yzn A:115-319 [207756]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      2. 1671546Domain d2yznb2: 2yzn B:115-319 [207758]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      3. 1671547Domain d2yznc2: 2yzn C:115-319 [207760]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
    4. Domains for 2zdg:
      1. 1671533Domain d2zdga2: 2zdg A:115-319 [207823]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      2. 1671534Domain d2zdgb2: 2zdg B:115-319 [207825]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      3. 1671535Domain d2zdgc2: 2zdg C:115-319 [207827]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      4. 1671536Domain d2zdgd2: 2zdg D:115-319 [207829]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
    5. Domains for 2zdh:
      1. 1671529Domain d2zdha2: 2zdh A:115-319 [207831]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      2. 1671530Domain d2zdhb2: 2zdh B:115-319 [207833]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      3. 1671531Domain d2zdhc2: 2zdh C:115-319 [207835]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      4. 1671532Domain d2zdhd2: 2zdh D:115-319 [207837]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
    6. Domains for 2zdq:
      1. 1671540Domain d2zdqa2: 2zdq A:115-319 [207839]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
      2. 1671541Domain d2zdqb2: 2zdq B:115-319 [207841]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
  23. 1671548Xanthomonas oryzae [TaxId:291331] [226136] (1 PDB entry)
  24. 1671550Xanthomonas oryzae [TaxId:342109] [225705] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  25. 1671555Yersinia pestis [TaxId:214092] [226277] (1 PDB entry)

More info for Protein automated matches from d.142.1.0: automated matches

Timeline for Protein automated matches from d.142.1.0: automated matches: