Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1591384Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
    3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
    possible rudiment form of Rossmann-fold domain
  4. 1591385Superfamily c.30.1: PreATP-grasp domain [52440] (9 families) (S)
    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
  5. 1591668Family c.30.1.0: automated matches [227183] (1 protein)
    not a true family
  6. 1591669Protein automated matches [226903] (25 species)
    not a true protein

Species:

  1. 1591670Aquifex aeolicus [TaxId:63363] [255712] (2 PDB entries)
    1. Domains for 2yw2:
      1. 1591671Domain d2yw2a1: 2yw2 A:1-101 [244836]
        Other proteins in same PDB: d2yw2a2, d2yw2a3, d2yw2b2, d2yw2b3
        automated match to d1gsoa2
        complexed with atp, po4
      2. 1591672Domain d2yw2b1: 2yw2 B:1-101 [244839]
        Other proteins in same PDB: d2yw2a2, d2yw2a3, d2yw2b2, d2yw2b3
        automated match to d1gsoa2
        complexed with atp, po4
    2. Domains for 2yya:
      1. 1591673Domain d2yyaa1: 2yya A:1-101 [244882]
        Other proteins in same PDB: d2yyaa2, d2yyaa3, d2yyab2, d2yyab3
        automated match to d1gsoa2
      2. 1591674Domain d2yyab1: 2yya B:1-101 [244885]
        Other proteins in same PDB: d2yyaa2, d2yyaa3, d2yyab2, d2yyab3
        automated match to d1gsoa2
  2. 1591675Burkholderia ambifaria [TaxId:398577] [226365] (1 PDB entry)
  3. 1591678Burkholderia pseudomallei [TaxId:320372] [226351] (1 PDB entry)
  4. 1591683Burkholderia xenovorans [TaxId:266265] [226415] (1 PDB entry)
  5. 1591688Campylobacter jejuni [TaxId:192222] [256006] (2 PDB entries)
    1. Domains for 3ouu:
      1. 1591691Domain d3ouua1: 3ouu A:-2-116 [248340]
        Other proteins in same PDB: d3ouua2, d3ouua3, d3ouub2, d3ouub3
        automated match to d1ulza2
        complexed with anp, ca, cac, fmt, gol
      2. 1591692Domain d3ouub1: 3ouu B:1-116 [248343]
        Other proteins in same PDB: d3ouua2, d3ouua3, d3ouub2, d3ouub3
        automated match to d1ulza2
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 1591689Domain d3ouza1: 3ouz A:-1-116 [248346]
        Other proteins in same PDB: d3ouza2, d3ouza3, d3ouzb2, d3ouzb3
        automated match to d1ulza2
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 1591690Domain d3ouzb1: 3ouz B:1-116 [248349]
        Other proteins in same PDB: d3ouza2, d3ouza3, d3ouzb2, d3ouzb3
        automated match to d1ulza2
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  6. 1591693Coxiella burnetii [TaxId:227377] [226218] (1 PDB entry)
  7. 1591696Ehrlichia chaffeensis [TaxId:205920] [255934] (1 PDB entry)
  8. 1591698Enterococcus faecalis [TaxId:1351] [226473] (1 PDB entry)
  9. 1591701Escherichia coli K-12 [TaxId:83333] [255841] (2 PDB entries)
    1. Domains for 3g8c:
      1. 1591704Domain d3g8ca1: 3g8c A:1-114 [246260]
        Other proteins in same PDB: d3g8ca2, d3g8ca3, d3g8cb2, d3g8cb3
        automated match to d2w70a1
        complexed with adp, bct, btn, mg
      2. 1591705Domain d3g8cb1: 3g8c B:1-114 [246263]
        Other proteins in same PDB: d3g8ca2, d3g8ca3, d3g8cb2, d3g8cb3
        automated match to d2w70a1
        complexed with adp, bct, btn, mg
    2. Domains for 3g8d:
      1. 1591702Domain d3g8da1: 3g8d A:1-114 [246266]
        Other proteins in same PDB: d3g8da2, d3g8db2, d3g8db3
        automated match to d2w70a1
        complexed with adp, mg, so4; mutant
      2. 1591703Domain d3g8db1: 3g8d B:1-114 [246268]
        Other proteins in same PDB: d3g8da2, d3g8db2, d3g8db3
        automated match to d2w70a1
        complexed with adp, mg, so4; mutant
  10. 1591706Geobacillus kaustophilus [TaxId:1462] [255709] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  11. 1591711Geobacillus thermodenitrificans [TaxId:33940] [255125] (1 PDB entry)
  12. 1591714Human (Homo sapiens) [TaxId:9606] [225246] (2 PDB entries)
    1. Domains for 2p0a:
      1. 1591715Domain d2p0aa1: 2p0a A:90-192 [205401]
        Other proteins in same PDB: d2p0aa2, d2p0ab2
        automated match to d1i7na1
        complexed with anp, cl, edo, so4
      2. 1591716Domain d2p0ab1: 2p0a B:90-192 [205403]
        Other proteins in same PDB: d2p0aa2, d2p0ab2
        automated match to d1i7na1
        complexed with anp, cl, edo, so4
    2. Domains for 2qk4:
      1. 1591717Domain d2qk4a1: 2qk4 A:0-105 [243583]
        Other proteins in same PDB: d2qk4a2, d2qk4a3, d2qk4b2, d2qk4b3
        automated match to d1gsoa2
        complexed with atp, cl, gol, so4
      2. 1591718Domain d2qk4b1: 2qk4 B:0-105 [243586]
        Other proteins in same PDB: d2qk4a2, d2qk4a3, d2qk4b2, d2qk4b3
        automated match to d1gsoa2
        complexed with atp, cl, gol, so4
  13. 1591719Mycobacterium tuberculosis [TaxId:1773] [225851] (1 PDB entry)
  14. 1591722Pseudomonas aeruginosa [TaxId:287] [255072] (2 PDB entries)
    1. Domains for 2c00:
      1. 1591724Domain d2c00a1: 2c00 A:1-114 [241397]
        Other proteins in same PDB: d2c00a2, d2c00a3, d2c00b2, d2c00b3
        automated match to d2w70a1
        complexed with so4
      2. 1591725Domain d2c00b1: 2c00 B:1-114 [241400]
        Other proteins in same PDB: d2c00a2, d2c00a3, d2c00b2, d2c00b3
        automated match to d2w70a1
        complexed with so4
    2. Domain for 2vqd:
  15. 1591726Salmonella enterica [TaxId:90371] [226056] (1 PDB entry)
  16. 1591731Salmonella typhimurium [TaxId:90371] [225723] (1 PDB entry)
  17. 1591736Staphylococcus aureus [TaxId:1280] [225145] (3 PDB entries)
    1. Domains for 2i80:
      1. 1591737Domain d2i80a1: 2i80 A:3-128 [204737]
        Other proteins in same PDB: d2i80a2, d2i80b2
        automated match to d1ehib1
        complexed with g1l
      2. 1591738Domain d2i80b1: 2i80 B:3-128 [204739]
        Other proteins in same PDB: d2i80a2, d2i80b2
        automated match to d1ehib1
        complexed with g1l
    2. Domains for 2vpq:
      1. 1591739Domain d2vpqa1: 2vpq A:2-114 [243922]
        Other proteins in same PDB: d2vpqa2, d2vpqa3, d2vpqb2, d2vpqb3
        automated match to d1ulza2
        complexed with anp, cl, mg
      2. 1591740Domain d2vpqb1: 2vpq B:2-114 [243925]
        Other proteins in same PDB: d2vpqa2, d2vpqa3, d2vpqb2, d2vpqb3
        automated match to d1ulza2
        complexed with anp, cl, mg
    3. Domains for 3n8d:
      1. 1591741Domain d3n8da1: 3n8d A:2-128 [213785]
        Other proteins in same PDB: d3n8da2, d3n8db2
        automated match to d1ehib1
        complexed with anp, cl, so4
      2. 1591742Domain d3n8db1: 3n8d B:2-128 [213787]
        Other proteins in same PDB: d3n8da2, d3n8db2
        automated match to d1ehib1
        complexed with anp, cl, so4
  18. 1591743Staphylococcus aureus [TaxId:93062] [225143] (2 PDB entries)
    1. Domains for 2i87:
      1. 1591744Domain d2i87a1: 2i87 A:3-128 [204746]
        Other proteins in same PDB: d2i87a2, d2i87b2
        automated match to d1ehib1
        complexed with so4
      2. 1591745Domain d2i87b1: 2i87 B:3-128 [204748]
        Other proteins in same PDB: d2i87a2, d2i87b2
        automated match to d1ehib1
        complexed with so4
    2. Domains for 2i8c:
      1. 1591746Domain d2i8ca1: 2i8c A:3-128 [204750]
        Other proteins in same PDB: d2i8ca2, d2i8cb2
        automated match to d1ehib1
        complexed with adp, mg, so4
      2. 1591747Domain d2i8cb1: 2i8c B:3-128 [204752]
        Other proteins in same PDB: d2i8ca2, d2i8cb2
        automated match to d1ehib1
        complexed with adp, mg, so4
  19. 1591748Streptococcus mutans [TaxId:1309] [232664] (1 PDB entry)
  20. 1591751Thermus caldophilus [TaxId:272] [225124] (1 PDB entry)
  21. 1591753Thermus thermophilus HB8 [TaxId:300852] [225372] (3 PDB entries)
    1. Domains for 2yzg:
      1. 1591757Domain d2yzga1: 2yzg A:1-114 [207743]
        Other proteins in same PDB: d2yzga2, d2yzgb2, d2yzgc2
        automated match to d1e4ea1
      2. 1591758Domain d2yzgb1: 2yzg B:1-114 [207745]
        Other proteins in same PDB: d2yzga2, d2yzgb2, d2yzgc2
        automated match to d1e4ea1
      3. 1591759Domain d2yzgc1: 2yzg C:1-114 [207747]
        Other proteins in same PDB: d2yzga2, d2yzgb2, d2yzgc2
        automated match to d1e4ea1
    2. Domains for 2yzm:
      1. 1591754Domain d2yzma1: 2yzm A:1-114 [207749]
        Other proteins in same PDB: d2yzma2, d2yzmb2, d2yzmc2
        automated match to d1e4ea1
        complexed with dal
      2. 1591755Domain d2yzmb1: 2yzm B:1-114 [207751]
        Other proteins in same PDB: d2yzma2, d2yzmb2, d2yzmc2
        automated match to d1e4ea1
        complexed with dal
      3. 1591756Domain d2yzmc1: 2yzm C:1-114 [207753]
        Other proteins in same PDB: d2yzma2, d2yzmb2, d2yzmc2
        automated match to d1e4ea1
        complexed with dal
    3. Domains for 2yzn:
      1. 1591760Domain d2yzna1: 2yzn A:1-114 [207755]
        Other proteins in same PDB: d2yzna2, d2yznb2, d2yznc2
        automated match to d1e4ea1
        complexed with anp
      2. 1591761Domain d2yznb1: 2yzn B:1-114 [207757]
        Other proteins in same PDB: d2yzna2, d2yznb2, d2yznc2
        automated match to d1e4ea1
        complexed with anp
      3. 1591762Domain d2yznc1: 2yzn C:1-114 [207759]
        Other proteins in same PDB: d2yzna2, d2yznb2, d2yznc2
        automated match to d1e4ea1
        complexed with anp
  22. 1591763Thermus thermophilus [TaxId:274] [226603] (4 PDB entries)
    1. Domains for 2zdg:
      1. 1591770Domain d2zdga1: 2zdg A:1-114 [207822]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
      2. 1591771Domain d2zdgb1: 2zdg B:1-114 [207824]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
      3. 1591772Domain d2zdgc1: 2zdg C:1-114 [207826]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
      4. 1591773Domain d2zdgd1: 2zdg D:1-114 [207828]
        Other proteins in same PDB: d2zdga2, d2zdgb2, d2zdgc2, d2zdgd2
        automated match to d1e4ea1
        complexed with adp, mg
    2. Domains for 2zdh:
      1. 1591764Domain d2zdha1: 2zdh A:1-114 [207830]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
      2. 1591765Domain d2zdhb1: 2zdh B:1-114 [207832]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
      3. 1591766Domain d2zdhc1: 2zdh C:1-114 [207834]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
      4. 1591767Domain d2zdhd1: 2zdh D:1-114 [207836]
        Other proteins in same PDB: d2zdha2, d2zdhb2, d2zdhc2, d2zdhd2
        automated match to d1e4ea1
        complexed with adp, dal, mg
    3. Domains for 2zdq:
      1. 1591774Domain d2zdqa1: 2zdq A:1-114 [207838]
        Other proteins in same PDB: d2zdqa2, d2zdqb2
        automated match to d1e4ea1
        complexed with atp, dal
      2. 1591775Domain d2zdqb1: 2zdq B:1-114 [207840]
        Other proteins in same PDB: d2zdqa2, d2zdqb2
        automated match to d1e4ea1
        complexed with atp, dal
    4. Domains for 3vpd:
      1. 1591768Domain d3vpda1: 3vpd A:1-88 [217979]
        Other proteins in same PDB: d3vpda2, d3vpdb2
        automated match to d1uc8a1
        complexed with anp, bua, cit
      2. 1591769Domain d3vpdb1: 3vpd B:1-88 [217981]
        Other proteins in same PDB: d3vpda2, d3vpdb2
        automated match to d1uc8a1
        complexed with anp, bua, cit
  23. 1591776Xanthomonas oryzae [TaxId:291331] [226135] (1 PDB entry)
  24. 1591778Xanthomonas oryzae [TaxId:342109] [225704] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  25. 1591783Yersinia pestis [TaxId:214092] [226276] (2 PDB entries)
    1. Domain for 3mjf:
    2. Domains for 3v4z:
      1. 1591785Domain d3v4za1: 3v4z A:2-96 [217663]
        Other proteins in same PDB: d3v4za2, d3v4zb2
        automated match to d1iowa1
        complexed with peg, pge
      2. 1591786Domain d3v4zb1: 3v4z B:1-96 [217665]
        Other proteins in same PDB: d3v4za2, d3v4zb2
        automated match to d1iowa1
        complexed with peg, pge

More info for Protein automated matches from c.30.1.0: automated matches

Timeline for Protein automated matches from c.30.1.0: automated matches: