SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2186950Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 2186951Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. 2187333Family d.104.1.0: automated matches [227172] (1 protein)
    not a true family
  6. 2187334Protein automated matches [226887] (12 species)
    not a true protein

Species:

  1. 2187335Bacillus stearothermophilus [TaxId:1422] [225707] (2 PDB entries)
    1. Domains for 3e9h:
      1. 2187336Domain d3e9ha2: 3e9h A:146-492 [209426]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      2. 2187337Domain d3e9hb2: 3e9h B:146-492 [209428]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      3. 2187338Domain d3e9hc2: 3e9h C:146-492 [209430]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
      4. 2187339Domain d3e9hd2: 3e9h D:146-492 [209432]
        Other proteins in same PDB: d3e9ha1, d3e9hb1, d3e9hc1, d3e9hd1
        automated match to d1bbua2
        protein/RNA complex; complexed with kaa, mg
    2. Domains for 3e9i:
      1. 2187340Domain d3e9ia2: 3e9i A:146-492 [209434]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      2. 2187341Domain d3e9ib2: 3e9i B:146-492 [209436]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      3. 2187342Domain d3e9ic2: 3e9i C:146-492 [209438]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
      4. 2187343Domain d3e9id2: 3e9i D:146-492 [209440]
        Other proteins in same PDB: d3e9ia1, d3e9ib1, d3e9ic1, d3e9id1
        automated match to d1bbua2
        protein/RNA complex; complexed with 1pe, mg, xah
  2. 2187344Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267892] (3 PDB entries)
    1. Domain for 3ugq:
    2. Domain for 3uh0:
    3. Domains for 4eo4:
      1. 2187347Domain d4eo4a1: 4eo4 A:36-340 [266223]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      2. 2187348Domain d4eo4b1: 4eo4 B:38-340 [266225]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      3. 2187349Domain d4eo4c1: 4eo4 C:36-340 [266227]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
      4. 2187350Domain d4eo4d1: 4eo4 D:36-340 [266229]
        Other proteins in same PDB: d4eo4a2, d4eo4b2, d4eo4c2, d4eo4d2
        automated match to d4hwta1
        protein/RNA complex; complexed with ssa, zn
  3. 2187351Escherichia coli [TaxId:562] [256019] (1 PDB entry)
  4. 2187354Human (Homo sapiens) [TaxId:9606] [225403] (8 PDB entries)
    1. Domains for 3bju:
      1. 2187357Domain d3bjua2: 3bju A:222-576 [208648]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      2. 2187358Domain d3bjub2: 3bju B:223-574 [208650]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      3. 2187359Domain d3bjuc2: 3bju C:222-575 [208652]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
      4. 2187360Domain d3bjud2: 3bju D:222-575 [208654]
        Other proteins in same PDB: d3bjua1, d3bjub1, d3bjuc1, d3bjud1
        automated match to d1bbua2
        complexed with atp, ca, lys
    2. Domains for 4dpg:
      1. 2187365Domain d4dpga2: 4dpg A:222-575 [219906]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      2. 2187366Domain d4dpgb2: 4dpg B:222-576 [219908]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      3. 2187367Domain d4dpgc2: 4dpg C:222-575 [219910]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      4. 2187368Domain d4dpgd2: 4dpg D:222-575 [219912]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      5. 2187369Domain d4dpge2: 4dpg E:222-575 [219914]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      6. 2187370Domain d4dpgf2: 4dpg F:222-575 [219916]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      7. 2187371Domain d4dpgg2: 4dpg G:222-575 [219918]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
      8. 2187372Domain d4dpgh2: 4dpg H:222-575 [219920]
        Other proteins in same PDB: d4dpga1, d4dpgb1, d4dpgc1, d4dpgd1, d4dpge1, d4dpgf1, d4dpgg1, d4dpgh1
        automated match to d1bbua2
        protein/RNA complex; complexed with ala, apc, lys, mg
    3. Domains for 4hwt:
      1. 2187361Domain d4hwta1: 4hwt A:354-644 [227928]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
      2. 2187362Domain d4hwtb1: 4hwt B:354-644 [227933]
        Other proteins in same PDB: d4hwta2, d4hwtb2
        automated match to d1qf6a4
        protein/RNA complex; complexed with 1b2, zn
    4. Domains for 4j15:
      1. 2187355Domain d4j15a2: 4j15 A:153-495 [223510]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
      2. 2187356Domain d4j15b2: 4j15 B:153-495 [223512]
        Other proteins in same PDB: d4j15a1, d4j15b1
        automated match to d1eova2
        protein/RNA complex; complexed with gol
    5. Domains for 4p3n:
      1. 2187373Domain d4p3na1: 4p3n A:322-611 [269745]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      2. 2187374Domain d4p3nb1: 4p3n B:322-611 [269739]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      3. 2187375Domain d4p3nc1: 4p3n C:322-611 [269741]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
      4. 2187376Domain d4p3nd1: 4p3n D:322-611 [269743]
        Other proteins in same PDB: d4p3na2, d4p3nb2, d4p3nc2, d4p3nd2
        automated match to d4hwra1
        protein/RNA complex; complexed with 2cr, zn
    6. Domains for 4ttv:
      1. 2187377Domain d4ttva1: 4ttv A:322-611 [277576]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      2. 2187378Domain d4ttvb1: 4ttv B:322-611 [277574]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      3. 2187379Domain d4ttvc1: 4ttv C:322-611 [277579]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
      4. 2187380Domain d4ttvd1: 4ttv D:322-611 [277581]
        Other proteins in same PDB: d4ttva2, d4ttva3, d4ttvb2, d4ttvb3, d4ttvc2, d4ttvc3, d4ttvd2, d4ttvd3
        automated match to d4hwra1
        protein/RNA complex; complexed with bc9, zn
    7. Domains for 4ycu:
      1. 2187363Domain d4ycua2: 4ycu A:222-576 [273829]
        Other proteins in same PDB: d4ycua1, d4ycub1
        automated match to d3bjua2
        protein/RNA complex; complexed with gol, krs, lys
      2. 2187364Domain d4ycub2: 4ycu B:222-575 [273831]
        Other proteins in same PDB: d4ycua1, d4ycub1
        automated match to d3bjua2
        protein/RNA complex; complexed with gol, krs, lys
    8. Domains for 4ycw:
      1. 2187381Domain d4ycwa2: 4ycw A:222-575 [273823]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      2. 2187382Domain d4ycwb2: 4ycw B:222-575 [273825]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      3. 2187383Domain d4ycwe2: 4ycw E:222-575 [273827]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
      4. 2187384Domain d4ycwf2: 4ycw F:222-575 [273821]
        Other proteins in same PDB: d4ycwa1, d4ycwb1, d4ycwe1, d4ycwf1
        automated match to d3bjua2
        protein/RNA complex; complexed with krs, lys; mutant
  5. 2187385Plasmodium falciparum [TaxId:36329] [234567] (2 PDB entries)
    1. Domains for 4h02:
      1. 2187386Domain d4h02a2: 4h02 A:229-581 [234568]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      2. 2187387Domain d4h02b2: 4h02 B:229-581 [234569]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      3. 2187388Domain d4h02c2: 4h02 C:229-583 [234576]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      4. 2187389Domain d4h02d2: 4h02 D:229-581 [234577]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      5. 2187390Domain d4h02e2: 4h02 E:229-581 [234578]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      6. 2187391Domain d4h02f2: 4h02 F:229-581 [234580]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      7. 2187392Domain d4h02g2: 4h02 G:229-581 [234579]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
      8. 2187393Domain d4h02h2: 4h02 H:229-581 [234581]
        Other proteins in same PDB: d4h02a1, d4h02b1, d4h02c1, d4h02d1, d4h02e1, d4h02f1, d4h02g1, d4h02h1
        automated match to d4dpgb2
    2. Domains for 4pg3:
      1. 2187394Domain d4pg3a2: 4pg3 A:230-581 [258137]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      2. 2187395Domain d4pg3b2: 4pg3 B:229-581 [263477]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      3. 2187396Domain d4pg3c2: 4pg3 C:229-581 [263479]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
      4. 2187397Domain d4pg3d2: 4pg3 D:230-581 [258135]
        Other proteins in same PDB: d4pg3a1, d4pg3b1, d4pg3c1, d4pg3d1
        automated match to d3bjua2
        complexed with krs, lys
  6. 2187398Pyrococcus horikoshii [TaxId:53953] [230395] (3 PDB entries)
    1. Domain for 1x54:
    2. Domain for 1x55:
    3. Domain for 1x56:
  7. 2187402Staphylococcus haemolyticus [TaxId:1283] [225371] (2 PDB entries)
    1. Domain for 2rhq:
    2. Domains for 2rhs:
      1. 2187404Domain d2rhsa_: 2rhs A: [206134]
        Other proteins in same PDB: d2rhsc2
        automated match to d1b7ya_
        complexed with gax, so4, zn
      2. 2187405Domain d2rhsc1: 2rhs C:84-351 [206135]
        Other proteins in same PDB: d2rhsc2
        automated match to d1b7ya_
        complexed with gax, so4, zn
  8. 2187406Sulfolobus tokodaii [TaxId:273063] [230390] (1 PDB entry)
  9. 2187409Thermococcus kodakarensis [TaxId:311400] [226766] (3 PDB entries)
    1. Domains for 3nel:
      1. 2187412Domain d3nela2: 3nel A:103-316,A:317-438 [213896]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
      2. 2187413Domain d3nelb2: 3nel B:103-316,B:317-438 [213898]
        Other proteins in same PDB: d3nela1, d3nelb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with asp
    2. Domains for 3nem:
      1. 2187410Domain d3nema2: 3nem A:103-316,A:317-438 [213900]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
      2. 2187411Domain d3nemb2: 3nem B:103-316,B:317-438 [213902]
        Other proteins in same PDB: d3nema1, d3nemb1
        automated match to d1c0aa3
        protein/RNA complex; complexed with amo, atp, mg
    3. Domains for 3nen:
      1. 2187414Domain d3nena2: 3nen A:103-316,A:317-438 [213904]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3
      2. 2187415Domain d3nenb2: 3nen B:103-316,B:317-438 [213906]
        Other proteins in same PDB: d3nena1, d3nenb1
        automated match to d1c0aa3
  10. 2282895Cryptosporidium parvum [TaxId:353152] [326196] (2 PDB entries)
    1. Domains for 5eln:
      1. 2282896Domain d5elnc2: 5eln C:194-545 [326197]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
      2. 2282943Domain d5elna2: 5eln A:194-545 [326244]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
      3. 2283057Domain d5elnd2: 5eln D:195-545 [326358]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
      4. 2283072Domain d5elnb2: 5eln B:194-545 [326373]
        Other proteins in same PDB: d5elna1, d5elna3, d5elnb1, d5elnb3, d5elnc1, d5elnc3, d5elnd1, d5elnd3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, gol, lys
    2. Domains for 5elo:
      1. 2282902Domain d5eloa2: 5elo A:194-545 [326203]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
      2. 2282985Domain d5eloc2: 5elo C:194-544 [326286]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
      3. 2283048Domain d5elob2: 5elo B:194-545 [326349]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
      4. 2283062Domain d5elod2: 5elo D:194-545 [326363]
        Other proteins in same PDB: d5eloa1, d5eloa3, d5elob1, d5elob3, d5eloc1, d5eloc3, d5elod1, d5elod3
        automated match to d3bjuc2
        protein/RNA complex; complexed with edo, krs, lys, so4
  11. 2287678Enterococcus faecalis [TaxId:226185] [330979] (5 PDB entries)
    1. Domain for 5iby:
    2. Domains for 5ich:
      1. 2287679Domain d5icha1: 5ich A:1-247 [330980]
        Other proteins in same PDB: d5icha2, d5icha3, d5ichb2, d5ichb3
        automated match to d1vqza2
        complexed with sh5
      2. 2288103Domain d5ichb1: 5ich B:1-247 [331404]
        Other proteins in same PDB: d5icha2, d5icha3, d5ichb2, d5ichb3
        automated match to d1vqza2
        complexed with sh5
    3. Domains for 5icl:
      1. 2287752Domain d5icla1: 5icl A:1-247 [331053]
        Other proteins in same PDB: d5icla2, d5icla3, d5iclb2, d5iclb3
        automated match to d1vqza2
        complexed with laq
      2. 2287947Domain d5iclb1: 5icl B:1-247 [331248]
        Other proteins in same PDB: d5icla2, d5icla3, d5iclb2, d5iclb3
        automated match to d1vqza2
        complexed with laq
    4. Domain for 5idh:
    5. Domain for 5ij6:
  12. 2291093Mycobacterium ulcerans [TaxId:362242] [334394] (1 PDB entry)

More info for Protein automated matches from d.104.1.0: automated matches

Timeline for Protein automated matches from d.104.1.0: automated matches: