SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089241Superfamily c.1.17: Nicotinate/Quinolinate PRTase C-terminal domain-like [51690] (3 families) (S)
    incomplete beta/alpha barrel with parallel beta-sheet of 7 strands
  5. 2089313Family c.1.17.0: automated matches [227169] (1 protein)
    not a true family
  6. 2089314Protein automated matches [226879] (8 species)
    not a true protein

Species:

  1. 2089315Ehrlichia chaffeensis [TaxId:205920] [225806] (1 PDB entry)
  2. 2089320Francisella tularensis [TaxId:177416] [226222] (1 PDB entry)
  3. 2089323Helicobacter pylori [TaxId:210] [225051] (2 PDB entries)
    1. Domains for 2b7n:
      1. 2089324Domain d2b7na2: 2b7n A:103-273 [203562]
        Other proteins in same PDB: d2b7na1, d2b7nb1, d2b7nc1
        automated match to d1qapa1
        complexed with ntm, so4
      2. 2089325Domain d2b7nb2: 2b7n B:103-273 [203564]
        Other proteins in same PDB: d2b7na1, d2b7nb1, d2b7nc1
        automated match to d1qapa1
        complexed with ntm, so4
      3. 2089326Domain d2b7nc2: 2b7n C:103-273 [203566]
        Other proteins in same PDB: d2b7na1, d2b7nb1, d2b7nc1
        automated match to d1qapa1
        complexed with ntm, so4
    2. Domains for 2b7p:
      1. 2089327Domain d2b7pa2: 2b7p A:103-273 [203568]
        Other proteins in same PDB: d2b7pa1, d2b7pb1, d2b7pc1
        automated match to d1qapa1
        complexed with pht, so4
      2. 2089328Domain d2b7pb2: 2b7p B:103-273 [203570]
        Other proteins in same PDB: d2b7pa1, d2b7pb1, d2b7pc1
        automated match to d1qapa1
        complexed with pht, so4
      3. 2089329Domain d2b7pc2: 2b7p C:103-273 [203572]
        Other proteins in same PDB: d2b7pa1, d2b7pb1, d2b7pc1
        automated match to d1qapa1
        complexed with pht, so4
  4. 2089330Thermus thermophilus HB8 [TaxId:300852] [225063] (1 PDB entry)
  5. 2089334Vibrio cholerae [TaxId:243277] [226021] (2 PDB entries)
    1. Domains for 3paj:
      1. 2089337Domain d3paja2: 3paj A:129-296 [214737]
        Other proteins in same PDB: d3paja1, d3paja3, d3pajb1, d3pajb3
        automated match to d1qapa1
        complexed with mg
      2. 2089338Domain d3pajb2: 3paj B:129-294 [214739]
        Other proteins in same PDB: d3paja1, d3paja3, d3pajb1, d3pajb3
        automated match to d1qapa1
        complexed with mg
    2. Domains for 4hl7:
      1. 2089335Domain d4hl7a2: 4hl7 A:151-428 [262708]
        Other proteins in same PDB: d4hl7a1, d4hl7a3, d4hl7b1, d4hl7b3
        automated match to d4hl7b2
        complexed with so4
      2. 2089336Domain d4hl7b2: 4hl7 B:151-426 [252462]
        Other proteins in same PDB: d4hl7a1, d4hl7a3, d4hl7b1, d4hl7b3
        automated match to d3os4a2
        complexed with so4
  6. 2089339Yersinia pestis [TaxId:214092] [225973] (1 PDB entry)
  7. 2285557Streptococcus pyogenes [TaxId:1115816] [328858] (1 PDB entry)
  8. 2285562Streptococcus pyogenes [TaxId:471876] [328863] (1 PDB entry)

More info for Protein automated matches from c.1.17.0: automated matches

Timeline for Protein automated matches from c.1.17.0: automated matches: