SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
Superfamily d.41.2: Nicotinate/Quinolinate PRTase N-terminal domain-like [54675] (3 families)
Family d.41.2.0: automated matches [227168] (1 protein)
not a true family
Protein automated matches [226878] (8 species)
not a true protein

Species:

Ehrlichia chaffeensis [TaxId:205920] [225805] (1 PDB entry)
- Domains for 3l0g:
  1. Domain d3l0ga1: 3l0g A:3-107 [212624]
    Other proteins in same PDB: d3l0ga2, d3l0gb2, d3l0gc2, d3l0gd2
    automated match to d1qapa2
    complexed with edo, fmt
  2. Domain d3l0gb1: 3l0g B:3-107 [212626]
    Other proteins in same PDB: d3l0ga2, d3l0gb2, d3l0gc2, d3l0gd2
    automated match to d1qapa2
    complexed with edo, fmt
  3. Domain d3l0gc1: 3l0g C:1-107 [212628]
    Other proteins in same PDB: d3l0ga2, d3l0gb2, d3l0gc2, d3l0gd2
    automated match to d1qapa2
    complexed with edo, fmt
  4. Domain d3l0gd1: 3l0g D:2-107 [212630]
    Other proteins in same PDB: d3l0ga2, d3l0gb2, d3l0gc2, d3l0gd2
    automated match to d1qapa2
    complexed with edo, fmt
Francisella tularensis [TaxId:177416] [226221] (1 PDB entry)
- Domains for 3tqv:
  1. Domain d3tqva1: 3tqv A:7-119 [216998]
    Other proteins in same PDB: d3tqva2, d3tqvb2
    automated match to d1qapa2
    complexed with po4
  2. Domain d3tqvb1: 3tqv B:7-119 [217000]
    Other proteins in same PDB: d3tqva2, d3tqvb2
    automated match to d1qapa2
    complexed with po4
Helicobacter pylori [TaxId:210] [225050] (2 PDB entries)
1. Domains for 2b7n:
  1. Domain d2b7na1: 2b7n A:1-102 [203561]
    Other proteins in same PDB: d2b7na2, d2b7nb2, d2b7nc2
    automated match to d1qapa2
    complexed with ntm, so4
  2. Domain d2b7nb1: 2b7n B:1-102 [203563]
    Other proteins in same PDB: d2b7na2, d2b7nb2, d2b7nc2
    automated match to d1qapa2
    complexed with ntm, so4
  3. Domain d2b7nc1: 2b7n C:1-102 [203565]
    Other proteins in same PDB: d2b7na2, d2b7nb2, d2b7nc2
    automated match to d1qapa2
    complexed with ntm, so4
2. Domains for 2b7p:
  1. Domain d2b7pa1: 2b7p A:1-102 [203567]
    Other proteins in same PDB: d2b7pa2, d2b7pb2, d2b7pc2
    automated match to d1qapa2
    complexed with pht, so4
  2. Domain d2b7pb1: 2b7p B:1-102 [203569]
    Other proteins in same PDB: d2b7pa2, d2b7pb2, d2b7pc2
    automated match to d1qapa2
    complexed with pht, so4
  3. Domain d2b7pc1: 2b7p C:1-102 [203571]
    Other proteins in same PDB: d2b7pa2, d2b7pb2, d2b7pc2
    automated match to d1qapa2
    complexed with pht, so4
Streptococcus pyogenes [TaxId:1115816] [328856] (1 PDB entry)
- Domains for 5huo:
  1. Domain d5huoa1: 5huo A:6-116 [329018]
    Other proteins in same PDB: d5huoa2, d5huob2, d5huoc2, d5huoe2, d5huof2, d5huoh2
    automated match to d1x1oa1
    complexed with so4; mutant
  2. Domain d5huob1: 5huo B:6-116 [328872]
    Other proteins in same PDB: d5huoa2, d5huob2, d5huoc2, d5huoe2, d5huof2, d5huoh2
    automated match to d1x1oa1
    complexed with so4; mutant
  3. Domain d5huoc1: 5huo C:6-116 [329012]
    Other proteins in same PDB: d5huoa2, d5huob2, d5huoc2, d5huoe2, d5huof2, d5huoh2
    automated match to d1x1oa1
    complexed with so4; mutant
  4. Domain d5huoe1: 5huo E:6-116 [328975]
    Other proteins in same PDB: d5huoa2, d5huob2, d5huoc2, d5huoe2, d5huof2, d5huoh2
    automated match to d1x1oa1
    complexed with so4; mutant
  5. Domain d5huof1: 5huo F:5-116 [328939]
    Other proteins in same PDB: d5huoa2, d5huob2, d5huoc2, d5huoe2, d5huof2, d5huoh2
    automated match to d1x1oa1
    complexed with so4; mutant
  6. Domain d5huoh1: 5huo H:6-116 [328857]
    Other proteins in same PDB: d5huoa2, d5huob2, d5huoc2, d5huoe2, d5huof2, d5huoh2
    automated match to d1x1oa1
    complexed with so4; mutant
Streptococcus pyogenes [TaxId:471876] [328861] (1 PDB entry)
- Domains for 5hul:
  1. Domain d5hula1: 5hul A:5-116 [328862]
    Other proteins in same PDB: d5hula2, d5hulb2, d5hulc2, d5huld2
    automated match to d1x1oa1
    complexed with po4; mutant
  2. Domain d5hulb1: 5hul B:5-116 [328919]
    Other proteins in same PDB: d5hula2, d5hulb2, d5hulc2, d5huld2
    automated match to d1x1oa1
    complexed with po4; mutant
  3. Domain d5hulc1: 5hul C:6-116 [328909]
    Other proteins in same PDB: d5hula2, d5hulb2, d5hulc2, d5huld2
    automated match to d1x1oa1
    complexed with po4; mutant
  4. Domain d5huld1: 5hul D:5-116 [328870]
    Other proteins in same PDB: d5hula2, d5hulb2, d5hulc2, d5huld2
    automated match to d1x1oa1
    complexed with po4; mutant
Thermus thermophilus HB8 [TaxId:300852] [225062] (1 PDB entry)
- Domains for 1x1o:
  1. Domain d1x1oa1: 1x1o A:10-116 [203071]
    Other proteins in same PDB: d1x1oa2, d1x1ob2, d1x1oc2
    automated match to d1qapa2
  2. Domain d1x1ob1: 1x1o B:11-116 [203073]
    Other proteins in same PDB: d1x1oa2, d1x1ob2, d1x1oc2
    automated match to d1qapa2
  3. Domain d1x1oc1: 1x1o C:10-116 [203075]
    Other proteins in same PDB: d1x1oa2, d1x1ob2, d1x1oc2
    automated match to d1qapa2
Vibrio cholerae [TaxId:243277] [226020] (2 PDB entries)
1. Domains for 3paj:
  1. Domain d3paja1: 3paj A:1-128 [214736]
    Other proteins in same PDB: d3paja2, d3paja3, d3pajb2, d3pajb3
    automated match to d1qapa2
    complexed with mg
  2. Domain d3pajb1: 3paj B:1-128 [214738]
    Other proteins in same PDB: d3paja2, d3paja3, d3pajb2, d3pajb3
    automated match to d1qapa2
    complexed with mg
2. Domains for 4hl7:
  1. Domain d4hl7a1: 4hl7 A:4-150 [262707]
    Other proteins in same PDB: d4hl7a2, d4hl7a3, d4hl7b2, d4hl7b3
    automated match to d4hl7b1
    complexed with so4
  2. Domain d4hl7b1: 4hl7 B:4-150 [252461]
    Other proteins in same PDB: d4hl7a2, d4hl7a3, d4hl7b2, d4hl7b3
    automated match to d3os4a1
    complexed with so4
Yersinia pestis [TaxId:214092] [225972] (1 PDB entry)
- Domains for 3os4:
  1. Domain d3os4a1: 3os4 A:3-140 [214518]
    Other proteins in same PDB: d3os4a2, d3os4b2
    automated match to d1yira2
    complexed with acy, cl, fmt, gol, mg, peg
  2. Domain d3os4b1: 3os4 B:4-140 [214520]
    Other proteins in same PDB: d3os4a2, d3os4b2
    automated match to d1yira2
    complexed with acy, cl, fmt, gol, mg, peg

More info for Protein automated matches from d.41.2.0: automated matches

Timeline for Protein automated matches from d.41.2.0: automated matches:

Protein automated matches from d.41.2.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from d.41.2.0: automated matches appears in SCOPe 2.05
Protein automated matches from d.41.2.0: automated matches appears in SCOPe 2.07
Protein automated matches from d.41.2.0: automated matches appears in the current release, SCOPe 2.08