Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1359066Fold c.25: Ferredoxin reductase-like, C-terminal NADP-linked domain [52342] (1 superfamily)
    3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145
  4. 1359067Superfamily c.25.1: Ferredoxin reductase-like, C-terminal NADP-linked domain [52343] (6 families) (S)
    binds NADP differently than classical Rossmann-fold
    N-terminal FAD-linked domain contains (6,10) barrel
  5. 1359225Family c.25.1.0: automated matches [227163] (1 protein)
    not a true family
  6. 1359226Protein automated matches [226871] (12 species)
    not a true protein

Species:

  1. 1359227Anabaena sp. [TaxId:1168] [226793] (1 PDB entry)
  2. 1359229Bacillus megaterium [TaxId:1404] [226323] (2 PDB entries)
    1. Domains for 4dqk:
      1. 1359232Domain d4dqka2: 4dqk A:888-1048 [219937]
        Other proteins in same PDB: d4dqka1, d4dqkb1
        automated match to d1tlla3
        complexed with fad, pg4, so4
      2. 1359233Domain d4dqkb2: 4dqk B:888-1048 [219939]
        Other proteins in same PDB: d4dqka1, d4dqkb1
        automated match to d1tlla3
        complexed with fad, pg4, so4
    2. Domains for 4dql:
      1. 1359230Domain d4dqla2: 4dql A:888-1049 [219941]
        Other proteins in same PDB: d4dqla1, d4dqlb1
        automated match to d1tlla3
        complexed with 1pe, fad, nap, pg4, so4
      2. 1359231Domain d4dqlb2: 4dql B:888-1049 [219943]
        Other proteins in same PDB: d4dqla1, d4dqlb1
        automated match to d1tlla3
        complexed with 1pe, fad, nap, pg4, so4
  3. 1359234Burkholderia thailandensis [TaxId:271848] [226397] (2 PDB entries)
    1. Domains for 4f7d:
      1. 1359237Domain d4f7da2: 4f7d A:116-270 [221057]
        Other proteins in same PDB: d4f7da1, d4f7db1
        automated match to d1a8pa2
      2. 1359238Domain d4f7db2: 4f7d B:116-271 [221059]
        Other proteins in same PDB: d4f7da1, d4f7db1
        automated match to d1a8pa2
    2. Domains for 4fk8:
      1. 1359235Domain d4fk8a2: 4fk8 A:116-271 [221245]
        Other proteins in same PDB: d4fk8a1, d4fk8b1
        automated match to d1a8pa2
        complexed with fad
      2. 1359236Domain d4fk8b2: 4fk8 B:116-271 [221247]
        Other proteins in same PDB: d4fk8a1, d4fk8b1
        automated match to d1a8pa2
        complexed with fad
  4. 1359239Human (Homo sapiens) [TaxId:9606] [226188] (2 PDB entries)
    1. Domain for 3qfs:
    2. Domain for 3qft:
  5. 1359242Leptospira interrogans [TaxId:173] [225434] (2 PDB entries)
    1. Domains for 2rc5:
      1. 1359243Domain d2rc5a2: 2rc5 A:159-314 [206043]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      2. 1359244Domain d2rc5b2: 2rc5 B:159-314 [206045]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      3. 1359245Domain d2rc5c2: 2rc5 C:159-314 [206047]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      4. 1359246Domain d2rc5d2: 2rc5 D:159-314 [206049]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
    2. Domains for 2rc6:
      1. 1359247Domain d2rc6a2: 2rc6 A:159-314 [206051]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      2. 1359248Domain d2rc6b2: 2rc6 B:159-314 [206053]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      3. 1359249Domain d2rc6c2: 2rc6 C:159-314 [206055]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      4. 1359250Domain d2rc6d2: 2rc6 D:159-314 [206057]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
  6. 1359251Maize (Zea mays) [TaxId:4577] [226538] (5 PDB entries)
    1. Domain for 3lo8:
    2. Domain for 3lvb:
    3. Domains for 3vo1:
      1. 1359256Domain d3vo1a2: 3vo1 A:155-314 [217946]
        Other proteins in same PDB: d3vo1a1, d3vo1b1
        automated match to d1frna2
        complexed with fad
      2. 1359257Domain d3vo1b2: 3vo1 B:155-314 [217948]
        Other proteins in same PDB: d3vo1a1, d3vo1b1
        automated match to d1frna2
        complexed with fad
    4. Domains for 3vo2:
      1. 1359253Domain d3vo2a2: 3vo2 A:155-314 [217950]
        Other proteins in same PDB: d3vo2a1, d3vo2b1
        automated match to d1frna2
        complexed with fad
      2. 1359254Domain d3vo2b2: 3vo2 B:160-314 [217952]
        Other proteins in same PDB: d3vo2a1, d3vo2b1
        automated match to d1qfza2
        complexed with fad
    5. Domains for 3w5u:
      1. 1359258Domain d3w5ua2: 3w5u A:155-314 [201273]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      2. 1359259Domain d3w5uc2: 3w5u C:155-314 [201275]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      3. 1359260Domain d3w5ue2: 3w5u E:155-314 [201278]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      4. 1359261Domain d3w5ug2: 3w5u G:155-314 [201281]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
  7. 1359262Nostoc sp. [TaxId:1168] [225653] (2 PDB entries)
    1. Domain for 2vyq:
    2. Domain for 2vzl:
  8. 1359265Rhodobacter capsulatus [TaxId:1061] [225020] (7 PDB entries)
    1. Domain for 2bgi:
    2. Domains for 2bgj:
      1. 1359273Domain d2bgja2: 2bgj A:114-272 [203597]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      2. 1359274Domain d2bgjb2: 2bgj B:114-272 [203599]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      3. 1359275Domain d2bgjc2: 2bgj C:114-272 [203601]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      4. 1359276Domain d2bgjd2: 2bgj D:114-272 [203603]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
    3. Domain for 2vnh:
    4. Domain for 2vni:
    5. Domain for 2vnj:
    6. Domains for 2vnk:
      1. 1359269Domain d2vnka2: 2vnk A:114-272 [206390]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      2. 1359270Domain d2vnkb2: 2vnk B:114-269 [206392]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      3. 1359271Domain d2vnkc2: 2vnk C:114-272 [206394]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      4. 1359272Domain d2vnkd2: 2vnk D:114-269 [206396]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
    7. Domains for 4k1x:
      1. 1359267Domain d4k1xa2: 4k1x A:114-266 [228950]
        Other proteins in same PDB: d4k1xa1, d4k1xb1
        automated match to d2vnha2
        complexed with fad, so4; mutant
      2. 1359268Domain d4k1xb2: 4k1x B:114-266 [235078]
        Other proteins in same PDB: d4k1xa1, d4k1xb1
        automated match to d4k1xa2
        complexed with fad, so4; mutant
  9. 1359280Slime mold (Physarum polycephalum) [TaxId:5791] [225254] (1 PDB entry)
  10. 1359283Synechococcus sp. [TaxId:32049] [225028] (1 PDB entry)
  11. 1359286Vibrio cholerae [TaxId:243277] [226358] (1 PDB entry)
  12. 1359289Xanthomonas axonopodis [TaxId:190486] [234121] (1 PDB entry)

More info for Protein automated matches from c.25.1.0: automated matches

Timeline for Protein automated matches from c.25.1.0: automated matches: