SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105127Fold c.25: Ferredoxin reductase-like, C-terminal NADP-linked domain [52342] (1 superfamily)
    3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145
  4. 2105128Superfamily c.25.1: Ferredoxin reductase-like, C-terminal NADP-linked domain [52343] (6 families) (S)
    binds NADP differently than classical Rossmann-fold
    N-terminal FAD-linked domain contains (6,10) barrel
  5. 2105290Family c.25.1.0: automated matches [227163] (1 protein)
    not a true family
  6. 2105291Protein automated matches [226871] (18 species)
    not a true protein

Species:

  1. 2105292Anabaena sp. [TaxId:1168] [226793] (1 PDB entry)
  2. 2105294Bacillus megaterium [TaxId:1404] [226323] (2 PDB entries)
    1. Domains for 4dqk:
      1. 2105297Domain d4dqka2: 4dqk A:888-1048 [219937]
        Other proteins in same PDB: d4dqka1, d4dqkb1
        automated match to d1tlla3
        complexed with fad, pg4, so4
      2. 2105298Domain d4dqkb2: 4dqk B:888-1048 [219939]
        Other proteins in same PDB: d4dqka1, d4dqkb1
        automated match to d1tlla3
        complexed with fad, pg4, so4
    2. Domains for 4dql:
      1. 2105295Domain d4dqla2: 4dql A:888-1049 [219941]
        Other proteins in same PDB: d4dqla1, d4dqlb1
        automated match to d1tlla3
        complexed with 1pe, fad, nap, pg4, so4
      2. 2105296Domain d4dqlb2: 4dql B:888-1049 [219943]
        Other proteins in same PDB: d4dqla1, d4dqlb1
        automated match to d1tlla3
        complexed with 1pe, fad, nap, pg4, so4
  3. 2105299Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255833] (1 PDB entry)
  4. 2105301Burkholderia thailandensis [TaxId:271848] [226397] (2 PDB entries)
    1. Domains for 4f7d:
      1. 2105304Domain d4f7da2: 4f7d A:116-270 [221057]
        Other proteins in same PDB: d4f7da1, d4f7db1
        automated match to d1a8pa2
      2. 2105305Domain d4f7db2: 4f7d B:116-271 [221059]
        Other proteins in same PDB: d4f7da1, d4f7db1
        automated match to d1a8pa2
    2. Domains for 4fk8:
      1. 2105302Domain d4fk8a2: 4fk8 A:116-271 [221245]
        Other proteins in same PDB: d4fk8a1, d4fk8b1
        automated match to d1a8pa2
        complexed with fad
      2. 2105303Domain d4fk8b2: 4fk8 B:116-271 [221247]
        Other proteins in same PDB: d4fk8a1, d4fk8b1
        automated match to d1a8pa2
        complexed with fad
  5. 2105306Human (Homo sapiens) [TaxId:9606] [226188] (7 PDB entries)
    1. Domains for 3qe2:
      1. 2105309Domain d3qe2a3: 3qe2 A:522-680 [248859]
        Other proteins in same PDB: d3qe2a1, d3qe2a2, d3qe2b1, d3qe2b2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap
      2. 2105310Domain d3qe2b3: 3qe2 B:522-680 [248862]
        Other proteins in same PDB: d3qe2a1, d3qe2a2, d3qe2b1, d3qe2b2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap
    2. Domains for 3qfc:
      1. 2105311Domain d3qfca3: 3qfc A:522-680 [248871]
        Other proteins in same PDB: d3qfca1, d3qfca2, d3qfcb1, d3qfcb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
      2. 2105312Domain d3qfcb3: 3qfc B:522-680 [248874]
        Other proteins in same PDB: d3qfca1, d3qfca2, d3qfcb1, d3qfcb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
    3. Domains for 3qfr:
      1. 2105313Domain d3qfra3: 3qfr A:522-680 [248877]
        Other proteins in same PDB: d3qfra1, d3qfra2, d3qfrb1, d3qfrb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
      2. 2105314Domain d3qfrb3: 3qfr B:522-680 [248880]
        Other proteins in same PDB: d3qfra1, d3qfra2, d3qfrb1, d3qfrb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
    4. Domain for 3qfs:
    5. Domain for 3qft:
    6. Domains for 5emn:
      1. 2277952Domain d5emnb3: 5emn B:522-680 [321253]
        Other proteins in same PDB: d5emna1, d5emna2, d5emnb1, d5emnb2
        automated match to d1j9za3
        complexed with fad, fmn, nap; mutant
      2. 2277964Domain d5emna3: 5emn A:522-680 [321265]
        Other proteins in same PDB: d5emna1, d5emna2, d5emnb1, d5emnb2
        automated match to d1j9za3
        complexed with fad, fmn, nap; mutant
    7. Domains for 5fa6:
      1. 2277967Domain d5fa6a3: 5fa6 A:522-680 [321268]
        Other proteins in same PDB: d5fa6a1, d5fa6a2, d5fa6b1, d5fa6b2
        automated match to d1j9za3
        complexed with fad, fmn, nap
      2. 2277991Domain d5fa6b3: 5fa6 B:522-680 [321292]
        Other proteins in same PDB: d5fa6a1, d5fa6a2, d5fa6b1, d5fa6b2
        automated match to d1j9za3
        complexed with fad, fmn, nap
  6. 2105315Leptospira interrogans [TaxId:173] [225434] (2 PDB entries)
    1. Domains for 2rc5:
      1. 2105316Domain d2rc5a2: 2rc5 A:159-314 [206043]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      2. 2105317Domain d2rc5b2: 2rc5 B:159-314 [206045]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      3. 2105318Domain d2rc5c2: 2rc5 C:159-314 [206047]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      4. 2105319Domain d2rc5d2: 2rc5 D:159-314 [206049]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
    2. Domains for 2rc6:
      1. 2105320Domain d2rc6a2: 2rc6 A:159-314 [206051]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      2. 2105321Domain d2rc6b2: 2rc6 B:159-314 [206053]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      3. 2105322Domain d2rc6c2: 2rc6 C:159-314 [206055]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      4. 2105323Domain d2rc6d2: 2rc6 D:159-314 [206057]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
  7. 2105324Maize (Zea mays) [TaxId:4577] [226538] (7 PDB entries)
    1. Domain for 3lo8:
    2. Domain for 3lvb:
    3. Domains for 3vo1:
      1. 2105329Domain d3vo1a2: 3vo1 A:155-314 [217946]
        Other proteins in same PDB: d3vo1a1, d3vo1b1
        automated match to d1frna2
        complexed with fad
      2. 2105330Domain d3vo1b2: 3vo1 B:155-314 [217948]
        Other proteins in same PDB: d3vo1a1, d3vo1b1
        automated match to d1frna2
        complexed with fad
    4. Domains for 3vo2:
      1. 2105326Domain d3vo2a2: 3vo2 A:155-314 [217950]
        Other proteins in same PDB: d3vo2a1, d3vo2b1
        automated match to d1frna2
        complexed with fad
      2. 2105327Domain d3vo2b2: 3vo2 B:160-314 [217952]
        Other proteins in same PDB: d3vo2a1, d3vo2b1
        automated match to d1qfza2
        complexed with fad
    5. Domains for 3w5u:
      1. 2105331Domain d3w5ua2: 3w5u A:155-314 [201273]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      2. 2105332Domain d3w5uc2: 3w5u C:155-314 [201275]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      3. 2105333Domain d3w5ue2: 3w5u E:155-314 [201278]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      4. 2105334Domain d3w5ug2: 3w5u G:155-314 [201281]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
    6. Domain for 5h59:
    7. Domains for 5h5j:
      1. 2285884Domain d5h5ja2: 5h5j A:158-317 [329185]
        Other proteins in same PDB: d5h5ja1, d5h5jb_, d5h5jc1
        automated match to d3lo8a2
        complexed with fad, fes
      2. 2285899Domain d5h5jc2: 5h5j C:158-317 [329200]
        Other proteins in same PDB: d5h5ja1, d5h5jb_, d5h5jc1
        automated match to d3lo8a2
        complexed with fad, fes
  8. 2105335Norway rat (Rattus norvegicus) [TaxId:10116] [256001] (10 PDB entries)
    1. Domain for 3ojw:
    2. Domain for 3ojx:
    3. Domains for 4y7c:
      1. 2268585Domain d4y7ca3: 4y7c A:519-678 [311891]
        Other proteins in same PDB: d4y7ca1, d4y7ca2, d4y7cb1, d4y7cb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
      2. 2270979Domain d4y7cb3: 4y7c B:519-678 [314284]
        Other proteins in same PDB: d4y7ca1, d4y7ca2, d4y7cb1, d4y7cb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
    4. Domains for 4y9r:
      1. 2268580Domain d4y9ra3: 4y9r A:519-678 [311886]
        Other proteins in same PDB: d4y9ra1, d4y9ra2, d4y9rb1, d4y9rb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
      2. 2270619Domain d4y9rb3: 4y9r B:519-678 [313924]
        Other proteins in same PDB: d4y9ra1, d4y9ra2, d4y9rb1, d4y9rb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
    5. Domains for 4y9u:
      1. 2269176Domain d4y9ub3: 4y9u B:519-678 [312482]
        Other proteins in same PDB: d4y9ua1, d4y9ua2, d4y9ub1, d4y9ub2
        automated match to d1j9za3
      2. 2270625Domain d4y9ua3: 4y9u A:519-678 [313930]
        Other proteins in same PDB: d4y9ua1, d4y9ua2, d4y9ub1, d4y9ub2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
    6. Domains for 4yaf:
      1. 2268943Domain d4yafa3: 4yaf A:519-678 [312249]
        Other proteins in same PDB: d4yafa1, d4yafa2, d4yafb1, d4yafb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4
      2. 2269134Domain d4yafb3: 4yaf B:519-678 [312440]
        Other proteins in same PDB: d4yafa1, d4yafa2, d4yafb1, d4yafb2
        automated match to d1j9za3
    7. Domains for 4yal:
      1. 2268597Domain d4yalb3: 4yal B:519-678 [311903]
        Other proteins in same PDB: d4yala1, d4yala2, d4yalb1, d4yalb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4
      2. 2271068Domain d4yala3: 4yal A:519-678 [314373]
        Other proteins in same PDB: d4yala1, d4yala2, d4yalb1, d4yalb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4
    8. Domains for 4yao:
      1. 2268689Domain d4yaoa3: 4yao A:519-678 [311995]
        Other proteins in same PDB: d4yaoa1, d4yaoa2, d4yaob1, d4yaob2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
      2. 2268785Domain d4yaob3: 4yao B:519-678 [312091]
        Other proteins in same PDB: d4yaoa1, d4yaoa2, d4yaob1, d4yaob2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
    9. Domains for 4yau:
      1. 2268641Domain d4yaua3: 4yau A:519-678 [311947]
        Other proteins in same PDB: d4yaua1, d4yaua2, d4yaub1, d4yaub2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
      2. 2268665Domain d4yaub3: 4yau B:519-678 [311971]
        Other proteins in same PDB: d4yaua1, d4yaua2, d4yaub1, d4yaub2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
    10. Domains for 4yaw:
      1. 2268632Domain d4yawb3: 4yaw B:519-678 [311938]
        Other proteins in same PDB: d4yawa1, d4yawa2, d4yawb1, d4yawb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
      2. 2270658Domain d4yawa3: 4yaw A:519-678 [313963]
        Other proteins in same PDB: d4yawa1, d4yawa2, d4yawb1, d4yawb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
  9. 2105338Nostoc sp. [TaxId:1168] [225653] (2 PDB entries)
    1. Domain for 2vyq:
    2. Domain for 2vzl:
  10. 2105341Ralstonia eutropha [TaxId:381666] [256011] (3 PDB entries)
    1. Domain for 3ozu:
    2. Domains for 3ozv:
      1. 2105345Domain d3ozva3: 3ozv A:262-403 [248384]
        Other proteins in same PDB: d3ozva1, d3ozva2, d3ozvb1, d3ozvb2
        automated match to d1cqxa3
        complexed with dgg, ecn, fad, hem, po4
      2. 2105346Domain d3ozvb3: 3ozv B:262-403 [248387]
        Other proteins in same PDB: d3ozva1, d3ozva2, d3ozvb1, d3ozvb2
        automated match to d1cqxa3
        complexed with dgg, ecn, fad, hem, po4
    3. Domains for 3ozw:
      1. 2105343Domain d3ozwa3: 3ozw A:262-403 [248390]
        Other proteins in same PDB: d3ozwa1, d3ozwa2, d3ozwb1, d3ozwb2
        automated match to d1cqxa3
        complexed with dgg, fad, hem, kkk, po4
      2. 2105344Domain d3ozwb3: 3ozw B:262-403 [248393]
        Other proteins in same PDB: d3ozwa1, d3ozwa2, d3ozwb1, d3ozwb2
        automated match to d1cqxa3
        complexed with dgg, fad, hem, kkk, po4
  11. 2105347Rhodobacter capsulatus [TaxId:1061] [225020] (7 PDB entries)
    1. Domain for 2bgi:
    2. Domains for 2bgj:
      1. 2105355Domain d2bgja2: 2bgj A:114-272 [203597]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      2. 2105356Domain d2bgjb2: 2bgj B:114-272 [203599]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      3. 2105357Domain d2bgjc2: 2bgj C:114-272 [203601]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      4. 2105358Domain d2bgjd2: 2bgj D:114-272 [203603]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
    3. Domain for 2vnh:
    4. Domain for 2vni:
    5. Domain for 2vnj:
    6. Domains for 2vnk:
      1. 2105351Domain d2vnka2: 2vnk A:114-272 [206390]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      2. 2105352Domain d2vnkb2: 2vnk B:114-269 [206392]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      3. 2105353Domain d2vnkc2: 2vnk C:114-272 [206394]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      4. 2105354Domain d2vnkd2: 2vnk D:114-269 [206396]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
    7. Domains for 4k1x:
      1. 2105349Domain d4k1xa2: 4k1x A:114-266 [228950]
        Other proteins in same PDB: d4k1xa1, d4k1xb1
        automated match to d2vnha2
        complexed with fad, so4; mutant
      2. 2105350Domain d4k1xb2: 4k1x B:114-266 [235078]
        Other proteins in same PDB: d4k1xa1, d4k1xb1
        automated match to d4k1xa2
        complexed with fad, so4; mutant
  12. 2105362Slime mold (Physarum polycephalum) [TaxId:5791] [225254] (1 PDB entry)
  13. 2105365Synechococcus sp. [TaxId:32049] [225028] (1 PDB entry)
  14. 2105368Vibrio cholerae [TaxId:243277] [226358] (1 PDB entry)
  15. 2105371Xanthomonas axonopodis [TaxId:190486] [234121] (1 PDB entry)
  16. 2281011Neisseria gonorrhoeae [TaxId:1351790] [324312] (2 PDB entries)
    1. Domain for 5thx:
    2. Domains for 5tr9:
      1. 2282790Domain d5tr9b2: 5tr9 B:115-267 [326091]
        Other proteins in same PDB: d5tr9a1, d5tr9b1
        automated match to d3fpka2
        complexed with cl, edo, fad, mg, na
      2. 2282872Domain d5tr9a2: 5tr9 A:115-267 [326173]
        Other proteins in same PDB: d5tr9a1, d5tr9b1
        automated match to d3fpka2
        complexed with cl, edo, fad, mg, na
  17. 2285444Neisseria gonorrhoeae [TaxId:521006] [328745] (1 PDB entry)
  18. 2285525Arabidopsis thaliana [TaxId:3702] [328826] (1 PDB entry)

More info for Protein automated matches from c.25.1.0: automated matches

Timeline for Protein automated matches from c.25.1.0: automated matches: