Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105127Fold c.25: Ferredoxin reductase-like, C-terminal NADP-linked domain [52342] (1 superfamily)
    3 layers, a/b/a; parallel beta-sheet of 5 strands, order 32145
  4. 2105128Superfamily c.25.1: Ferredoxin reductase-like, C-terminal NADP-linked domain [52343] (6 families) (S)
    binds NADP differently than classical Rossmann-fold
    N-terminal FAD-linked domain contains (6,10) barrel
  5. 2105290Family c.25.1.0: automated matches [227163] (1 protein)
    not a true family
  6. 2105291Protein automated matches [226871] (18 species)
    not a true protein

Species:

  1. 2105292Anabaena sp. [TaxId:1168] [226793] (1 PDB entry)
  2. 2105294Bacillus megaterium [TaxId:1404] [226323] (2 PDB entries)
    1. Domains for 4dqk:
      1. 2105297Domain d4dqka2: 4dqk A:888-1048 [219937]
        Other proteins in same PDB: d4dqka1, d4dqkb1
        automated match to d1tlla3
        complexed with fad, pg4, so4
      2. 2105298Domain d4dqkb2: 4dqk B:888-1048 [219939]
        Other proteins in same PDB: d4dqka1, d4dqkb1
        automated match to d1tlla3
        complexed with fad, pg4, so4
    2. Domains for 4dql:
      1. 2105295Domain d4dqla2: 4dql A:888-1049 [219941]
        Other proteins in same PDB: d4dqla1, d4dqlb1
        automated match to d1tlla3
        complexed with 1pe, fad, nap, pg4, so4
      2. 2105296Domain d4dqlb2: 4dql B:888-1049 [219943]
        Other proteins in same PDB: d4dqla1, d4dqlb1
        automated match to d1tlla3
        complexed with 1pe, fad, nap, pg4, so4
  3. 2105299Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255833] (1 PDB entry)
  4. 2105301Burkholderia thailandensis [TaxId:271848] [226397] (2 PDB entries)
    1. Domains for 4f7d:
      1. 2105304Domain d4f7da2: 4f7d A:116-270 [221057]
        Other proteins in same PDB: d4f7da1, d4f7db1
        automated match to d1a8pa2
      2. 2105305Domain d4f7db2: 4f7d B:116-271 [221059]
        Other proteins in same PDB: d4f7da1, d4f7db1
        automated match to d1a8pa2
    2. Domains for 4fk8:
      1. 2105302Domain d4fk8a2: 4fk8 A:116-271 [221245]
        Other proteins in same PDB: d4fk8a1, d4fk8b1
        automated match to d1a8pa2
        complexed with fad
      2. 2105303Domain d4fk8b2: 4fk8 B:116-271 [221247]
        Other proteins in same PDB: d4fk8a1, d4fk8b1
        automated match to d1a8pa2
        complexed with fad
  5. 2105306Human (Homo sapiens) [TaxId:9606] [226188] (7 PDB entries)
    1. Domains for 3qe2:
      1. 2105309Domain d3qe2a3: 3qe2 A:522-680 [248859]
        Other proteins in same PDB: d3qe2a1, d3qe2a2, d3qe2b1, d3qe2b2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap
      2. 2105310Domain d3qe2b3: 3qe2 B:522-680 [248862]
        Other proteins in same PDB: d3qe2a1, d3qe2a2, d3qe2b1, d3qe2b2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap
    2. Domains for 3qfc:
      1. 2105311Domain d3qfca3: 3qfc A:522-680 [248871]
        Other proteins in same PDB: d3qfca1, d3qfca2, d3qfcb1, d3qfcb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
      2. 2105312Domain d3qfcb3: 3qfc B:522-680 [248874]
        Other proteins in same PDB: d3qfca1, d3qfca2, d3qfcb1, d3qfcb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
    3. Domains for 3qfr:
      1. 2105313Domain d3qfra3: 3qfr A:522-680 [248877]
        Other proteins in same PDB: d3qfra1, d3qfra2, d3qfrb1, d3qfrb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
      2. 2105314Domain d3qfrb3: 3qfr B:522-680 [248880]
        Other proteins in same PDB: d3qfra1, d3qfra2, d3qfrb1, d3qfrb2
        automated match to d1j9za3
        complexed with ca, fad, fmn, nap; mutant
    4. Domain for 3qfs:
    5. Domain for 3qft:
    6. Domains for 5emn:
      1. 2277952Domain d5emnb3: 5emn B:522-680 [321253]
        Other proteins in same PDB: d5emna1, d5emna2, d5emnb1, d5emnb2
        automated match to d1j9za3
        complexed with fad, fmn, nap; mutant
      2. 2277964Domain d5emna3: 5emn A:522-680 [321265]
        Other proteins in same PDB: d5emna1, d5emna2, d5emnb1, d5emnb2
        automated match to d1j9za3
        complexed with fad, fmn, nap; mutant
    7. Domains for 5fa6:
      1. 2277967Domain d5fa6a3: 5fa6 A:522-680 [321268]
        Other proteins in same PDB: d5fa6a1, d5fa6a2, d5fa6b1, d5fa6b2
        automated match to d1j9za3
        complexed with fad, fmn, nap
      2. 2277991Domain d5fa6b3: 5fa6 B:522-680 [321292]
        Other proteins in same PDB: d5fa6a1, d5fa6a2, d5fa6b1, d5fa6b2
        automated match to d1j9za3
        complexed with fad, fmn, nap
  6. 2105315Leptospira interrogans [TaxId:173] [225434] (2 PDB entries)
    1. Domains for 2rc5:
      1. 2105316Domain d2rc5a2: 2rc5 A:159-314 [206043]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      2. 2105317Domain d2rc5b2: 2rc5 B:159-314 [206045]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      3. 2105318Domain d2rc5c2: 2rc5 C:159-314 [206047]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
      4. 2105319Domain d2rc5d2: 2rc5 D:159-314 [206049]
        Other proteins in same PDB: d2rc5a1, d2rc5b1, d2rc5c1, d2rc5d1
        automated match to d1qufa2
        complexed with fad, so4, zn
    2. Domains for 2rc6:
      1. 2105320Domain d2rc6a2: 2rc6 A:159-314 [206051]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      2. 2105321Domain d2rc6b2: 2rc6 B:159-314 [206053]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      3. 2105322Domain d2rc6c2: 2rc6 C:159-314 [206055]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
      4. 2105323Domain d2rc6d2: 2rc6 D:159-314 [206057]
        Other proteins in same PDB: d2rc6a1, d2rc6b1, d2rc6c1, d2rc6d1
        automated match to d1qufa2
        complexed with fad, nap, so4, zn
  7. 2105324Maize (Zea mays) [TaxId:4577] [226538] (17 PDB entries)
    1. Domain for 3lo8:
    2. Domain for 3lvb:
    3. Domains for 3vo1:
      1. 2105329Domain d3vo1a2: 3vo1 A:155-314 [217946]
        Other proteins in same PDB: d3vo1a1, d3vo1b1
        automated match to d1frna2
        complexed with fad
      2. 2105330Domain d3vo1b2: 3vo1 B:155-314 [217948]
        Other proteins in same PDB: d3vo1a1, d3vo1b1
        automated match to d1frna2
        complexed with fad
    4. Domains for 3vo2:
      1. 2105326Domain d3vo2a2: 3vo2 A:155-314 [217950]
        Other proteins in same PDB: d3vo2a1, d3vo2b1
        automated match to d1frna2
        complexed with fad
      2. 2105327Domain d3vo2b2: 3vo2 B:160-314 [217952]
        Other proteins in same PDB: d3vo2a1, d3vo2b1
        automated match to d1qfza2
        complexed with fad
    5. Domains for 3w5u:
      1. 2105331Domain d3w5ua2: 3w5u A:155-314 [201273]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      2. 2105332Domain d3w5uc2: 3w5u C:155-314 [201275]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      3. 2105333Domain d3w5ue2: 3w5u E:155-314 [201278]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
      4. 2105334Domain d3w5ug2: 3w5u G:155-314 [201281]
        Other proteins in same PDB: d3w5ua1, d3w5ub_, d3w5uc1, d3w5ud_, d3w5ue1, d3w5uf_, d3w5ug1, d3w5uh_
        automated match to d1frna2
        complexed with fad, fes
    6. Domain for 5h59:
    7. Domains for 5h5j:
      1. 2285884Domain d5h5ja2: 5h5j A:158-317 [329185]
        Other proteins in same PDB: d5h5ja1, d5h5jb_, d5h5jc1
        automated match to d3lo8a2
        complexed with fad, fes
      2. 2285899Domain d5h5jc2: 5h5j C:158-317 [329200]
        Other proteins in same PDB: d5h5ja1, d5h5jb_, d5h5jc1
        automated match to d3lo8a2
        complexed with fad, fes
    8. Domain for 5vw2:
    9. Domain for 5vw3:
    10. Domain for 5vw4:
    11. Domain for 5vw5:
    12. Domain for 5vw6:
    13. Domain for 5vw7:
    14. Domain for 5vw8:
    15. Domain for 5vw9:
    16. Domain for 5vwa:
    17. Domain for 5vwb:
  8. 2105335Norway rat (Rattus norvegicus) [TaxId:10116] [256001] (10 PDB entries)
    1. Domain for 3ojw:
    2. Domain for 3ojx:
    3. Domains for 4y7c:
      1. 2268585Domain d4y7ca3: 4y7c A:519-678 [311891]
        Other proteins in same PDB: d4y7ca1, d4y7ca2, d4y7cb1, d4y7cb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
      2. 2270979Domain d4y7cb3: 4y7c B:519-678 [314284]
        Other proteins in same PDB: d4y7ca1, d4y7ca2, d4y7cb1, d4y7cb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
    4. Domains for 4y9r:
      1. 2268580Domain d4y9ra3: 4y9r A:519-678 [311886]
        Other proteins in same PDB: d4y9ra1, d4y9ra2, d4y9rb1, d4y9rb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
      2. 2270619Domain d4y9rb3: 4y9r B:519-678 [313924]
        Other proteins in same PDB: d4y9ra1, d4y9ra2, d4y9rb1, d4y9rb2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
    5. Domains for 4y9u:
      1. 2269176Domain d4y9ub3: 4y9u B:519-678 [312482]
        Other proteins in same PDB: d4y9ua1, d4y9ua2, d4y9ub1, d4y9ub2
        automated match to d1j9za3
      2. 2270625Domain d4y9ua3: 4y9u A:519-678 [313930]
        Other proteins in same PDB: d4y9ua1, d4y9ua2, d4y9ub1, d4y9ub2
        automated match to d1j9za3
        complexed with fad, fmn, nap, po4; mutant
    6. Domains for 4yaf:
      1. 2268943Domain d4yafa3: 4yaf A:519-678 [312249]
        Other proteins in same PDB: d4yafa1, d4yafa2, d4yafb1, d4yafb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4
      2. 2269134Domain d4yafb3: 4yaf B:519-678 [312440]
        Other proteins in same PDB: d4yafa1, d4yafa2, d4yafb1, d4yafb2
        automated match to d1j9za3
    7. Domains for 4yal:
      1. 2268597Domain d4yalb3: 4yal B:519-678 [311903]
        Other proteins in same PDB: d4yala1, d4yala2, d4yalb1, d4yalb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4
      2. 2271068Domain d4yala3: 4yal A:519-678 [314373]
        Other proteins in same PDB: d4yala1, d4yala2, d4yalb1, d4yalb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4
    8. Domains for 4yao:
      1. 2268689Domain d4yaoa3: 4yao A:519-678 [311995]
        Other proteins in same PDB: d4yaoa1, d4yaoa2, d4yaob1, d4yaob2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
      2. 2268785Domain d4yaob3: 4yao B:519-678 [312091]
        Other proteins in same PDB: d4yaoa1, d4yaoa2, d4yaob1, d4yaob2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
    9. Domains for 4yau:
      1. 2268641Domain d4yaua3: 4yau A:519-678 [311947]
        Other proteins in same PDB: d4yaua1, d4yaua2, d4yaub1, d4yaub2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
      2. 2268665Domain d4yaub3: 4yau B:519-678 [311971]
        Other proteins in same PDB: d4yaua1, d4yaua2, d4yaub1, d4yaub2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
    10. Domains for 4yaw:
      1. 2268632Domain d4yawb3: 4yaw B:519-678 [311938]
        Other proteins in same PDB: d4yawa1, d4yawa2, d4yawb1, d4yawb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
      2. 2270658Domain d4yawa3: 4yaw A:519-678 [313963]
        Other proteins in same PDB: d4yawa1, d4yawa2, d4yawb1, d4yawb2
        automated match to d1j9za3
        complexed with 2am, fad, fmn, po4; mutant
  9. 2105338Nostoc sp. [TaxId:1168] [225653] (2 PDB entries)
    1. Domain for 2vyq:
    2. Domain for 2vzl:
  10. 2105341Ralstonia eutropha [TaxId:381666] [256011] (3 PDB entries)
    1. Domain for 3ozu:
    2. Domains for 3ozv:
      1. 2105345Domain d3ozva3: 3ozv A:262-403 [248384]
        Other proteins in same PDB: d3ozva1, d3ozva2, d3ozvb1, d3ozvb2
        automated match to d1cqxa3
        complexed with dgg, ecn, fad, hem, po4
      2. 2105346Domain d3ozvb3: 3ozv B:262-403 [248387]
        Other proteins in same PDB: d3ozva1, d3ozva2, d3ozvb1, d3ozvb2
        automated match to d1cqxa3
        complexed with dgg, ecn, fad, hem, po4
    3. Domains for 3ozw:
      1. 2105343Domain d3ozwa3: 3ozw A:262-403 [248390]
        Other proteins in same PDB: d3ozwa1, d3ozwa2, d3ozwb1, d3ozwb2
        automated match to d1cqxa3
        complexed with dgg, fad, hem, kkk, po4
      2. 2105344Domain d3ozwb3: 3ozw B:262-403 [248393]
        Other proteins in same PDB: d3ozwa1, d3ozwa2, d3ozwb1, d3ozwb2
        automated match to d1cqxa3
        complexed with dgg, fad, hem, kkk, po4
  11. 2105347Rhodobacter capsulatus [TaxId:1061] [225020] (7 PDB entries)
    1. Domain for 2bgi:
    2. Domains for 2bgj:
      1. 2105355Domain d2bgja2: 2bgj A:114-272 [203597]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      2. 2105356Domain d2bgjb2: 2bgj B:114-272 [203599]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      3. 2105357Domain d2bgjc2: 2bgj C:114-272 [203601]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
      4. 2105358Domain d2bgjd2: 2bgj D:114-272 [203603]
        Other proteins in same PDB: d2bgja1, d2bgjb1, d2bgjc1, d2bgjd1
        automated match to d1a8pa2
        complexed with fad
    3. Domain for 2vnh:
    4. Domain for 2vni:
    5. Domain for 2vnj:
    6. Domains for 2vnk:
      1. 2105351Domain d2vnka2: 2vnk A:114-272 [206390]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      2. 2105352Domain d2vnkb2: 2vnk B:114-269 [206392]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      3. 2105353Domain d2vnkc2: 2vnk C:114-272 [206394]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
      4. 2105354Domain d2vnkd2: 2vnk D:114-269 [206396]
        Other proteins in same PDB: d2vnka1, d2vnkb1, d2vnkc1, d2vnkd1
        automated match to d1a8pa2
        complexed with fad, nap
    7. Domains for 4k1x:
      1. 2105349Domain d4k1xa2: 4k1x A:114-266 [228950]
        Other proteins in same PDB: d4k1xa1, d4k1xb1
        automated match to d2vnha2
        complexed with fad, so4; mutant
      2. 2105350Domain d4k1xb2: 4k1x B:114-266 [235078]
        Other proteins in same PDB: d4k1xa1, d4k1xb1
        automated match to d4k1xa2
        complexed with fad, so4; mutant
  12. 2105362Slime mold (Physarum polycephalum) [TaxId:5791] [225254] (1 PDB entry)
  13. 2105365Synechococcus sp. [TaxId:32049] [225028] (1 PDB entry)
  14. 2105368Vibrio cholerae [TaxId:243277] [226358] (1 PDB entry)
  15. 2105371Xanthomonas axonopodis [TaxId:190486] [234121] (1 PDB entry)
  16. 2281011Neisseria gonorrhoeae [TaxId:1351790] [324312] (2 PDB entries)
    1. Domain for 5thx:
    2. Domains for 5tr9:
      1. 2282790Domain d5tr9b2: 5tr9 B:115-267 [326091]
        Other proteins in same PDB: d5tr9a1, d5tr9b1
        automated match to d3fpka2
        complexed with cl, edo, fad, mg, na
      2. 2282872Domain d5tr9a2: 5tr9 A:115-267 [326173]
        Other proteins in same PDB: d5tr9a1, d5tr9b1
        automated match to d3fpka2
        complexed with cl, edo, fad, mg, na
  17. 2285444Neisseria gonorrhoeae [TaxId:521006] [328745] (1 PDB entry)
  18. 2285525Arabidopsis thaliana [TaxId:3702] [328826] (1 PDB entry)

More info for Protein automated matches from c.25.1.0: automated matches

Timeline for Protein automated matches from c.25.1.0: automated matches: