Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2054165Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
    barrel, closed; n=6, S=10; greek-key
  4. 2054655Superfamily b.43.4: Riboflavin synthase domain-like [63380] (4 families) (S)
  5. 2054836Family b.43.4.0: automated matches [227162] (1 protein)
    not a true family
  6. 2054837Protein automated matches [226870] (20 species)
    not a true protein

Species:

  1. 2054838Anabaena sp. [TaxId:1168] [226792] (1 PDB entry)
  2. 2054840Bacillus megaterium [TaxId:1404] [226322] (2 PDB entries)
    1. Domains for 4dqk:
      1. 2054843Domain d4dqka1: 4dqk A:659-887 [219936]
        Other proteins in same PDB: d4dqka2, d4dqkb2
        automated match to d1tlla1
        complexed with fad, pg4, so4
      2. 2054844Domain d4dqkb1: 4dqk B:660-887 [219938]
        Other proteins in same PDB: d4dqka2, d4dqkb2
        automated match to d1tlla1
        complexed with fad, pg4, so4
    2. Domains for 4dql:
      1. 2054841Domain d4dqla1: 4dql A:661-887 [219940]
        Other proteins in same PDB: d4dqla2, d4dqlb2
        automated match to d1tlla1
        complexed with 1pe, fad, nap, pg4, so4
      2. 2054842Domain d4dqlb1: 4dql B:658-887 [219942]
        Other proteins in same PDB: d4dqla2, d4dqlb2
        automated match to d1tlla1
        complexed with 1pe, fad, nap, pg4, so4
  3. 2054845Brucella abortus [TaxId:235] [228298] (4 PDB entries)
    1. Domains for 4e0f:
      1. 2054864Domain d4e0fa1: 4e0f A:1-96 [228299]
        Other proteins in same PDB: d4e0fb3
        automated match to d1kzla1
        complexed with rbf
      2. 2054865Domain d4e0fa2: 4e0f A:97-200 [228300]
        Other proteins in same PDB: d4e0fb3
        automated match to d1kzla2
        complexed with rbf
      3. 2054866Domain d4e0fb1: 4e0f B:1-96 [234347]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa1
        complexed with rbf
      4. 2054867Domain d4e0fb2: 4e0f B:97-202 [234348]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa2
        complexed with rbf
      5. 2054868Domain d4e0fc1: 4e0f C:1-96 [234349]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa1
        complexed with rbf
      6. 2054869Domain d4e0fc2: 4e0f C:97-202 [234350]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa2
        complexed with rbf
    2. Domains for 4fxu:
      1. 2054858Domain d4fxua1: 4fxu A:1-96 [237583]
        automated match to d4e0fa1
      2. 2054859Domain d4fxua2: 4fxu A:97-200 [237608]
        automated match to d4e0fa2
      3. 2054860Domain d4fxub1: 4fxu B:1-96 [237581]
        automated match to d4e0fb1
      4. 2054861Domain d4fxub2: 4fxu B:97-201 [237609]
        automated match to d4e0fb2
      5. 2054862Domain d4fxuc1: 4fxu C:1-96 [237580]
        automated match to d4e0fa1
      6. 2054863Domain d4fxuc2: 4fxu C:97-197 [237610]
        automated match to d4e0fa2
    3. Domains for 4g6i:
      1. 2054852Domain d4g6ia1: 4g6i A:1-96 [237579]
        automated match to d4e0fa1
        complexed with rs3
      2. 2054853Domain d4g6ia2: 4g6i A:97-200 [237602]
        automated match to d4e0fa2
        complexed with rs3
      3. 2054854Domain d4g6ib1: 4g6i B:1-96 [237582]
        automated match to d4e0fb1
        complexed with rs3
      4. 2054855Domain d4g6ib2: 4g6i B:97-201 [237605]
        automated match to d4e0fb2
        complexed with rs3
      5. 2054856Domain d4g6ic1: 4g6i C:1-96 [237578]
        automated match to d4e0fa1
        complexed with rs3
      6. 2054857Domain d4g6ic2: 4g6i C:97-199 [237603]
        automated match to d4e0fa2
        complexed with rs3
    4. Domains for 4gqn:
      1. 2054846Domain d4gqna1: 4gqn A:1-96 [237586]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa1
        complexed with ini
      2. 2054847Domain d4gqna2: 4gqn A:97-200 [237611]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa2
        complexed with ini
      3. 2054848Domain d4gqnb1: 4gqn B:1-96 [237585]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fb1
        complexed with ini
      4. 2054849Domain d4gqnb2: 4gqn B:97-202 [237607]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fb2
        complexed with ini
      5. 2054850Domain d4gqnc1: 4gqn C:1-96 [237584]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa1
        complexed with ini
      6. 2054851Domain d4gqnc2: 4gqn C:97-200 [237606]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa2
        complexed with ini
  4. 2054870Burkholderia thailandensis [TaxId:271848] [226396] (2 PDB entries)
    1. Domains for 4f7d:
      1. 2054873Domain d4f7da1: 4f7d A:17-115 [221056]
        Other proteins in same PDB: d4f7da2, d4f7db2
        automated match to d1a8pa1
      2. 2054874Domain d4f7db1: 4f7d B:16-115 [221058]
        Other proteins in same PDB: d4f7da2, d4f7db2
        automated match to d1a8pa1
    2. Domains for 4fk8:
      1. 2054871Domain d4fk8a1: 4fk8 A:18-115 [221244]
        Other proteins in same PDB: d4fk8a2, d4fk8b2
        automated match to d1a8pa1
        complexed with fad
      2. 2054872Domain d4fk8b1: 4fk8 B:17-115 [221246]
        Other proteins in same PDB: d4fk8a2, d4fk8b2
        automated match to d1a8pa1
        complexed with fad
  5. 2054875Escherichia coli [TaxId:562] [226084] (1 PDB entry)
  6. 2054878Leptospira interrogans [TaxId:173] [225433] (2 PDB entries)
    1. Domains for 2rc5:
      1. 2054879Domain d2rc5a1: 2rc5 A:7-158 [206042]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
      2. 2054880Domain d2rc5b1: 2rc5 B:8-158 [206044]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
      3. 2054881Domain d2rc5c1: 2rc5 C:8-158 [206046]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
      4. 2054882Domain d2rc5d1: 2rc5 D:8-158 [206048]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
    2. Domains for 2rc6:
      1. 2054883Domain d2rc6a1: 2rc6 A:7-158 [206050]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
      2. 2054884Domain d2rc6b1: 2rc6 B:7-158 [206052]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
      3. 2054885Domain d2rc6c1: 2rc6 C:7-158 [206054]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
      4. 2054886Domain d2rc6d1: 2rc6 D:7-158 [206056]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
  7. 2054887Maize (Zea mays) [TaxId:4577] [226539] (17 PDB entries)
    1. Domain for 3lo8:
    2. Domain for 3lvb:
    3. Domains for 3vo1:
      1. 2054891Domain d3vo1a1: 3vo1 A:20-154 [217945]
        Other proteins in same PDB: d3vo1a2, d3vo1b2
        automated match to d1frna1
        complexed with fad
      2. 2054892Domain d3vo1b1: 3vo1 B:20-154 [217947]
        Other proteins in same PDB: d3vo1a2, d3vo1b2
        automated match to d1frna1
        complexed with fad
    4. Domain for 3vo2:
    5. Domains for 3w5u:
      1. 2054893Domain d3w5ua1: 3w5u A:19-154 [201272]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
      2. 2054894Domain d3w5uc1: 3w5u C:19-154 [201274]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
      3. 2054895Domain d3w5ue1: 3w5u E:19-154 [201277]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
      4. 2054896Domain d3w5ug1: 3w5u G:19-154 [201280]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
    6. Domain for 5h59:
    7. Domains for 5h5j:
      1. 2285883Domain d5h5ja1: 5h5j A:9-157 [329184]
        Other proteins in same PDB: d5h5ja2, d5h5jb_, d5h5jc2
        automated match to d3lvba1
        complexed with fad, fes
      2. 2285898Domain d5h5jc1: 5h5j C:9-157 [329199]
        Other proteins in same PDB: d5h5ja2, d5h5jb_, d5h5jc2
        automated match to d3lvba1
        complexed with fad, fes
    8. Domain for 5vw2:
    9. Domain for 5vw3:
    10. Domain for 5vw4:
    11. Domain for 5vw5:
    12. Domain for 5vw6:
    13. Domain for 5vw7:
    14. Domain for 5vw8:
    15. Domain for 5vw9:
    16. Domain for 5vwa:
    17. Domain for 5vwb:
  8. 2054897Nostoc sp. [TaxId:1168] [225652] (2 PDB entries)
    1. Domain for 2vyq:
    2. Domain for 2vzl:
  9. 2054900Pea (Pisum sativum) [TaxId:3888] [226803] (3 PDB entries)
    1. Domains for 2xnc:
      1. 2054901Domain d2xnca1: 2xnc A:14-139 [207279]
        Other proteins in same PDB: d2xnca2, d2xnca3, d2xncb2, d2xncb3
        automated match to d1frna1
        complexed with fad, so4
      2. 2054902Domain d2xncb1: 2xnc B:13-139 [207281]
        Other proteins in same PDB: d2xnca2, d2xnca3, d2xncb2, d2xncb3
        automated match to d1frna1
        complexed with fad, so4
    2. Domains for 4af6:
      1. 2054905Domain d4af6a1: 4af6 A:13-148 [218820]
        Other proteins in same PDB: d4af6a2, d4af6b2
        automated match to d1frna1
        complexed with fad; mutant
      2. 2054906Domain d4af6b1: 4af6 B:13-148 [218822]
        Other proteins in same PDB: d4af6a2, d4af6b2
        automated match to d1frna1
        complexed with fad; mutant
    3. Domains for 4af7:
      1. 2054903Domain d4af7a1: 4af7 A:13-148 [218824]
        Other proteins in same PDB: d4af7a2, d4af7b2
        automated match to d1frna1
        complexed with fad; mutant
      2. 2054904Domain d4af7b1: 4af7 B:14-148 [218826]
        Other proteins in same PDB: d4af7a2, d4af7b2
        automated match to d1frna1
        complexed with fad; mutant
  10. 2054907Ralstonia eutropha [TaxId:381666] [256010] (3 PDB entries)
    1. Domain for 3ozu:
    2. Domains for 3ozv:
      1. 2054911Domain d3ozva2: 3ozv A:151-261 [248383]
        Other proteins in same PDB: d3ozva1, d3ozva3, d3ozvb1, d3ozvb3
        automated match to d1cqxa2
        complexed with dgg, ecn, fad, hem, po4
      2. 2054912Domain d3ozvb2: 3ozv B:151-261 [248386]
        Other proteins in same PDB: d3ozva1, d3ozva3, d3ozvb1, d3ozvb3
        automated match to d1cqxa2
        complexed with dgg, ecn, fad, hem, po4
    3. Domains for 3ozw:
      1. 2054909Domain d3ozwa2: 3ozw A:151-261 [248389]
        Other proteins in same PDB: d3ozwa1, d3ozwa3, d3ozwb1, d3ozwb3
        automated match to d1cqxa2
        complexed with dgg, fad, hem, kkk, po4
      2. 2054910Domain d3ozwb2: 3ozw B:151-261 [248392]
        Other proteins in same PDB: d3ozwa1, d3ozwa3, d3ozwb1, d3ozwb3
        automated match to d1cqxa2
        complexed with dgg, fad, hem, kkk, po4
  11. 2054913Rhodobacter capsulatus [TaxId:1061] [225019] (7 PDB entries)
    1. Domain for 2bgi:
    2. Domains for 2bgj:
      1. 2054921Domain d2bgja1: 2bgj A:13-113 [203596]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
      2. 2054922Domain d2bgjb1: 2bgj B:16-113 [203598]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
      3. 2054923Domain d2bgjc1: 2bgj C:16-113 [203600]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
      4. 2054924Domain d2bgjd1: 2bgj D:16-113 [203602]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
    3. Domain for 2vnh:
    4. Domain for 2vni:
    5. Domain for 2vnj:
    6. Domains for 2vnk:
      1. 2054917Domain d2vnka1: 2vnk A:16-113 [206389]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
      2. 2054918Domain d2vnkb1: 2vnk B:16-113 [206391]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
      3. 2054919Domain d2vnkc1: 2vnk C:16-113 [206393]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
      4. 2054920Domain d2vnkd1: 2vnk D:16-113 [206395]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
    7. Domains for 4k1x:
      1. 2054915Domain d4k1xa1: 4k1x A:16-113 [228949]
        Other proteins in same PDB: d4k1xa2, d4k1xb2
        automated match to d2vnha1
        complexed with fad, so4; mutant
      2. 2054916Domain d4k1xb1: 4k1x B:16-113 [235077]
        Other proteins in same PDB: d4k1xa2, d4k1xb2
        automated match to d4k1xa1
        complexed with fad, so4; mutant
  12. 2054928Salmonella typhimurium [TaxId:99287] [225604] (1 PDB entry)
  13. 2054931Slime mold (Physarum polycephalum) [TaxId:5791] [225253] (1 PDB entry)
  14. 2054934Synechococcus sp. [TaxId:32049] [225027] (1 PDB entry)
  15. 2054937Vibrio cholerae [TaxId:243277] [226357] (1 PDB entry)
  16. 2054940Xanthomonas axonopodis [TaxId:190486] [234119] (1 PDB entry)
  17. 2277307Lactococcus lactis [TaxId:1360] [320608] (2 PDB entries)
    1. Domains for 5ksw:
      1. 2277308Domain d5kswb1: 5ksw B:1-102 [320609]
        Other proteins in same PDB: d5kswa_, d5kswb2, d5kswc_, d5kswd2
        automated match to d1ep3b1
        complexed with cl, edo, fad, fes, fmn; mutant
      2. 2277416Domain d5kswd1: 5ksw D:1-102 [320717]
        Other proteins in same PDB: d5kswa_, d5kswb2, d5kswc_, d5kswd2
        automated match to d1ep3b1
        complexed with cl, edo, fad, fes, fmn; mutant
    2. Domains for 5ue9:
      1. 2295376Domain d5ue9d1: 5ue9 D:1-102 [338677]
        Other proteins in same PDB: d5ue9a_, d5ue9b2, d5ue9c_, d5ue9d2
        automated match to d1ep3b1
        complexed with cl, fad, fes, fmn, gol, oro
      2. 2295398Domain d5ue9b1: 5ue9 B:1-102 [338699]
        Other proteins in same PDB: d5ue9a_, d5ue9b2, d5ue9c_, d5ue9d2
        automated match to d1ep3b1
        complexed with cl, fad, fes, fmn, gol, oro
  18. 2281009Neisseria gonorrhoeae [TaxId:1351790] [324310] (2 PDB entries)
    1. Domain for 5thx:
    2. Domains for 5tr9:
      1. 2282789Domain d5tr9b1: 5tr9 B:14-114 [326090]
        Other proteins in same PDB: d5tr9a2, d5tr9b2
        automated match to d3fpka1
        complexed with cl, edo, fad, mg, na
      2. 2282871Domain d5tr9a1: 5tr9 A:14-114 [326172]
        Other proteins in same PDB: d5tr9a2, d5tr9b2
        automated match to d3fpka1
        complexed with cl, edo, fad, mg, na
  19. 2285442Neisseria gonorrhoeae [TaxId:521006] [328743] (1 PDB entry)
  20. 2285523Arabidopsis thaliana [TaxId:3702] [328824] (1 PDB entry)

More info for Protein automated matches from b.43.4.0: automated matches

Timeline for Protein automated matches from b.43.4.0: automated matches: