SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2054165Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
    barrel, closed; n=6, S=10; greek-key
  4. 2054655Superfamily b.43.4: Riboflavin synthase domain-like [63380] (4 families) (S)
  5. 2054836Family b.43.4.0: automated matches [227162] (1 protein)
    not a true family
  6. 2054837Protein automated matches [226870] (20 species)
    not a true protein

Species:

  1. 2054838Anabaena sp. [TaxId:1168] [226792] (1 PDB entry)
  2. 2054840Bacillus megaterium [TaxId:1404] [226322] (2 PDB entries)
    1. Domains for 4dqk:
      1. 2054843Domain d4dqka1: 4dqk A:659-887 [219936]
        Other proteins in same PDB: d4dqka2, d4dqkb2
        automated match to d1tlla1
        complexed with fad, pg4, so4
      2. 2054844Domain d4dqkb1: 4dqk B:660-887 [219938]
        Other proteins in same PDB: d4dqka2, d4dqkb2
        automated match to d1tlla1
        complexed with fad, pg4, so4
    2. Domains for 4dql:
      1. 2054841Domain d4dqla1: 4dql A:661-887 [219940]
        Other proteins in same PDB: d4dqla2, d4dqlb2
        automated match to d1tlla1
        complexed with 1pe, fad, nap, pg4, so4
      2. 2054842Domain d4dqlb1: 4dql B:658-887 [219942]
        Other proteins in same PDB: d4dqla2, d4dqlb2
        automated match to d1tlla1
        complexed with 1pe, fad, nap, pg4, so4
  3. 2054845Brucella abortus [TaxId:235] [228298] (4 PDB entries)
    1. Domains for 4e0f:
      1. 2054864Domain d4e0fa1: 4e0f A:1-96 [228299]
        Other proteins in same PDB: d4e0fb3
        automated match to d1kzla1
        complexed with rbf
      2. 2054865Domain d4e0fa2: 4e0f A:97-200 [228300]
        Other proteins in same PDB: d4e0fb3
        automated match to d1kzla2
        complexed with rbf
      3. 2054866Domain d4e0fb1: 4e0f B:1-96 [234347]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa1
        complexed with rbf
      4. 2054867Domain d4e0fb2: 4e0f B:97-202 [234348]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa2
        complexed with rbf
      5. 2054868Domain d4e0fc1: 4e0f C:1-96 [234349]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa1
        complexed with rbf
      6. 2054869Domain d4e0fc2: 4e0f C:97-202 [234350]
        Other proteins in same PDB: d4e0fb3
        automated match to d4e0fa2
        complexed with rbf
    2. Domains for 4fxu:
      1. 2054858Domain d4fxua1: 4fxu A:1-96 [237583]
        automated match to d4e0fa1
      2. 2054859Domain d4fxua2: 4fxu A:97-200 [237608]
        automated match to d4e0fa2
      3. 2054860Domain d4fxub1: 4fxu B:1-96 [237581]
        automated match to d4e0fb1
      4. 2054861Domain d4fxub2: 4fxu B:97-201 [237609]
        automated match to d4e0fb2
      5. 2054862Domain d4fxuc1: 4fxu C:1-96 [237580]
        automated match to d4e0fa1
      6. 2054863Domain d4fxuc2: 4fxu C:97-197 [237610]
        automated match to d4e0fa2
    3. Domains for 4g6i:
      1. 2054852Domain d4g6ia1: 4g6i A:1-96 [237579]
        automated match to d4e0fa1
        complexed with rs3
      2. 2054853Domain d4g6ia2: 4g6i A:97-200 [237602]
        automated match to d4e0fa2
        complexed with rs3
      3. 2054854Domain d4g6ib1: 4g6i B:1-96 [237582]
        automated match to d4e0fb1
        complexed with rs3
      4. 2054855Domain d4g6ib2: 4g6i B:97-201 [237605]
        automated match to d4e0fb2
        complexed with rs3
      5. 2054856Domain d4g6ic1: 4g6i C:1-96 [237578]
        automated match to d4e0fa1
        complexed with rs3
      6. 2054857Domain d4g6ic2: 4g6i C:97-199 [237603]
        automated match to d4e0fa2
        complexed with rs3
    4. Domains for 4gqn:
      1. 2054846Domain d4gqna1: 4gqn A:1-96 [237586]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa1
        complexed with ini
      2. 2054847Domain d4gqna2: 4gqn A:97-200 [237611]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa2
        complexed with ini
      3. 2054848Domain d4gqnb1: 4gqn B:1-96 [237585]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fb1
        complexed with ini
      4. 2054849Domain d4gqnb2: 4gqn B:97-202 [237607]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fb2
        complexed with ini
      5. 2054850Domain d4gqnc1: 4gqn C:1-96 [237584]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa1
        complexed with ini
      6. 2054851Domain d4gqnc2: 4gqn C:97-200 [237606]
        Other proteins in same PDB: d4gqnb3
        automated match to d4e0fa2
        complexed with ini
  4. 2054870Burkholderia thailandensis [TaxId:271848] [226396] (2 PDB entries)
    1. Domains for 4f7d:
      1. 2054873Domain d4f7da1: 4f7d A:17-115 [221056]
        Other proteins in same PDB: d4f7da2, d4f7db2
        automated match to d1a8pa1
      2. 2054874Domain d4f7db1: 4f7d B:16-115 [221058]
        Other proteins in same PDB: d4f7da2, d4f7db2
        automated match to d1a8pa1
    2. Domains for 4fk8:
      1. 2054871Domain d4fk8a1: 4fk8 A:18-115 [221244]
        Other proteins in same PDB: d4fk8a2, d4fk8b2
        automated match to d1a8pa1
        complexed with fad
      2. 2054872Domain d4fk8b1: 4fk8 B:17-115 [221246]
        Other proteins in same PDB: d4fk8a2, d4fk8b2
        automated match to d1a8pa1
        complexed with fad
  5. 2054875Escherichia coli [TaxId:562] [226084] (1 PDB entry)
  6. 2054878Leptospira interrogans [TaxId:173] [225433] (2 PDB entries)
    1. Domains for 2rc5:
      1. 2054879Domain d2rc5a1: 2rc5 A:7-158 [206042]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
      2. 2054880Domain d2rc5b1: 2rc5 B:8-158 [206044]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
      3. 2054881Domain d2rc5c1: 2rc5 C:8-158 [206046]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
      4. 2054882Domain d2rc5d1: 2rc5 D:8-158 [206048]
        Other proteins in same PDB: d2rc5a2, d2rc5b2, d2rc5c2, d2rc5d2
        automated match to d1qufa1
        complexed with fad, so4, zn
    2. Domains for 2rc6:
      1. 2054883Domain d2rc6a1: 2rc6 A:7-158 [206050]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
      2. 2054884Domain d2rc6b1: 2rc6 B:7-158 [206052]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
      3. 2054885Domain d2rc6c1: 2rc6 C:7-158 [206054]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
      4. 2054886Domain d2rc6d1: 2rc6 D:7-158 [206056]
        Other proteins in same PDB: d2rc6a2, d2rc6b2, d2rc6c2, d2rc6d2
        automated match to d1qufa1
        complexed with fad, nap, so4, zn
  7. 2054887Maize (Zea mays) [TaxId:4577] [226539] (7 PDB entries)
    1. Domain for 3lo8:
    2. Domain for 3lvb:
    3. Domains for 3vo1:
      1. 2054891Domain d3vo1a1: 3vo1 A:20-154 [217945]
        Other proteins in same PDB: d3vo1a2, d3vo1b2
        automated match to d1frna1
        complexed with fad
      2. 2054892Domain d3vo1b1: 3vo1 B:20-154 [217947]
        Other proteins in same PDB: d3vo1a2, d3vo1b2
        automated match to d1frna1
        complexed with fad
    4. Domain for 3vo2:
    5. Domains for 3w5u:
      1. 2054893Domain d3w5ua1: 3w5u A:19-154 [201272]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
      2. 2054894Domain d3w5uc1: 3w5u C:19-154 [201274]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
      3. 2054895Domain d3w5ue1: 3w5u E:19-154 [201277]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
      4. 2054896Domain d3w5ug1: 3w5u G:19-154 [201280]
        Other proteins in same PDB: d3w5ua2, d3w5ub_, d3w5uc2, d3w5ud_, d3w5ue2, d3w5uf_, d3w5ug2, d3w5uh_
        automated match to d1frna1
        complexed with fad, fes
    6. Domain for 5h59:
    7. Domains for 5h5j:
      1. 2285883Domain d5h5ja1: 5h5j A:9-157 [329184]
        Other proteins in same PDB: d5h5ja2, d5h5jb_, d5h5jc2
        automated match to d3lvba1
        complexed with fad, fes
      2. 2285898Domain d5h5jc1: 5h5j C:9-157 [329199]
        Other proteins in same PDB: d5h5ja2, d5h5jb_, d5h5jc2
        automated match to d3lvba1
        complexed with fad, fes
  8. 2054897Nostoc sp. [TaxId:1168] [225652] (2 PDB entries)
    1. Domain for 2vyq:
    2. Domain for 2vzl:
  9. 2054900Pea (Pisum sativum) [TaxId:3888] [226803] (3 PDB entries)
    1. Domains for 2xnc:
      1. 2054901Domain d2xnca1: 2xnc A:14-139 [207279]
        Other proteins in same PDB: d2xnca2, d2xnca3, d2xncb2, d2xncb3
        automated match to d1frna1
        complexed with fad, so4
      2. 2054902Domain d2xncb1: 2xnc B:13-139 [207281]
        Other proteins in same PDB: d2xnca2, d2xnca3, d2xncb2, d2xncb3
        automated match to d1frna1
        complexed with fad, so4
    2. Domains for 4af6:
      1. 2054905Domain d4af6a1: 4af6 A:13-148 [218820]
        Other proteins in same PDB: d4af6a2, d4af6b2
        automated match to d1frna1
        complexed with fad; mutant
      2. 2054906Domain d4af6b1: 4af6 B:13-148 [218822]
        Other proteins in same PDB: d4af6a2, d4af6b2
        automated match to d1frna1
        complexed with fad; mutant
    3. Domains for 4af7:
      1. 2054903Domain d4af7a1: 4af7 A:13-148 [218824]
        Other proteins in same PDB: d4af7a2, d4af7b2
        automated match to d1frna1
        complexed with fad; mutant
      2. 2054904Domain d4af7b1: 4af7 B:14-148 [218826]
        Other proteins in same PDB: d4af7a2, d4af7b2
        automated match to d1frna1
        complexed with fad; mutant
  10. 2054907Ralstonia eutropha [TaxId:381666] [256010] (3 PDB entries)
    1. Domain for 3ozu:
    2. Domains for 3ozv:
      1. 2054911Domain d3ozva2: 3ozv A:151-261 [248383]
        Other proteins in same PDB: d3ozva1, d3ozva3, d3ozvb1, d3ozvb3
        automated match to d1cqxa2
        complexed with dgg, ecn, fad, hem, po4
      2. 2054912Domain d3ozvb2: 3ozv B:151-261 [248386]
        Other proteins in same PDB: d3ozva1, d3ozva3, d3ozvb1, d3ozvb3
        automated match to d1cqxa2
        complexed with dgg, ecn, fad, hem, po4
    3. Domains for 3ozw:
      1. 2054909Domain d3ozwa2: 3ozw A:151-261 [248389]
        Other proteins in same PDB: d3ozwa1, d3ozwa3, d3ozwb1, d3ozwb3
        automated match to d1cqxa2
        complexed with dgg, fad, hem, kkk, po4
      2. 2054910Domain d3ozwb2: 3ozw B:151-261 [248392]
        Other proteins in same PDB: d3ozwa1, d3ozwa3, d3ozwb1, d3ozwb3
        automated match to d1cqxa2
        complexed with dgg, fad, hem, kkk, po4
  11. 2054913Rhodobacter capsulatus [TaxId:1061] [225019] (7 PDB entries)
    1. Domain for 2bgi:
    2. Domains for 2bgj:
      1. 2054921Domain d2bgja1: 2bgj A:13-113 [203596]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
      2. 2054922Domain d2bgjb1: 2bgj B:16-113 [203598]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
      3. 2054923Domain d2bgjc1: 2bgj C:16-113 [203600]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
      4. 2054924Domain d2bgjd1: 2bgj D:16-113 [203602]
        Other proteins in same PDB: d2bgja2, d2bgjb2, d2bgjc2, d2bgjd2
        automated match to d1a8pa1
        complexed with fad
    3. Domain for 2vnh:
    4. Domain for 2vni:
    5. Domain for 2vnj:
    6. Domains for 2vnk:
      1. 2054917Domain d2vnka1: 2vnk A:16-113 [206389]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
      2. 2054918Domain d2vnkb1: 2vnk B:16-113 [206391]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
      3. 2054919Domain d2vnkc1: 2vnk C:16-113 [206393]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
      4. 2054920Domain d2vnkd1: 2vnk D:16-113 [206395]
        Other proteins in same PDB: d2vnka2, d2vnkb2, d2vnkc2, d2vnkd2
        automated match to d1a8pa1
        complexed with fad, nap
    7. Domains for 4k1x:
      1. 2054915Domain d4k1xa1: 4k1x A:16-113 [228949]
        Other proteins in same PDB: d4k1xa2, d4k1xb2
        automated match to d2vnha1
        complexed with fad, so4; mutant
      2. 2054916Domain d4k1xb1: 4k1x B:16-113 [235077]
        Other proteins in same PDB: d4k1xa2, d4k1xb2
        automated match to d4k1xa1
        complexed with fad, so4; mutant
  12. 2054928Salmonella typhimurium [TaxId:99287] [225604] (1 PDB entry)
  13. 2054931Slime mold (Physarum polycephalum) [TaxId:5791] [225253] (1 PDB entry)
  14. 2054934Synechococcus sp. [TaxId:32049] [225027] (1 PDB entry)
  15. 2054937Vibrio cholerae [TaxId:243277] [226357] (1 PDB entry)
  16. 2054940Xanthomonas axonopodis [TaxId:190486] [234119] (1 PDB entry)
  17. 2277307Lactococcus lactis [TaxId:1360] [320608] (1 PDB entry)
  18. 2281009Neisseria gonorrhoeae [TaxId:1351790] [324310] (2 PDB entries)
    1. Domain for 5thx:
    2. Domains for 5tr9:
      1. 2282789Domain d5tr9b1: 5tr9 B:14-114 [326090]
        Other proteins in same PDB: d5tr9a2, d5tr9b2
        automated match to d3fpka1
        complexed with cl, edo, fad, mg, na
      2. 2282871Domain d5tr9a1: 5tr9 A:14-114 [326172]
        Other proteins in same PDB: d5tr9a2, d5tr9b2
        automated match to d3fpka1
        complexed with cl, edo, fad, mg, na
  19. 2285442Neisseria gonorrhoeae [TaxId:521006] [328743] (1 PDB entry)
  20. 2285523Arabidopsis thaliana [TaxId:3702] [328824] (1 PDB entry)

More info for Protein automated matches from b.43.4.0: automated matches

Timeline for Protein automated matches from b.43.4.0: automated matches: