Species:

1. Enterococcus faecalis [TaxId:226185] [226590] (9 PDB entries)

   1. Domain for 4gee:

      • Domain d4geea_: 4gee A: [221875] automated match to d1kzna_ protein/DNA complex; complexed with 0wt, gol

   2. Domain for 4gfn:

      • Domain d4gfna_: 4gfn A: [221886] automated match to d1kzna_ protein/DNA complex; complexed with gol, suy

   3. Domain for 4ggl:

      • Domain d4ggla_: 4ggl A: [221894] automated match to d1kzna_ protein/DNA complex; complexed with cjc, gol

   4. Domain for 4hxw:

      • Domain d4hxwa_: 4hxw A: [222783] automated match to d1kzna_ complexed with 1a0, tbu

   5. Domains for 4hz5:

      1. Domain d4hz5a_: 4hz5 A: [222804] automated match to d1kzna_ complexed with 19y

      2. Domain d4hz5b_: 4hz5 B: [222805] automated match to d1kzna_ complexed with 19y

      3. Domain d4hz5c_: 4hz5 C: [222806] automated match to d1kzna_ complexed with 19y

      4. Domain d4hz5d_: 4hz5 D: [222807] automated match to d1kzna_ complexed with 19y

      5. Domain d4hz5e_: 4hz5 E: [222808] automated match to d1kzna_ complexed with 19y

      6. Domain d4hz5f_: 4hz5 F: [222809] automated match to d1kzna_ complexed with 19y

      7. Domain d4hz5g_: 4hz5 G: [222810] automated match to d1kzna_ complexed with 19y

      8. Domain d4hz5h_: 4hz5 H: [222811] automated match to d1kzna_ complexed with 19y

      9. Domain d4hz5j_: 4hz5 J: [222812] automated match to d1kzna_ complexed with 19y

   6. Domain for 4k4o:

      • Domain d4k4oa_: 4k4o A: [236029] automated match to d4geea_ protein/DNA complex; complexed with doo, tbu

   7. Domain for 4ksg:

      • Domain d4ksga_: 4ksg A: [236035] automated match to d4geea_ protein/DNA complex; complexed with 920, tbu

   8. Domain for 4ksh:

      • Domain d4ksha_: 4ksh A: [236039] automated match to d4geea_ protein/DNA complex; complexed with gol, htt

   9. Domain for 4ktn:

      • Domain d4ktna_: 4ktn A: [236040] automated match to d4geea_ protein/DNA complex; complexed with mju

2. Escherichia coli K-12 [TaxId:83333] [225819] (2 PDB entries)

   1. Domains for 3fv5:

      1. Domain d3fv5a_: 3fv5 A: [210195] automated match to d1aj6a_ complexed with 1eu

      2. Domain d3fv5b_: 3fv5 B: [210196] automated match to d1aj6a_ complexed with 1eu

   2. Domains for 4hz0:

      1. Domain d4hz0a_: 4hz0 A: [222802] automated match to d1kzna_ complexed with 1av, mg

      2. Domain d4hz0b_: 4hz0 B: [222803] automated match to d1kzna_ complexed with 1av, mg

3. Escherichia coli [TaxId:562] [225182] (4 PDB entries)

   1. Domain for 2ior:

      • Domain d2iora_: 2ior A: [204834] automated match to d2cgfa_ complexed with adp, hez, mg

   2. Domain for 4prv:

      • Domain d4prva1: 4prv A:5-220 [267210] Other proteins in same PDB: d4prva2 automated match to d3cwvb1 complexed with adp, mg

   3. Domain for 4prx:

      • Domain d4prxa1: 4prx A:4-220 [267212] Other proteins in same PDB: d4prxa2 automated match to d3cwvb1 complexed with adp, gol, mg, po4

   4. Domain for 4pu9:

      • Domain d4pu9a1: 4pu9 A:4-220 [267220] Other proteins in same PDB: d4pu9a2 automated match to d3cwvb1 complexed with adp, bef, mg

4. Escherichia coli [TaxId:83333] [271298] (4 PDB entries)

   1. Domain for 4wub:

      • Domain d4wuba1: 4wub A:4-220 [271302] Other proteins in same PDB: d4wuba2 automated match to d4prxa1 complexed with anp, cl, k, mg, na

   2. Domain for 4wuc:

      • Domain d4wuca1: 4wuc A:4-220 [271306] Other proteins in same PDB: d4wuca2 automated match to d4prxa1 complexed with anp, cl, mg, na

   3. Domain for 4wud:

      • Domain d4wuda1: 4wud A:4-220 [271299] Other proteins in same PDB: d4wuda2 automated match to d4prxa1 complexed with anp, cl, mg, na

   4. Domain for 4xtj:

      • Domain d4xtja1: 4xtj A:4-220 [271335] Other proteins in same PDB: d4xtja2 automated match to d4prxa1 complexed with anp, cl, k, mg, na

5. Francisella tularensis [TaxId:376619] [226591] (4 PDB entries)

   1. Domains for 4hxz:

      1. Domain d4hxza1: 4hxz A:8-215 [222784] Other proteins in same PDB: d4hxza2 automated match to d1s16a2 complexed with 19y

      2. Domain d4hxzb1: 4hxz B:7-215 [222786] Other proteins in same PDB: d4hxza2 automated match to d1s16a2 complexed with 19y

   2. Domains for 4hy1:

      1. Domain d4hy1a1: 4hy1 A:7-215 [222787] Other proteins in same PDB: d4hy1a2 automated match to d1s16a2 complexed with 19x

      2. Domain d4hy1b1: 4hy1 B:8-215 [222789] Other proteins in same PDB: d4hy1a2 automated match to d1s16a2 complexed with 19x

   3. Domains for 4hym:

      1. Domain d4hyma1: 4hym A:7-215 [222795] Other proteins in same PDB: d4hyma2 automated match to d1s16a2 complexed with cjc

      2. Domain d4hymb1: 4hym B:8-215 [222797] Other proteins in same PDB: d4hyma2 automated match to d1s16a2 complexed with cjc

   4. Domains for 4kqv:

      1. Domain d4kqva1: 4kqv A:7-215 [236036] Other proteins in same PDB: d4kqva2 automated match to d4hxza1 protein/DNA complex; complexed with doo, iod

      2. Domain d4kqvb_: 4kqv B: [236038] Other proteins in same PDB: d4kqva2 automated match to d4hxza1 protein/DNA complex; complexed with doo, iod

6. Human (Homo sapiens) [TaxId:9606] [225008] (10 PDB entries)

   1. Domains for 1zxm:

      1. Domain d1zxma1: 1zxm A:29-265 [203366] Other proteins in same PDB: d1zxma2, d1zxmb2 automated match to d1pvgb2 complexed with anp, mg

      2. Domain d1zxmb1: 1zxm B:29-265 [203368] Other proteins in same PDB: d1zxma2, d1zxmb2 automated match to d1pvgb2 complexed with anp, mg

   2. Domains for 1zxn:

      1. Domain d1zxna1: 1zxn A:29-265 [230471] Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2 automated match to d1zxmb1 complexed with adp, gol, mg, so4

      2. Domain d1zxnb1: 1zxn B:29-265 [230473] Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2 automated match to d1zxmb1 complexed with adp, gol, mg, so4

      3. Domain d1zxnc1: 1zxn C:29-265 [230475] Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2 automated match to d1zxmb1 complexed with adp, gol, mg, so4

      4. Domain d1zxnd1: 1zxn D:29-265 [230477] Other proteins in same PDB: d1zxna2, d1zxnb2, d1zxnc2, d1zxnd2 automated match to d1zxmb1 complexed with adp, gol, mg, so4

   3. Domains for 2e0a:

      1. Domain d2e0aa2: 2e0a A:188-386 [230684] Other proteins in same PDB: d2e0aa1, d2e0ab1 automated match to d1jm6a2 complexed with anp, mg

      2. Domain d2e0ab2: 2e0a B:188-386 [230682] Other proteins in same PDB: d2e0aa1, d2e0ab1 automated match to d1jm6a2 complexed with anp, mg

   4. Domain for 2q8f:

      • Domain d2q8fa2: 2q8f A:215-423 [243525] Other proteins in same PDB: d2q8fa1 automated match to d2bu8a2 complexed with k

   5. Domain for 2q8g:

      • Domain d2q8ga2: 2q8g A:214-423 [243527] Other proteins in same PDB: d2q8ga1 automated match to d2bu8a2 complexed with azx, k

   6. Domain for 2q8h:

      • Domain d2q8ha2: 2q8h A:215-423 [243529] Other proteins in same PDB: d2q8ha1 automated match to d2bu8a2 complexed with k, tf4

   7. Domains for 2zdx:

      1. Domain d2zdxa2: 2zdx A:188-385 [244909] Other proteins in same PDB: d2zdxa1, d2zdxb1 automated match to d2e0ab2 complexed with p4a

      2. Domain d2zdxb2: 2zdx B:188-396 [244911] Other proteins in same PDB: d2zdxa1, d2zdxb1 automated match to d2e0ab2 complexed with p4a

   8. Domains for 2zdy:

      1. Domain d2zdya2: 2zdy A:188-386 [244913] Other proteins in same PDB: d2zdya1, d2zdyb1 automated match to d2e0ab2 complexed with adp, epe, mg

      2. Domain d2zdyb2: 2zdy B:188-398 [244915] Other proteins in same PDB: d2zdya1, d2zdyb1 automated match to d2e0ab2 complexed with adp, epe, mg

   9. Domains for 2zkj:

      1. Domain d2zkja2: 2zkj A:181-397 [244950] Other proteins in same PDB: d2zkja1, d2zkjb1 automated match to d2bu8a2 complexed with adp, mg, po4

      2. Domain d2zkjb2: 2zkj B:181-395 [262243] Other proteins in same PDB: d2zkja1, d2zkjb1 automated match to d2zkja2 complexed with adp, mg, po4

   10. Domains for 3d2r:

       1. Domain d3d2ra2: 3d2r A:181-397 [245605] Other proteins in same PDB: d3d2ra1, d3d2rb1 automated match to d2bu8a2 complexed with adp, gol, mg

       2. Domain d3d2rb2: 3d2r B:181-397 [245607] Other proteins in same PDB: d3d2ra1, d3d2rb1 automated match to d2bu8a2 complexed with adp, gol, mg

7. Mycobacterium smegmatis [TaxId:1772] [228578] (1 PDB entry)

   • Domains for 4bae:

     1. Domain d4baea_: 4bae A: [234131] automated match to d4baed_ complexed with ca, rwx, so4

     2. Domain d4baeb_: 4bae B: [234132] automated match to d4baed_ complexed with ca, rwx, so4

     3. Domain d4baec_: 4bae C: [234133] automated match to d4baed_ complexed with ca, rwx, so4

     4. Domain d4baed_: 4bae D: [228579] automated match to d4emva_ complexed with ca, rwx, so4

8. Myxococcus xanthus [TaxId:246197] [225452] (1 PDB entry)

   • Domains for 3cwv:

     1. Domain d3cwva1: 3cwv A:8-206 [208972] Other proteins in same PDB: d3cwva2, d3cwvb2 automated match to d1ei1a2

     2. Domain d3cwvb1: 3cwv B:10-206 [208974] Other proteins in same PDB: d3cwva2, d3cwvb2 automated match to d1ei1a2

9. Staphylococcus aureus [TaxId:1280] [232247] (14 PDB entries)

   1. Domains for 3g75:

      1. Domain d3g75a_: 3g75 A: [232249] automated match to d4gfna_ complexed with b48

      2. Domain d3g75b_: 3g75 B: [232248] automated match to d4gfna_ complexed with b48

   2. Domains for 3g7b:

      1. Domain d3g7ba_: 3g7b A: [246254] automated match to d3g75b_ complexed with b47

      2. Domain d3g7bb_: 3g7b B: [246255] automated match to d3g75b_ complexed with b47

   3. Domains for 3ttz:

      1. Domain d3ttza_: 3ttz A: [233741] automated match to d4gfna_ complexed with 07n, mg

      2. Domain d3ttzb_: 3ttz B: [239831] automated match to d3ttza_ complexed with 07n, mg

   4. Domains for 3u2d:

      1. Domain d3u2da_: 3u2d A: [250068] automated match to d3ttza_ complexed with 08b, mg

      2. Domain d3u2db_: 3u2d B: [250069] automated match to d3ttza_ complexed with 08b, mg

   5. Domains for 3u2k:

      1. Domain d3u2ka_: 3u2k A: [250070] automated match to d3ttza_ complexed with 087, mg

      2. Domain d3u2kb_: 3u2k B: [250071] automated match to d3ttza_ complexed with 087, mg

   6. Domain for 4p8o:

      • Domain d4p8ob_: 4p8o B: [261238] automated match to d3ttzb_ complexed with 883

   7. Domains for 4urm:

      1. Domain d4urma_: 4urm A: [260090] automated match to d4k4oa_ complexed with xam

      2. Domain d4urmb_: 4urm B: [264000] automated match to d4k4oa_ complexed with xam

      3. Domain d4urmc_: 4urm C: [264001] automated match to d4k4oa_ complexed with xam

      4. Domain d4urmd_: 4urm D: [264002] automated match to d4k4oa_ complexed with xam

   8. Domains for 4urn:

      1. Domain d4urna_: 4urn A: [260087] automated match to d4hymb1 complexed with nov

      2. Domain d4urnb_: 4urn B: [258574] automated match to d4hymb1 complexed with nov

      3. Domain d4urnc_: 4urn C: [264003] automated match to d4hymb1 complexed with nov

   9. Domains for 4uro:

      1. Domain d4uroa_: 4uro A: [258577] automated match to d4k4oa_ complexed with nov

      2. Domain d4urob_: 4uro B: [260089] automated match to d4k4oa_ complexed with nov

      3. Domain d4uroc_: 4uro C: [258579] automated match to d4k4oa_ complexed with nov

      4. Domain d4urod_: 4uro D: [260088] automated match to d4k4oa_ complexed with nov

   10. Domains for 5d6p:

       1. Domain d5d6pa_: 5d6p A: [279583] automated match to d3u2ka_ protein/DNA complex; complexed with 57u, gol, mpd

       2. Domain d5d6pb_: 5d6p B: [279582] automated match to d3u2ka_ protein/DNA complex; complexed with 57u, gol, mpd

   11. Domains for 5d6q:

       1. Domain d5d6qa_: 5d6q A: [279578] automated match to d3u2ka_ protein/DNA complex; complexed with 57v, mg, mpd

       2. Domain d5d6qb_: 5d6q B: [279581] automated match to d3u2ka_ protein/DNA complex; complexed with 57v, mg, mpd

   12. Domains for 5d7c:

       1. Domain d5d7ca_: 5d7c A: [279584] automated match to d3u2ka_ protein/DNA complex; complexed with 57w, mg, mpd

       2. Domain d5d7cb_: 5d7c B: [279585] automated match to d3u2ka_ protein/DNA complex; complexed with 57w, mg, mpd

   13. Domains for 5d7d:

       1. Domain d5d7da_: 5d7d A: [279259] automated match to d3u2ka_ protein/DNA complex; complexed with 57x, cl, mg, mpd

       2. Domain d5d7db_: 5d7d B: [279260] automated match to d3u2ka_ protein/DNA complex; complexed with 57x, cl, mg, mpd

   14. Domains for 5d7r:

       1. Domain d5d7ra_: 5d7r A: [279442] automated match to d3u2ka_ protein/DNA complex; complexed with 57y, cl, mg, mpd

       2. Domain d5d7rb_: 5d7r B: [279441] automated match to d3u2ka_ protein/DNA complex; complexed with 57y, cl, mg, mpd

10. Staphylococcus aureus [TaxId:703339] [260729] (1 PDB entry)

    • Domain for 4p8o:

      • Domain d4p8oa_: 4p8o A: [260730] automated match to d3ttzb_ complexed with 883

11. Streptococcus pneumoniae [TaxId:171101] [273854] (2 PDB entries)

    1. Domain for 5boc:

       • Domain d5boca_: 5boc A: [273857] automated match to d4hymb1 complexed with tsj

    2. Domain for 5bod:

       • Domain d5boda_: 5bod A: [273856] automated match to d4hymb1 complexed with ttj

12. Streptococcus pneumoniae [TaxId:760835] [226426] (7 PDB entries)

    1. Domain for 4em7:

       • Domain d4em7a_: 4em7 A: [220646] automated match to d1aj6a_ complexed with 0ra

    2. Domain for 4emv:

       • Domain d4emva_: 4emv A: [220665] automated match to d1aj6a_ complexed with 0r9

    3. Domain for 4lp0:

       • Domain d4lp0a_: 4lp0 A: [228969] automated match to d4em7a_ complexed with 1ym

    4. Domain for 4lpb:

       • Domain d4lpba_: 4lpb A: [228705] automated match to d4em7a_ complexed with 1yp

    5. Domain for 4mb9:

       • Domain d4mb9a_: 4mb9 A: [228391] automated match to d4em7a_ complexed with 28f, so4

    6. Domain for 4mbc:

       • Domain d4mbca_: 4mbc A: [228390] automated match to d4em7a_ complexed with 28g

    7. Domain for 4mot:

       • Domain d4mota_: 4mot A: [229497] automated match to d4em7a_ complexed with 2b7

13. Xanthomonas oryzae [TaxId:291331] [226075] (2 PDB entries)

    1. Domain for 3lnu:

       • Domain d3lnua1: 3lnu A:59-260 [212976] Other proteins in same PDB: d3lnua2 automated match to d1s16a2

    2. Domain for 3lps:

       • Domain d3lpsa1: 3lps A:59-260 [212987] Other proteins in same PDB: d3lpsa2 automated match to d1s16a2 complexed with nov

More info for Protein automated matches from d.122.1.0: automated matches

Timeline for Protein automated matches from d.122.1.0: automated matches:

• Protein automated matches from d.122.1.0: automated matches first appeared in SCOPe 2.03
  
• Protein automated matches from d.122.1.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from d.122.1.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from d.122.1.0: automated matches appears in the current release, SCOPe 2.08