Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1411453Fold d.44: Fe,Mn superoxide dismutase (SOD), C-terminal domain [54718] (1 superfamily)
    alpha-beta(2)-alpha-beta-alpha(2); 3 strands of antiparallel sheet: 213
  4. 1411454Superfamily d.44.1: Fe,Mn superoxide dismutase (SOD), C-terminal domain [54719] (2 families) (S)
    automatically mapped to Pfam PF02777
  5. 1411726Family d.44.1.0: automated matches [227155] (1 protein)
    not a true family
  6. 1411727Protein automated matches [226860] (25 species)
    not a true protein

Species:

  1. 1411728Aliivibrio salmonicida [TaxId:316275] [225613] (1 PDB entry)
  2. 1411731Anaplasma phagocytophilum [TaxId:212042] [225758] (1 PDB entry)
  3. 1411736Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [224994] (2 PDB entries)
    1. Domains for 1xre:
      1. 1411737Domain d1xrea2: 1xre A:93-203 [203156]
        Other proteins in same PDB: d1xrea1, d1xreb1
        automated match to d1jr9a2
        complexed with mn
      2. 1411738Domain d1xreb2: 1xre B:93-203 [203158]
        Other proteins in same PDB: d1xrea1, d1xreb1
        automated match to d1jr9a2
        complexed with mn
    2. Domains for 1xuq:
      1. 1411739Domain d1xuqa2: 1xuq A:93-202 [203170]
        Other proteins in same PDB: d1xuqa1, d1xuqb1
        automated match to d1unfx2
        complexed with mn
      2. 1411740Domain d1xuqb2: 1xuq B:93-202 [203172]
        Other proteins in same PDB: d1xuqa1, d1xuqb1
        automated match to d1unfx2
        complexed with mn
  4. 1411741Babesia bovis [TaxId:5865] [226663] (1 PDB entry)
  5. 1411744Bacillus subtilis [TaxId:1423] [225414] (1 PDB entry)
  6. 1411753Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226081] (2 PDB entries)
    1. Domains for 3lsu:
      1. 1411754Domain d3lsua2: 3lsu A:91-206 [213012]
        Other proteins in same PDB: d3lsua1, d3lsub1, d3lsuc1, d3lsud1
        automated match to d1kkca2
        complexed with gol, mn, na
      2. 1411755Domain d3lsub2: 3lsu B:91-207 [213014]
        Other proteins in same PDB: d3lsua1, d3lsub1, d3lsuc1, d3lsud1
        automated match to d1kkca2
        complexed with gol, mn, na
      3. 1411756Domain d3lsuc2: 3lsu C:91-206 [213016]
        Other proteins in same PDB: d3lsua1, d3lsub1, d3lsuc1, d3lsud1
        automated match to d1kkca2
        complexed with gol, mn, na
      4. 1411757Domain d3lsud2: 3lsu D:91-207 [213018]
        Other proteins in same PDB: d3lsua1, d3lsub1, d3lsuc1, d3lsud1
        automated match to d1kkca2
        complexed with gol, mn, na
    2. Domains for 4e4e:
      1. 1411758Domain d4e4ea2: 4e4e A:91-206 [220281]
        Other proteins in same PDB: d4e4ea1, d4e4eb1, d4e4ec1, d4e4ed1
        automated match to d1kkca2
        complexed with mn; mutant
      2. 1411759Domain d4e4eb2: 4e4e B:91-207 [220283]
        Other proteins in same PDB: d4e4ea1, d4e4eb1, d4e4ec1, d4e4ed1
        automated match to d1kkca2
        complexed with mn; mutant
      3. 1411760Domain d4e4ec2: 4e4e C:91-205 [220285]
        Other proteins in same PDB: d4e4ea1, d4e4eb1, d4e4ec1, d4e4ed1
        automated match to d1kkca2
        complexed with mn; mutant
      4. 1411761Domain d4e4ed2: 4e4e D:91-203 [220287]
        Other proteins in same PDB: d4e4ea1, d4e4eb1, d4e4ec1, d4e4ed1
        automated match to d1kkca2
        complexed with mn; mutant
  7. 1411762Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226252] (2 PDB entries)
    1. Domain for 3rn4:
    2. Domains for 4f6e:
      1. 1411763Domain d4f6ea2: 4f6e A:91-207 [221045]
        Other proteins in same PDB: d4f6ea1, d4f6eb1, d4f6ec1, d4f6ed1
        automated match to d1kkca2
        complexed with gol, mly, mn, trs; mutant
      2. 1411764Domain d4f6eb2: 4f6e B:91-205 [221047]
        Other proteins in same PDB: d4f6ea1, d4f6eb1, d4f6ec1, d4f6ed1
        automated match to d1kkca2
        complexed with gol, mly, mn, trs; mutant
      3. 1411765Domain d4f6ec2: 4f6e C:91-207 [221049]
        Other proteins in same PDB: d4f6ea1, d4f6eb1, d4f6ec1, d4f6ed1
        automated match to d1kkca2
        complexed with gol, mly, mn, trs; mutant
      4. 1411766Domain d4f6ed2: 4f6e D:91-205 [221051]
        Other proteins in same PDB: d4f6ea1, d4f6eb1, d4f6ec1, d4f6ed1
        automated match to d1kkca2
        complexed with gol, mly, mn, trs; mutant
  8. 1411768Chaetomium thermophilum [TaxId:209285] [229770] (1 PDB entry)
  9. 1411773Clostridium difficile [TaxId:272563] [226453] (4 PDB entries)
    1. Domain for 3tjt:
    2. Domain for 4jyy:
    3. Domain for 4jz2:
    4. Domain for 4jzg:
  10. 1411778Coxiella burnetii [TaxId:777] [226207] (1 PDB entry)
  11. 1411781Francisella tularensis [TaxId:119856] [225666] (1 PDB entry)
  12. 1411784Helicobacter pylori [TaxId:210] [225465] (1 PDB entry)
  13. 1411787Leishmania major [TaxId:5664] [226381] (1 PDB entry)
  14. 1411800Malaria parasite (Plasmodium knowlesi) [TaxId:5850] [225015] (1 PDB entry)
  15. 1411803Nematode (Caenorhabditis elegans) [TaxId:6239] [225669] (2 PDB entries)
    1. Domains for 3dc5:
      1. 1411804Domain d3dc5a2: 3dc5 A:86-194 [209081]
        Other proteins in same PDB: d3dc5a1, d3dc5c1
        automated match to d1bsma2
        complexed with mli, mn
      2. 1411805Domain d3dc5c2: 3dc5 C:86-194 [209083]
        Other proteins in same PDB: d3dc5a1, d3dc5c1
        automated match to d1bsma2
        complexed with mli, mn
    2. Domains for 3dc6:
      1. 1411806Domain d3dc6a2: 3dc6 A:86-197 [209085]
        Other proteins in same PDB: d3dc6a1, d3dc6c1
        automated match to d1bsma2
        complexed with mn, so4
      2. 1411807Domain d3dc6c2: 3dc6 C:86-197 [209087]
        Other proteins in same PDB: d3dc6a1, d3dc6c1
        automated match to d1bsma2
        complexed with mn, so4
  16. 1411808Perkinsus marinus [TaxId:31276] [225087] (2 PDB entries)
    1. Domains for 2cw2:
      1. 1411809Domain d2cw2a2: 2cw2 A:90-201 [203835]
        Other proteins in same PDB: d2cw2a1, d2cw2b1
        automated match to d1unfx2
        complexed with fe
      2. 1411810Domain d2cw2b2: 2cw2 B:90-201 [203837]
        Other proteins in same PDB: d2cw2a1, d2cw2b1
        automated match to d1unfx2
        complexed with fe
    2. Domains for 2cw3:
      1. 1411811Domain d2cw3a2: 2cw3 A:91-203 [203839]
        Other proteins in same PDB: d2cw3a1, d2cw3b1
        automated match to d2nyba2
        complexed with fe
      2. 1411812Domain d2cw3b2: 2cw3 B:91-203 [203841]
        Other proteins in same PDB: d2cw3a1, d2cw3b1
        automated match to d2nyba2
        complexed with fe
  17. 1411813Plasmodium berghei [TaxId:5821] [224987] (1 PDB entry)
  18. 1411816Plasmodium falciparum [TaxId:137071] [225302] (1 PDB entry)
  19. 1411819Plasmodium falciparum [TaxId:36329] [225154] (1 PDB entry)
  20. 1411822Pseudoalteromonas haloplanktis [TaxId:228] [237182] (2 PDB entries)
    1. Domain for 4l2b:
    2. Domains for 4l2c:
      1. 1411823Domain d4l2ca2: 4l2c A:83-192 [237183]
        Other proteins in same PDB: d4l2ca1, d4l2cb1
        automated match to d2p4ka2
        complexed with fe, tre; mutant
      2. 1411824Domain d4l2cb2: 4l2c B:83-192 [237185]
        Other proteins in same PDB: d4l2ca1, d4l2cb1
        automated match to d2p4ka2
        complexed with fe, tre; mutant
  21. 1411826Pseudoalteromonas haloplanktis [TaxId:326442] [225960] (4 PDB entries)
    1. Domains for 3lio:
      1. 1411827Domain d3lioa2: 3lio A:83-192 [212902]
        Other proteins in same PDB: d3lioa1, d3liob1
        automated match to d2nyba2
        complexed with fe, tre
      2. 1411828Domain d3liob2: 3lio B:83-192 [212904]
        Other proteins in same PDB: d3lioa1, d3liob1
        automated match to d2nyba2
        complexed with fe, tre
    2. Domains for 3lj9:
      1. 1411833Domain d3lj9a2: 3lj9 A:83-192 [212914]
        Other proteins in same PDB: d3lj9a1, d3lj9b1
        automated match to d2nyba2
        complexed with azi, fe, tre
      2. 1411834Domain d3lj9b2: 3lj9 B:83-192 [212916]
        Other proteins in same PDB: d3lj9a1, d3lj9b1
        automated match to d2nyba2
        complexed with azi, fe, tre
    3. Domains for 3ljf:
      1. 1411829Domain d3ljfa2: 3ljf A:83-192 [212918]
        Other proteins in same PDB: d3ljfa1, d3ljfb1, d3ljfc1, d3ljfd1
        automated match to d2nyba2
        complexed with fe, tre
      2. 1411830Domain d3ljfb2: 3ljf B:83-192 [212920]
        Other proteins in same PDB: d3ljfa1, d3ljfb1, d3ljfc1, d3ljfd1
        automated match to d2nyba2
        complexed with fe, tre
      3. 1411831Domain d3ljfc2: 3ljf C:83-192 [212922]
        Other proteins in same PDB: d3ljfa1, d3ljfb1, d3ljfc1, d3ljfd1
        automated match to d2nyba2
        complexed with fe, tre
      4. 1411832Domain d3ljfd2: 3ljf D:83-192 [212924]
        Other proteins in same PDB: d3ljfa1, d3ljfb1, d3ljfc1, d3ljfd1
        automated match to d2nyba2
        complexed with fe, tre
    4. Domains for 4l2d:
      1. 1411835Domain d4l2da2: 4l2d A:83-192 [237189]
        Other proteins in same PDB: d4l2da1, d4l2db1, d4l2dc1, d4l2dd1
        automated match to d3lioa2
        complexed with fe2, tre
      2. 1411836Domain d4l2db2: 4l2d B:83-192 [237187]
        Other proteins in same PDB: d4l2da1, d4l2db1, d4l2dc1, d4l2dd1
        automated match to d3lioa2
        complexed with fe2, tre
      3. 1411837Domain d4l2dc2: 4l2d C:83-192 [237191]
        Other proteins in same PDB: d4l2da1, d4l2db1, d4l2dc1, d4l2dd1
        automated match to d3lioa2
        complexed with fe2, tre
      4. 1411838Domain d4l2dd2: 4l2d D:83-192 [237193]
        Other proteins in same PDB: d4l2da1, d4l2db1, d4l2dc1, d4l2dd1
        automated match to d3lioa2
        complexed with fe2, tre
  22. 1411839Trypanosoma cruzi [TaxId:353153] [226483] (2 PDB entries)
    1. Domains for 4dvh:
      1. 1411840Domain d4dvha2: 4dvh A:89-202 [220052]
        Other proteins in same PDB: d4dvha1, d4dvhb1
        automated match to d1jr9a2
        complexed with fe
      2. 1411841Domain d4dvhb2: 4dvh B:89-201 [220054]
        Other proteins in same PDB: d4dvha1, d4dvhb1
        automated match to d1jr9a2
        complexed with fe
    2. Domains for 4h3e:
      1. 1411842Domain d4h3ea2: 4h3e A:120-233 [222370]
        Other proteins in same PDB: d4h3ea1, d4h3eb1
        automated match to d1jr9a2
        complexed with fe2
      2. 1411843Domain d4h3eb2: 4h3e B:120-233 [222372]
        Other proteins in same PDB: d4h3ea1, d4h3eb1
        automated match to d1jr9a2
        complexed with fe2
  23. 1411844Trypanosoma cruzi [TaxId:5693] [225304] (1 PDB entry)
  24. 1411847Trypanosome (Trypanosoma brucei) [TaxId:5691] [225661] (1 PDB entry)
  25. 1411852Yeast (Candida albicans) [TaxId:5476] [226298] (2 PDB entries)
    1. Domain for 3qvn:
    2. Domains for 4gun:
      1. 1411853Domain d4guna2: 4gun A:90-206 [234520]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      2. 1411854Domain d4gunb2: 4gun B:90-206 [227926]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d3qvna2
        complexed with mn, so4; mutant
      3. 1411855Domain d4gunc2: 4gun C:90-206 [234514]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      4. 1411856Domain d4gund2: 4gun D:90-206 [227922]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d3qvna2
        complexed with mn, so4; mutant
      5. 1411857Domain d4gune2: 4gun E:90-206 [227920]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d3qvna2
        complexed with mn, so4; mutant
      6. 1411858Domain d4gunf2: 4gun F:90-206 [234522]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      7. 1411859Domain d4gung2: 4gun G:90-206 [234523]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      8. 1411860Domain d4gunh2: 4gun H:90-206 [234521]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      9. 1411861Domain d4guni2: 4gun I:90-206 [234515]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      10. 1411862Domain d4gunj2: 4gun J:90-206 [234525]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      11. 1411863Domain d4gunk2: 4gun K:90-206 [234531]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      12. 1411864Domain d4gunl2: 4gun L:90-206 [234527]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      13. 1411865Domain d4gunm2: 4gun M:90-206 [234537]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      14. 1411866Domain d4gunn2: 4gun N:90-206 [234535]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      15. 1411867Domain d4guno2: 4gun O:90-206 [234533]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant
      16. 1411868Domain d4gunp2: 4gun P:90-206 [234529]
        Other proteins in same PDB: d4guna1, d4gunb1, d4gunc1, d4gund1, d4gune1, d4gunf1, d4gung1, d4gunh1, d4guni1, d4gunj1, d4gunk1, d4gunl1, d4gunm1, d4gunn1, d4guno1, d4gunp1
        automated match to d4gune2
        complexed with mn, so4; mutant

More info for Protein automated matches from d.44.1.0: automated matches

Timeline for Protein automated matches from d.44.1.0: automated matches: