Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1253684Class a: All alpha proteins [46456] (284 folds)
  3. 1256372Fold a.2: Long alpha-hairpin [46556] (20 superfamilies)
    2 helices; antiparallel hairpin, left-handed twist
  4. 1256627Superfamily a.2.11: Fe,Mn superoxide dismutase (SOD), N-terminal domain [46609] (2 families) (S)
    automatically mapped to Pfam PF00081
  5. 1256892Family a.2.11.0: automated matches [227154] (1 protein)
    not a true family
  6. 1256893Protein automated matches [226859] (26 species)
    not a true protein

Species:

  1. 1256894Aliivibrio salmonicida [TaxId:316275] [225612] (1 PDB entry)
  2. 1256897Anaplasma phagocytophilum [TaxId:212042] [225757] (1 PDB entry)
  3. 1256902Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [224993] (2 PDB entries)
    1. Domains for 1xre:
      1. 1256903Domain d1xrea1: 1xre A:3-92 [203155]
        Other proteins in same PDB: d1xrea2, d1xreb2
        automated match to d1jr9a1
        complexed with mn
      2. 1256904Domain d1xreb1: 1xre B:3-92 [203157]
        Other proteins in same PDB: d1xrea2, d1xreb2
        automated match to d1jr9a1
        complexed with mn
    2. Domains for 1xuq:
      1. 1256905Domain d1xuqa1: 1xuq A:3-92 [203169]
        Other proteins in same PDB: d1xuqa2, d1xuqb2
        automated match to d1unfx1
        complexed with mn
      2. 1256906Domain d1xuqb1: 1xuq B:3-92 [203171]
        Other proteins in same PDB: d1xuqa2, d1xuqb2
        automated match to d1unfx1
        complexed with mn
  4. 1256907Babesia bovis [TaxId:5865] [226662] (1 PDB entry)
  5. 1256910Bacillus subtilis [TaxId:1423] [225413] (1 PDB entry)
  6. 1256919Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226080] (2 PDB entries)
    1. Domains for 3lsu:
      1. 1256920Domain d3lsua1: 3lsu A:1-90 [213011]
        Other proteins in same PDB: d3lsua2, d3lsub2, d3lsuc2, d3lsud2
        automated match to d1kkca1
        complexed with gol, mn, na
      2. 1256921Domain d3lsub1: 3lsu B:1-90 [213013]
        Other proteins in same PDB: d3lsua2, d3lsub2, d3lsuc2, d3lsud2
        automated match to d1kkca1
        complexed with gol, mn, na
      3. 1256922Domain d3lsuc1: 3lsu C:1-90 [213015]
        Other proteins in same PDB: d3lsua2, d3lsub2, d3lsuc2, d3lsud2
        automated match to d1kkca1
        complexed with gol, mn, na
      4. 1256923Domain d3lsud1: 3lsu D:1-90 [213017]
        Other proteins in same PDB: d3lsua2, d3lsub2, d3lsuc2, d3lsud2
        automated match to d1kkca1
        complexed with gol, mn, na
    2. Domains for 4e4e:
      1. 1256924Domain d4e4ea1: 4e4e A:1-90 [220280]
        Other proteins in same PDB: d4e4ea2, d4e4eb2, d4e4ec2, d4e4ed2
        automated match to d1kkca1
        complexed with mn; mutant
      2. 1256925Domain d4e4eb1: 4e4e B:1-90 [220282]
        Other proteins in same PDB: d4e4ea2, d4e4eb2, d4e4ec2, d4e4ed2
        automated match to d1kkca1
        complexed with mn; mutant
      3. 1256926Domain d4e4ec1: 4e4e C:1-90 [220284]
        Other proteins in same PDB: d4e4ea2, d4e4eb2, d4e4ec2, d4e4ed2
        automated match to d1kkca1
        complexed with mn; mutant
      4. 1256927Domain d4e4ed1: 4e4e D:1-90 [220286]
        Other proteins in same PDB: d4e4ea2, d4e4eb2, d4e4ec2, d4e4ed2
        automated match to d1kkca1
        complexed with mn; mutant
  7. 1256928Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226251] (2 PDB entries)
    1. Domain for 3rn4:
    2. Domains for 4f6e:
      1. 1256929Domain d4f6ea1: 4f6e A:1-90 [221044]
        Other proteins in same PDB: d4f6ea2, d4f6eb2, d4f6ec2, d4f6ed2
        automated match to d1kkca1
        complexed with gol, mly, mn, trs; mutant
      2. 1256930Domain d4f6eb1: 4f6e B:1-90 [221046]
        Other proteins in same PDB: d4f6ea2, d4f6eb2, d4f6ec2, d4f6ed2
        automated match to d1kkca1
        complexed with gol, mly, mn, trs; mutant
      3. 1256931Domain d4f6ec1: 4f6e C:1-90 [221048]
        Other proteins in same PDB: d4f6ea2, d4f6eb2, d4f6ec2, d4f6ed2
        automated match to d1kkca1
        complexed with gol, mly, mn, trs; mutant
      4. 1256932Domain d4f6ed1: 4f6e D:1-90 [221050]
        Other proteins in same PDB: d4f6ea2, d4f6eb2, d4f6ec2, d4f6ed2
        automated match to d1kkca1
        complexed with gol, mly, mn, trs; mutant
  8. 1256934Chaetomium thermophilum [TaxId:209285] [229762] (1 PDB entry)
  9. 1256939Clostridium difficile [TaxId:272563] [226452] (4 PDB entries)
    1. Domain for 3tjt:
    2. Domain for 4jyy:
    3. Domain for 4jz2:
    4. Domain for 4jzg:
  10. 1256944Coxiella burnetii [TaxId:777] [226206] (1 PDB entry)
  11. 1256947Deinococcus radiodurans [TaxId:243230] [225052] (2 PDB entries)
    1. Domains for 2cdy:
      1. 1256948Domain d2cdya1: 2cdy A:-2-87 [203770]
        Other proteins in same PDB: d2cdya2, d2cdyb2, d2cdyc2, d2cdyd2
        automated match to d1y67a1
        complexed with mn
      2. 1256949Domain d2cdyb1: 2cdy B:-2-87 [203772]
        Other proteins in same PDB: d2cdya2, d2cdyb2, d2cdyc2, d2cdyd2
        automated match to d1y67a1
        complexed with mn
      3. 1256950Domain d2cdyc1: 2cdy C:-1-87 [203774]
        Other proteins in same PDB: d2cdya2, d2cdyb2, d2cdyc2, d2cdyd2
        automated match to d1y67a1
        complexed with mn
      4. 1256951Domain d2cdyd1: 2cdy D:-1-87 [203776]
        Other proteins in same PDB: d2cdya2, d2cdyb2, d2cdyc2, d2cdyd2
        automated match to d1y67a1
        complexed with mn
    2. Domains for 2ce4:
      1. 1256952Domain d2ce4a1: 2ce4 A:1-87 [203778]
        Other proteins in same PDB: d2ce4a2, d2ce4b2
        automated match to d1y67a1
        complexed with mn
      2. 1256953Domain d2ce4b1: 2ce4 B:-1-87 [203780]
        Other proteins in same PDB: d2ce4a2, d2ce4b2
        automated match to d1y67a1
        complexed with mn
  12. 1256954Francisella tularensis [TaxId:119856] [225665] (1 PDB entry)
  13. 1256957Helicobacter pylori [TaxId:210] [225464] (1 PDB entry)
  14. 1256960Leishmania major [TaxId:5664] [226380] (1 PDB entry)
  15. 1256973Malaria parasite (Plasmodium knowlesi) [TaxId:5850] [225014] (1 PDB entry)
  16. 1256976Nematode (Caenorhabditis elegans) [TaxId:6239] [225668] (2 PDB entries)
    1. Domains for 3dc5:
      1. 1256977Domain d3dc5a1: 3dc5 A:1-85 [209080]
        Other proteins in same PDB: d3dc5a2, d3dc5c2
        automated match to d1bsma1
        complexed with mli, mn
      2. 1256978Domain d3dc5c1: 3dc5 C:0-85 [209082]
        Other proteins in same PDB: d3dc5a2, d3dc5c2
        automated match to d1bsma1
        complexed with mli, mn
    2. Domains for 3dc6:
      1. 1256979Domain d3dc6a1: 3dc6 A:1-85 [209084]
        Other proteins in same PDB: d3dc6a2, d3dc6c2
        automated match to d1bsma1
        complexed with mn, so4
      2. 1256980Domain d3dc6c1: 3dc6 C:0-85 [209086]
        Other proteins in same PDB: d3dc6a2, d3dc6c2
        automated match to d1bsma1
        complexed with mn, so4
  17. 1256981Perkinsus marinus [TaxId:31276] [225086] (2 PDB entries)
    1. Domains for 2cw2:
      1. 1256982Domain d2cw2a1: 2cw2 A:2-89 [203834]
        Other proteins in same PDB: d2cw2a2, d2cw2b2
        automated match to d1unfx1
        complexed with fe
      2. 1256983Domain d2cw2b1: 2cw2 B:5-89 [203836]
        Other proteins in same PDB: d2cw2a2, d2cw2b2
        automated match to d1unfx1
        complexed with fe
    2. Domains for 2cw3:
      1. 1256984Domain d2cw3a1: 2cw3 A:4-90 [203838]
        Other proteins in same PDB: d2cw3a2, d2cw3b2
        automated match to d1isca1
        complexed with fe
      2. 1256985Domain d2cw3b1: 2cw3 B:8-90 [203840]
        Other proteins in same PDB: d2cw3a2, d2cw3b2
        automated match to d1isca1
        complexed with fe
  18. 1256986Plasmodium berghei [TaxId:5821] [224986] (1 PDB entry)
  19. 1256989Plasmodium falciparum [TaxId:137071] [225301] (1 PDB entry)
  20. 1256992Plasmodium falciparum [TaxId:36329] [225153] (1 PDB entry)
  21. 1256995Pseudoalteromonas haloplanktis [TaxId:228] [237179] (2 PDB entries)
    1. Domain for 4l2b:
    2. Domains for 4l2c:
      1. 1256996Domain d4l2ca1: 4l2c A:1-82 [237180]
        Other proteins in same PDB: d4l2ca2, d4l2cb2
        automated match to d1pl4a1
        complexed with fe, tre; mutant
      2. 1256997Domain d4l2cb1: 4l2c B:1-82 [237184]
        Other proteins in same PDB: d4l2ca2, d4l2cb2
        automated match to d1pl4a1
        complexed with fe, tre; mutant
  22. 1256999Pseudoalteromonas haloplanktis [TaxId:326442] [225959] (4 PDB entries)
    1. Domains for 3lio:
      1. 1257000Domain d3lioa1: 3lio A:1-82 [212901]
        Other proteins in same PDB: d3lioa2, d3liob2
        automated match to d1isca1
        complexed with fe, tre
      2. 1257001Domain d3liob1: 3lio B:1-82 [212903]
        Other proteins in same PDB: d3lioa2, d3liob2
        automated match to d1isca1
        complexed with fe, tre
    2. Domains for 3lj9:
      1. 1257006Domain d3lj9a1: 3lj9 A:1-82 [212913]
        Other proteins in same PDB: d3lj9a2, d3lj9b2
        automated match to d1isca1
        complexed with azi, fe, tre
      2. 1257007Domain d3lj9b1: 3lj9 B:1-82 [212915]
        Other proteins in same PDB: d3lj9a2, d3lj9b2
        automated match to d1isca1
        complexed with azi, fe, tre
    3. Domains for 3ljf:
      1. 1257002Domain d3ljfa1: 3ljf A:1-82 [212917]
        Other proteins in same PDB: d3ljfa2, d3ljfb2, d3ljfc2, d3ljfd2
        automated match to d1isca1
        complexed with fe, tre
      2. 1257003Domain d3ljfb1: 3ljf B:1-82 [212919]
        Other proteins in same PDB: d3ljfa2, d3ljfb2, d3ljfc2, d3ljfd2
        automated match to d1isca1
        complexed with fe, tre
      3. 1257004Domain d3ljfc1: 3ljf C:1-82 [212921]
        Other proteins in same PDB: d3ljfa2, d3ljfb2, d3ljfc2, d3ljfd2
        automated match to d1isca1
        complexed with fe, tre
      4. 1257005Domain d3ljfd1: 3ljf D:1-82 [212923]
        Other proteins in same PDB: d3ljfa2, d3ljfb2, d3ljfc2, d3ljfd2
        automated match to d1isca1
        complexed with fe, tre
    4. Domains for 4l2d:
      1. 1257008Domain d4l2da1: 4l2d A:1-82 [237188]
        Other proteins in same PDB: d4l2da2, d4l2db2, d4l2dc2, d4l2dd2
        automated match to d3lioa1
        complexed with fe2, tre
      2. 1257009Domain d4l2db1: 4l2d B:1-82 [237186]
        Other proteins in same PDB: d4l2da2, d4l2db2, d4l2dc2, d4l2dd2
        automated match to d3lioa1
        complexed with fe2, tre
      3. 1257010Domain d4l2dc1: 4l2d C:1-82 [237190]
        Other proteins in same PDB: d4l2da2, d4l2db2, d4l2dc2, d4l2dd2
        automated match to d3lioa1
        complexed with fe2, tre
      4. 1257011Domain d4l2dd1: 4l2d D:1-82 [237192]
        Other proteins in same PDB: d4l2da2, d4l2db2, d4l2dc2, d4l2dd2
        automated match to d3lioa1
        complexed with fe2, tre
  23. 1257012Trypanosoma cruzi [TaxId:353153] [226482] (2 PDB entries)
    1. Domains for 4dvh:
      1. 1257013Domain d4dvha1: 4dvh A:0-88 [220051]
        Other proteins in same PDB: d4dvha2, d4dvhb2
        automated match to d1jr9a1
        complexed with fe
      2. 1257014Domain d4dvhb1: 4dvh B:-1-88 [220053]
        Other proteins in same PDB: d4dvha2, d4dvhb2
        automated match to d1jr9a1
        complexed with fe
    2. Domains for 4h3e:
      1. 1257015Domain d4h3ea1: 4h3e A:20-119 [222369]
        Other proteins in same PDB: d4h3ea2, d4h3eb2
        automated match to d1jr9a1
        complexed with fe2
      2. 1257016Domain d4h3eb1: 4h3e B:20-119 [222371]
        Other proteins in same PDB: d4h3ea2, d4h3eb2
        automated match to d1jr9a1
        complexed with fe2
  24. 1257017Trypanosoma cruzi [TaxId:5693] [225303] (1 PDB entry)
  25. 1257020Trypanosome (Trypanosoma brucei) [TaxId:5691] [225660] (1 PDB entry)
  26. 1257025Yeast (Candida albicans) [TaxId:5476] [226297] (2 PDB entries)
    1. Domain for 3qvn:
    2. Domains for 4gun:
      1. 1257026Domain d4guna1: 4gun A:2-89 [234517]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      2. 1257027Domain d4gunb1: 4gun B:2-89 [227925]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d3qvna1
        complexed with mn, so4; mutant
      3. 1257028Domain d4gunc1: 4gun C:2-89 [234512]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      4. 1257029Domain d4gund1: 4gun D:2-89 [227921]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d3qvna1
        complexed with mn, so4; mutant
      5. 1257030Domain d4gune1: 4gun E:2-89 [227919]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d3qvna1
        complexed with mn, so4; mutant
      6. 1257031Domain d4gunf1: 4gun F:2-89 [234516]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      7. 1257032Domain d4gung1: 4gun G:2-89 [234519]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      8. 1257033Domain d4gunh1: 4gun H:2-89 [234518]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      9. 1257034Domain d4guni1: 4gun I:2-89 [234513]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      10. 1257035Domain d4gunj1: 4gun J:2-89 [234524]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      11. 1257036Domain d4gunk1: 4gun K:2-89 [234530]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      12. 1257037Domain d4gunl1: 4gun L:2-89 [234526]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      13. 1257038Domain d4gunm1: 4gun M:2-89 [234536]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      14. 1257039Domain d4gunn1: 4gun N:2-89 [234534]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      15. 1257040Domain d4guno1: 4gun O:2-89 [234532]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant
      16. 1257041Domain d4gunp1: 4gun P:3-89 [234528]
        Other proteins in same PDB: d4guna2, d4gunb2, d4gunc2, d4gund2, d4gune2, d4gunf2, d4gung2, d4gunh2, d4guni2, d4gunj2, d4gunk2, d4gunl2, d4gunm2, d4gunn2, d4guno2, d4gunp2
        automated match to d4gune1
        complexed with mn, so4; mutant

More info for Protein automated matches from a.2.11.0: automated matches

Timeline for Protein automated matches from a.2.11.0: automated matches: