Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2243857Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2246832Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2246833Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2248526Family e.8.1.0: automated matches [227142] (1 protein)
    not a true family
  6. 2248527Protein automated matches [226844] (7 species)
    not a true protein

Species:

  1. 2248528Infectious bursal disease virus [TaxId:10995] [255549] (3 PDB entries)
    1. Domain for 2pus:
    2. Domain for 2r70:
    3. Domain for 2r72:
  2. 2248532Infectious pancreatic necrosis virus [TaxId:11002] [226177] (4 PDB entries)
    1. Domains for 2yi8:
      1. 2248541Domain d2yi8a1: 2yi8 A:11-790 [207614]
        Other proteins in same PDB: d2yi8a2, d2yi8b2, d2yi8c2, d2yi8d2, d2yi8e2
        automated match to d2pgga1
        complexed with cl, k
      2. 2248542Domain d2yi8b1: 2yi8 B:11-790 [207615]
        Other proteins in same PDB: d2yi8a2, d2yi8b2, d2yi8c2, d2yi8d2, d2yi8e2
        automated match to d2pgga1
        complexed with cl, k
      3. 2248543Domain d2yi8c1: 2yi8 C:11-790 [207616]
        Other proteins in same PDB: d2yi8a2, d2yi8b2, d2yi8c2, d2yi8d2, d2yi8e2
        automated match to d2pgga1
        complexed with cl, k
      4. 2248544Domain d2yi8d1: 2yi8 D:11-790 [207617]
        Other proteins in same PDB: d2yi8a2, d2yi8b2, d2yi8c2, d2yi8d2, d2yi8e2
        automated match to d2pgga1
        complexed with cl, k
      5. 2248545Domain d2yi8e1: 2yi8 E:11-790 [207618]
        Other proteins in same PDB: d2yi8a2, d2yi8b2, d2yi8c2, d2yi8d2, d2yi8e2
        automated match to d2pgga1
        complexed with cl, k
    2. Domains for 2yi9:
      1. 2248533Domain d2yi9a1: 2yi9 A:11-790 [207619]
        Other proteins in same PDB: d2yi9a2, d2yi9b2, d2yi9c2, d2yi9d2, d2yi9e2
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      2. 2248534Domain d2yi9b1: 2yi9 B:11-790 [207620]
        Other proteins in same PDB: d2yi9a2, d2yi9b2, d2yi9c2, d2yi9d2, d2yi9e2
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      3. 2248535Domain d2yi9c1: 2yi9 C:11-790 [207621]
        Other proteins in same PDB: d2yi9a2, d2yi9b2, d2yi9c2, d2yi9d2, d2yi9e2
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      4. 2248536Domain d2yi9d1: 2yi9 D:11-790 [207622]
        Other proteins in same PDB: d2yi9a2, d2yi9b2, d2yi9c2, d2yi9d2, d2yi9e2
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      5. 2248537Domain d2yi9e1: 2yi9 E:11-790 [207623]
        Other proteins in same PDB: d2yi9a2, d2yi9b2, d2yi9c2, d2yi9d2, d2yi9e2
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
    3. Domains for 2yia:
      1. 2248546Domain d2yiaa1: 2yia A:3-790 [244761]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      2. 2248547Domain d2yiab1: 2yia B:3-790 [244762]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      3. 2248548Domain d2yiac1: 2yia C:3-790 [244763]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      4. 2248549Domain d2yiad1: 2yia D:3-790 [244764]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      5. 2248550Domain d2yiae1: 2yia E:3-790 [244765]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      6. 2248551Domain d2yiaf1: 2yia F:11-790 [244766]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      7. 2248552Domain d2yiag1: 2yia G:31-790 [244767]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
      8. 2248553Domain d2yiah1: 2yia H:3-790 [244768]
        Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
        automated match to d2yi9a_
        complexed with k
    4. Domains for 3zed:
      1. 2248538Domain d3zeda_: 3zed A: [250762]
        automated match to d2yi9a_
        complexed with gol, k
      2. 2248539Domain d3zedb_: 3zed B: [250763]
        automated match to d2yi9a_
        complexed with gol, k
      3. 2248540Domain d3zedc_: 3zed C: [250764]
        automated match to d2yi9a_
        complexed with gol, k
  3. 2248554Mengo virus [TaxId:12107] [237860] (3 PDB entries)
    1. Domain for 4nyz:
    2. Domains for 4nz0:
      1. 2248557Domain d4nz0a_: 4nz0 A: [237862]
        automated match to d1rdra_
        complexed with cl, gol
      2. 2248558Domain d4nz0b_: 4nz0 B: [240661]
        automated match to d4nz0a_
        complexed with cl, gol
      3. 2248559Domain d4nz0c_: 4nz0 C: [240662]
        automated match to d4nz0a_
        complexed with cl, gol
      4. 2248560Domain d4nz0d_: 4nz0 D: [240663]
        automated match to d4nz0a_
        complexed with cl, gol
      5. 2248561Domain d4nz0e_: 4nz0 E: [240664]
        automated match to d4nz0a_
        complexed with cl, gol
      6. 2248562Domain d4nz0f_: 4nz0 F: [240665]
        automated match to d4nz0a_
        complexed with cl, gol
    3. Domain for 4y2c:
  4. 2248563Pyrococcus furiosus [TaxId:2261] [224944] (3 PDB entries)
    1. Domain for 2jgu:
    2. Domain for 3a2f:
    3. Domains for 4ahc:
      1. 2248564Domain d4ahca2: 4ahc A:348-757 [218867]
        Other proteins in same PDB: d4ahca1, d4ahcb1
        automated match to d2vwja2
        complexed with gol
      2. 2248565Domain d4ahcb2: 4ahc B:348-756 [218869]
        Other proteins in same PDB: d4ahca1, d4ahcb1
        automated match to d2vwja2
        complexed with gol
  5. 2248568Pyrococcus kodakaraensis [TaxId:69014] [311139] (1 PDB entry)
  6. 2248570Sapporo virus [TaxId:95342] [231278] (4 PDB entries)
    1. Domain for 2ckw:
    2. Domain for 2uut:
    3. Domain for 2uuw:
    4. Domains for 2wk4:
      1. 2248573Domain d2wk4a_: 2wk4 A: [244150]
        automated match to d2uuta_
        complexed with gol; mutant
      2. 2248574Domain d2wk4b_: 2wk4 B: [244151]
        automated match to d2uuta_
        complexed with gol; mutant
  7. 2248576Thermococcus kodakarensis [TaxId:311400] [342434] (1 PDB entry)

More info for Protein automated matches from e.8.1.0: automated matches

Timeline for Protein automated matches from e.8.1.0: automated matches: