Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1689992Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1692262Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1692263Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1693774Family e.8.1.0: automated matches [227142] (1 protein)
    not a true family
  6. 1693775Protein automated matches [226844] (5 species)
    not a true protein

Species:

  1. 1693776Infectious bursal disease virus [TaxId:10995] [255549] (3 PDB entries)
    1. Domain for 2pus:
    2. Domain for 2r70:
    3. Domain for 2r72:
  2. 1693780Infectious pancreatic necrosis virus [TaxId:11002] [226177] (4 PDB entries)
    1. Domains for 2yi8:
      1. 1693789Domain d2yi8a_: 2yi8 A: [207614]
        automated match to d2pgga1
        complexed with cl, k
      2. 1693790Domain d2yi8b_: 2yi8 B: [207615]
        automated match to d2pgga1
        complexed with cl, k
      3. 1693791Domain d2yi8c_: 2yi8 C: [207616]
        automated match to d2pgga1
        complexed with cl, k
      4. 1693792Domain d2yi8d_: 2yi8 D: [207617]
        automated match to d2pgga1
        complexed with cl, k
      5. 1693793Domain d2yi8e_: 2yi8 E: [207618]
        automated match to d2pgga1
        complexed with cl, k
    2. Domains for 2yi9:
      1. 1693781Domain d2yi9a_: 2yi9 A: [207619]
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      2. 1693782Domain d2yi9b_: 2yi9 B: [207620]
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      3. 1693783Domain d2yi9c_: 2yi9 C: [207621]
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      4. 1693784Domain d2yi9d_: 2yi9 D: [207622]
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
      5. 1693785Domain d2yi9e_: 2yi9 E: [207623]
        automated match to d2pgga1
        protein/RNA complex; complexed with cl, k, mg
    3. Domains for 2yia:
      1. 1693794Domain d2yiaa_: 2yia A: [244761]
        automated match to d2yi9a_
        complexed with k
      2. 1693795Domain d2yiab_: 2yia B: [244762]
        automated match to d2yi9a_
        complexed with k
      3. 1693796Domain d2yiac_: 2yia C: [244763]
        automated match to d2yi9a_
        complexed with k
      4. 1693797Domain d2yiad_: 2yia D: [244764]
        automated match to d2yi9a_
        complexed with k
      5. 1693798Domain d2yiae_: 2yia E: [244765]
        automated match to d2yi9a_
        complexed with k
      6. 1693799Domain d2yiaf_: 2yia F: [244766]
        automated match to d2yi9a_
        complexed with k
      7. 1693800Domain d2yiag_: 2yia G: [244767]
        automated match to d2yi9a_
        complexed with k
      8. 1693801Domain d2yiah_: 2yia H: [244768]
        automated match to d2yi9a_
        complexed with k
    4. Domains for 3zed:
      1. 1693786Domain d3zeda_: 3zed A: [250762]
        automated match to d2yi9a_
        complexed with gol, k
      2. 1693787Domain d3zedb_: 3zed B: [250763]
        automated match to d2yi9a_
        complexed with gol, k
      3. 1693788Domain d3zedc_: 3zed C: [250764]
        automated match to d2yi9a_
        complexed with gol, k
  3. 1693802Mengo virus [TaxId:12107] [237860] (2 PDB entries)
    1. Domain for 4nyz:
    2. Domains for 4nz0:
      1. 1693804Domain d4nz0a_: 4nz0 A: [237862]
        automated match to d1rdra_
        complexed with cl, gol
      2. 1693805Domain d4nz0b_: 4nz0 B: [240661]
        automated match to d4nz0a_
        complexed with cl, gol
      3. 1693806Domain d4nz0c_: 4nz0 C: [240662]
        automated match to d4nz0a_
        complexed with cl, gol
      4. 1693807Domain d4nz0d_: 4nz0 D: [240663]
        automated match to d4nz0a_
        complexed with cl, gol
      5. 1693808Domain d4nz0e_: 4nz0 E: [240664]
        automated match to d4nz0a_
        complexed with cl, gol
      6. 1693809Domain d4nz0f_: 4nz0 F: [240665]
        automated match to d4nz0a_
        complexed with cl, gol
  4. 1693810Pyrococcus furiosus [TaxId:2261] [224944] (3 PDB entries)
    1. Domain for 2jgu:
    2. Domain for 3a2f:
    3. Domains for 4ahc:
      1. 1693811Domain d4ahca2: 4ahc A:348-757 [218867]
        Other proteins in same PDB: d4ahca1, d4ahcb1
        automated match to d2vwja2
        complexed with gol
      2. 1693812Domain d4ahcb2: 4ahc B:348-756 [218869]
        Other proteins in same PDB: d4ahca1, d4ahcb1
        automated match to d2vwja2
        complexed with gol
  5. 1693815Sapporo virus [TaxId:95342] [231278] (4 PDB entries)
    1. Domain for 2ckw:
    2. Domain for 2uut:
    3. Domain for 2uuw:
    4. Domains for 2wk4:
      1. 1693818Domain d2wk4a_: 2wk4 A: [244150]
        automated match to d2uuta_
        complexed with gol; mutant
      2. 1693819Domain d2wk4b_: 2wk4 B: [244151]
        automated match to d2uuta_
        complexed with gol; mutant

More info for Protein automated matches from e.8.1.0: automated matches

Timeline for Protein automated matches from e.8.1.0: automated matches: