SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.0: automated matches [227142] (1 protein)
not a true family
Protein automated matches [226844] (4 species)
not a true protein

Species:

Infectious pancreatic necrosis virus [TaxId:11002] [226177] (2 PDB entries)
1. Domains for 2yi8:
  1. Domain d2yi8a_: 2yi8 A: [207614]
    automated match to d2pgga1
    complexed with cl, k
  2. Domain d2yi8b_: 2yi8 B: [207615]
    automated match to d2pgga1
    complexed with cl, k
  3. Domain d2yi8c_: 2yi8 C: [207616]
    automated match to d2pgga1
    complexed with cl, k
  4. Domain d2yi8d_: 2yi8 D: [207617]
    automated match to d2pgga1
    complexed with cl, k
  5. Domain d2yi8e_: 2yi8 E: [207618]
    automated match to d2pgga1
    complexed with cl, k
2. Domains for 2yi9:
  1. Domain d2yi9a_: 2yi9 A: [207619]
    automated match to d2pgga1
    protein/RNA complex; complexed with cl, k, mg
  2. Domain d2yi9b_: 2yi9 B: [207620]
    automated match to d2pgga1
    protein/RNA complex; complexed with cl, k, mg
  3. Domain d2yi9c_: 2yi9 C: [207621]
    automated match to d2pgga1
    protein/RNA complex; complexed with cl, k, mg
  4. Domain d2yi9d_: 2yi9 D: [207622]
    automated match to d2pgga1
    protein/RNA complex; complexed with cl, k, mg
  5. Domain d2yi9e_: 2yi9 E: [207623]
    automated match to d2pgga1
    protein/RNA complex; complexed with cl, k, mg
Mengo virus [TaxId:12107] [237860] (2 PDB entries)
1. Domain for 4nyz:
  - Domain d4nyza_: 4nyz A: [237861]
    automated match to d1rdra_
    complexed with gln, gol, mg
2. Domain for 4nz0:
  - Domain d4nz0a_: 4nz0 A: [237862]
    automated match to d1rdra_
    complexed with cl, gol
Pyrococcus furiosus [TaxId:2261] [224944] (3 PDB entries)
1. Domain for 2jgu:
  - Domain d2jgua2: 2jgu A:348-758 [205040]
    Other proteins in same PDB: d2jgua1
    automated match to d2vwja2
    complexed with mn
2. Domain for 3a2f:
  - Domain d3a2fa2: 3a2f A:348-773 [208097]
    Other proteins in same PDB: d3a2fa1, d3a2fb1, d3a2fb2
    automated match to d2vwja2
    protein/DNA complex; mutant
3. Domains for 4ahc:
  1. Domain d4ahca2: 4ahc A:348-757 [218867]
    Other proteins in same PDB: d4ahca1, d4ahcb1
    automated match to d2vwja2
    complexed with gol
  2. Domain d4ahcb2: 4ahc B:348-756 [218869]
    Other proteins in same PDB: d4ahca1, d4ahcb1
    automated match to d2vwja2
    complexed with gol
Sapporo virus [TaxId:95342] [231278] (1 PDB entry)
- Domain for 2uut:
  - Domain d2uuta_: 2uut A: [231279]
    automated match to d3qida_
    mutant

More info for Protein automated matches from e.8.1.0: automated matches

Timeline for Protein automated matches from e.8.1.0: automated matches:

Protein automated matches from e.8.1.0: automated matches is new in SCOPe 2.03-stable
Protein automated matches from e.8.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from e.8.1.0: automated matches appears in the current release, SCOPe 2.08