Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1641761Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 1641762Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 1642705Family d.19.1.0: automated matches [227140] (1 protein)
    not a true family
  6. 1642706Protein automated matches [226842] (4 species)
    not a true protein

Species:

  1. 1642707Chicken (Gallus gallus) [TaxId:9031] [225828] (8 PDB entries)
    1. Domain for 2yez:
    2. Domain for 2yf1:
    3. Domain for 2yf5:
    4. Domain for 2yf6:
    5. Domain for 3dbx:
    6. Domains for 3jvg:
      1. 1642711Domain d3jvga1: 3jvg A:6-180 [199589]
        Other proteins in same PDB: d3jvga2, d3jvgb2, d3jvgc_, d3jvgd_
        automated match to d1gzpa2
        complexed with cl, nag, unl
      2. 1642712Domain d3jvgb1: 3jvg B:6-180 [199591]
        Other proteins in same PDB: d3jvga2, d3jvgb2, d3jvgc_, d3jvgd_
        automated match to d1gzpa2
        complexed with cl, nag, unl
    7. Domain for 3p73:
    8. Domain for 3p77:
  2. 1642717Cow (Bos taurus) [TaxId:9913] [256301] (1 PDB entry)
  3. 1642719Human (Homo sapiens) [TaxId:9606] [226044] (26 PDB entries)
    1. Domains for 2wbj:
      1. 1642759Domain d2wbja1: 2wbj A:3-81 [244084]
        Other proteins in same PDB: d2wbja2, d2wbjb1, d2wbjb2, d2wbjc1, d2wbjc2, d2wbje2, d2wbjf1, d2wbjf2, d2wbjg1, d2wbjg2
        automated match to d1fnga2
        complexed with nag, so4
      2. 1642760Domain d2wbje1: 2wbj E:4-81 [244090]
        Other proteins in same PDB: d2wbja2, d2wbjb1, d2wbjb2, d2wbjc1, d2wbjc2, d2wbje2, d2wbjf1, d2wbjf2, d2wbjg1, d2wbjg2
        automated match to d1fnga2
        complexed with nag, so4
    2. Domains for 2wy3:
      1. 1642720Domain d2wy3a_: 2wy3 A: [244353]
        automated match to d1tmca_
        complexed with act, nag, peu
      2. 1642721Domain d2wy3c_: 2wy3 C: [244354]
        automated match to d1tmca_
        complexed with act, nag, peu
    3. Domain for 3c5j:
    4. Domains for 3m1b:
      1. 1642761Domain d3m1ba1: 3m1b A:5-176 [247564]
        Other proteins in same PDB: d3m1ba2, d3m1bb_, d3m1bc2, d3m1bd_, d3m1be2, d3m1bf_, d3m1bg2, d3m1bh_
        automated match to d3frua2
      2. 1642762Domain d3m1bc1: 3m1b C:5-176 [247567]
        Other proteins in same PDB: d3m1ba2, d3m1bb_, d3m1bc2, d3m1bd_, d3m1be2, d3m1bf_, d3m1bg2, d3m1bh_
        automated match to d3frua2
      3. 1642763Domain d3m1be1: 3m1b E:5-176 [247570]
        Other proteins in same PDB: d3m1ba2, d3m1bb_, d3m1bc2, d3m1bd_, d3m1be2, d3m1bf_, d3m1bg2, d3m1bh_
        automated match to d3frua2
      4. 1642764Domain d3m1bg1: 3m1b G:5-176 [247573]
        Other proteins in same PDB: d3m1ba2, d3m1bb_, d3m1bc2, d3m1bd_, d3m1be2, d3m1bf_, d3m1bg2, d3m1bh_
        automated match to d3frua2
    5. Domain for 3ov6:
    6. Domain for 3pl6:
    7. Domain for 3s6c:
    8. Domains for 3wex:
      1. 1642741Domain d3wexa1: 3wex A:1-82 [258588]
        Other proteins in same PDB: d3wexa2, d3wexc2, d3wexe2, d3wexg2
        automated match to d1f3ja2
        complexed with nag
      2. 1642742Domain d3wexc1: 3wex C:1-82 [258592]
        Other proteins in same PDB: d3wexa2, d3wexc2, d3wexe2, d3wexg2
        automated match to d1f3ja2
        complexed with nag
      3. 1642743Domain d3wexe1: 3wex E:1-82 [258590]
        Other proteins in same PDB: d3wexa2, d3wexc2, d3wexe2, d3wexg2
        automated match to d1f3ja2
        complexed with nag
      4. 1642744Domain d3wexg1: 3wex G:1-82 [258586]
        Other proteins in same PDB: d3wexa2, d3wexc2, d3wexe2, d3wexg2
        automated match to d1f3ja2
        complexed with nag
    9. Domain for 4aen:
    10. Domain for 4ah2:
    11. Domain for 4fqx:
    12. Domains for 4k71:
      1. 1642748Domain d4k71b1: 4k71 B:5-176 [235111]
        Other proteins in same PDB: d4k71a1, d4k71a2, d4k71a3, d4k71b2, d4k71c_, d4k71d1, d4k71d2, d4k71d3, d4k71e2, d4k71f_
        automated match to d4k71e1
        complexed with so4
      2. 1642749Domain d4k71e1: 4k71 E:5-176 [228471]
        Other proteins in same PDB: d4k71a1, d4k71a2, d4k71a3, d4k71b2, d4k71c_, d4k71d1, d4k71d2, d4k71d3, d4k71e2, d4k71f_
        automated match to d3frua2
        complexed with so4
    13. Domains for 4l4t:
      1. 1642726Domain d4l4ta1: 4l4t A:0-178 [235264]
        Other proteins in same PDB: d4l4ta2, d4l4tb_, d4l4tc2, d4l4td1, d4l4td2, d4l4te1, d4l4te2, d4l4tf_, d4l4tg1, d4l4tg2, d4l4th1, d4l4th2
        automated match to d1agda2
        complexed with 6fp
      2. 1642727Domain d4l4tc1: 4l4t C:0-178 [235262]
        Other proteins in same PDB: d4l4ta2, d4l4tb_, d4l4tc2, d4l4td1, d4l4td2, d4l4te1, d4l4te2, d4l4tf_, d4l4tg1, d4l4tg2, d4l4th1, d4l4th2
        automated match to d1agda2
        complexed with 6fp
    14. Domains for 4l4v:
      1. 1642723Domain d4l4va1: 4l4v A:1-178 [240471]
        Other proteins in same PDB: d4l4va2, d4l4vb_, d4l4vc2, d4l4vd1, d4l4vd2, d4l4ve1, d4l4ve2, d4l4vf_, d4l4vg1, d4l4vg2, d4l4vh1, d4l4vh2
        automated match to d4l4tc1
        complexed with 1vy, gol
      2. 1642724Domain d4l4vc1: 4l4v C:0-178 [240473]
        Other proteins in same PDB: d4l4va2, d4l4vb_, d4l4vc2, d4l4vd1, d4l4vd2, d4l4ve1, d4l4ve2, d4l4vf_, d4l4vg1, d4l4vg2, d4l4vh1, d4l4vh2
        automated match to d4l4tc1
        complexed with 1vy, gol
    15. Domains for 4lcw:
      1. 1642733Domain d4lcwa1: 4lcw A:0-178 [228083]
        Other proteins in same PDB: d4lcwa2, d4lcwb_, d4lcwc2, d4lcwd1, d4lcwd2, d4lcwe1, d4lcwe2, d4lcwf_, d4lcwg1, d4lcwg2, d4lcwh1, d4lcwh2
        automated match to d2bcka2
        complexed with 1vy, gol
      2. 1642734Domain d4lcwc1: 4lcw C:0-178 [235338]
        Other proteins in same PDB: d4lcwa2, d4lcwb_, d4lcwc2, d4lcwd1, d4lcwd2, d4lcwe1, d4lcwe2, d4lcwf_, d4lcwg1, d4lcwg2, d4lcwh1, d4lcwh2
        automated match to d4lcwa1
        complexed with 1vy, gol
    16. Domain for 4nqc:
    17. Domains for 4nqe:
      1. 1642730Domain d4nqea1: 4nqe A:0-178 [261101]
        Other proteins in same PDB: d4nqea2, d4nqed1, d4nqed2, d4nqee1, d4nqee2, d4nqeg1, d4nqeh1, d4nqeh2
        automated match to d4l4ta1
        complexed with 2l4
      2. 1642731Domain d4nqec1: 4nqe C:0-178 [261100]
        Other proteins in same PDB: d4nqea2, d4nqed1, d4nqed2, d4nqee1, d4nqee2, d4nqeg1, d4nqeh1, d4nqeh2
        automated match to d4l4ta1
        complexed with 2l4
    18. Domain for 4ono:
    19. Domains for 4ozf:
      1. 1642753Domain d4ozfa1: 4ozf A:1-81 [257360]
        Other proteins in same PDB: d4ozfa2, d4ozfb2, d4ozfg1, d4ozfg2, d4ozfh1, d4ozfh2
        automated match to d1uvqa2
        complexed with nag
      2. 1642754Domain d4ozfb1: 4ozf B:3-92 [257362]
        Other proteins in same PDB: d4ozfa2, d4ozfb2, d4ozfg1, d4ozfg2, d4ozfh1, d4ozfh2
        automated match to d1klub2
        complexed with nag
    20. Domains for 4p4k:
      1. 1642755Domain d4p4ka1: 4p4k A:2-83 [258082]
        Other proteins in same PDB: d4p4ka2, d4p4kc1, d4p4kc2, d4p4kd1, d4p4kd2, d4p4ke2, d4p4kh1, d4p4kh2
        automated match to d1muja2
        complexed with 0be, na, nag
      2. 1642756Domain d4p4ke1: 4p4k E:1-83 [258084]
        Other proteins in same PDB: d4p4ka2, d4p4kc1, d4p4kc2, d4p4kd1, d4p4kd2, d4p4ke2, d4p4kh1, d4p4kh2
        automated match to d1muja2
        complexed with 0be, na, nag
    21. Domain for 4p5m:
    22. Domains for 4pja:
      1. 1642750Domain d4pjaa1: 4pja A:0-178 [258147]
        Other proteins in same PDB: d4pjaa2, d4pjab_, d4pjad_, d4pjag1, d4pjag2, d4pjah1, d4pjah2
        automated match to d4l4ta1
        complexed with 2lj, gol
      2. 1642751Domain d4pjac1: 4pja C:0-178 [258735]
        Other proteins in same PDB: d4pjac2, d4pjae1, d4pjae2, d4pjaf1, d4pjaf2
        automated match to d4l4ta1
        complexed with 2lj, gol
    23. Domain for 4pjb:
    24. Domains for 4pjc:
      1. 1642736Domain d4pjca1: 4pjc A:0-178 [258740]
        Other proteins in same PDB: d4pjca2, d4pjcc2, d4pjcg1, d4pjcg2, d4pjch1, d4pjch2
        automated match to d4l4ta1
        complexed with 2lj, b3p
      2. 1642737Domain d4pjcc1: 4pjc C:0-178 [258741]
        Other proteins in same PDB: d4pjca2, d4pjcc2, d4pjcg1, d4pjcg2, d4pjch1, d4pjch2
        automated match to d4l4ta1
        complexed with 2lj, b3p
    25. Domains for 4pjf:
      1. 1642738Domain d4pjfa1: 4pjf A:1-178 [259450]
        Other proteins in same PDB: d4pjfa2, d4pjfc2
        automated match to d4l4ta1
        complexed with 30w, gol
      2. 1642739Domain d4pjfc1: 4pjf C:1-178 [259452]
        Other proteins in same PDB: d4pjfa2, d4pjfc2
        automated match to d4l4ta1
        complexed with 30w, gol
    26. Domains for 4pji:
      1. 1642746Domain d4pjia1: 4pji A:1-178 [258732]
        Other proteins in same PDB: d4pjia2, d4pjic2, d4pjif1, d4pjif2, d4pjig1, d4pjig2
        automated match to d4l4ta1
        complexed with 30w, gol, na
      2. 1642747Domain d4pjic1: 4pji C:1-178 [258733]
        Other proteins in same PDB: d4pjia2, d4pjic2, d4pjif1, d4pjif2, d4pjig1, d4pjig2
        automated match to d4l4ta1
        complexed with 30w, gol, na
  4. 1642765Mouse (Mus musculus) [TaxId:10090] [224924] (31 PDB entries)
    1. Domains for 1z5l:
      1. 1642775Domain d1z5la2: 1z5l A:8-185 [124481]
        Other proteins in same PDB: d1z5la1, d1z5lb_, d1z5lc1, d1z5ld_
        automated match to d1onqa2
        complexed with nag, pbs, r16
      2. 1642776Domain d1z5lc2: 1z5l C:7-185 [124484]
        Other proteins in same PDB: d1z5la1, d1z5lb_, d1z5lc1, d1z5ld_
        automated match to d1onqa2
        complexed with nag, pbs, r16
    2. Domain for 3au1:
    3. Domain for 3g08:
    4. Domain for 3he6:
    5. Domain for 3he7:
    6. Domain for 3ilp:
    7. Domain for 3ilq:
    8. Domains for 3ma7:
      1. 1642780Domain d3ma7a1: 3ma7 A:7-185 [199819]
        Other proteins in same PDB: d3ma7a2, d3ma7b_, d3ma7c2, d3ma7d_
        automated match to d1onqa2
        complexed with cd4, nag, plm
      2. 1642781Domain d3ma7c1: 3ma7 C:7-185 [199821]
        Other proteins in same PDB: d3ma7a2, d3ma7b_, d3ma7c2, d3ma7d_
        automated match to d1onqa2
        complexed with cd4, nag, plm
    9. Domain for 3o8x:
    10. Domain for 3o9w:
    11. Domain for 3qib:
    12. Domains for 3qiu:
      1. 1642786Domain d3qiua1: 3qiu A:3-81 [215250]
        Other proteins in same PDB: d3qiua2, d3qiub2, d3qiuc1, d3qiuc2, d3qiud1, d3qiud2
        automated match to d2g9ha2
        complexed with nag
      2. 1642787Domain d3qiub1: 3qiu B:3-92 [215252]
        Other proteins in same PDB: d3qiua2, d3qiub2, d3qiuc1, d3qiuc2, d3qiud1, d3qiud2
        automated match to d2sebb2
        complexed with nag
    13. Domain for 3qux:
    14. Domain for 3quy:
    15. Domain for 3quz:
    16. Domain for 3rtq:
    17. Domains for 3rug:
      1. 1642772Domain d3ruga1: 3rug A:8-185 [200522]
        Other proteins in same PDB: d3ruga2, d3rugb_, d3rugc2, d3rugd_, d3ruge1, d3ruge2, d3rugf1, d3rugf2, d3rugg1, d3rugg2, d3rugh1, d3rugh2
        automated match to d1gzpa2
        complexed with db6, nag
      2. 1642773Domain d3rugc1: 3rug C:8-185 [200525]
        Other proteins in same PDB: d3ruga2, d3rugb_, d3rugc2, d3rugd_, d3ruge1, d3ruge2, d3rugf1, d3rugf2, d3rugg1, d3rugg2, d3rugh1, d3rugh2
        automated match to d1gzpa2
        complexed with db6, nag
    18. Domain for 3rzc:
    19. Domain for 3sda:
    20. Domain for 3sdc:
    21. Domain for 3sdd:
    22. Domain for 3t1f:
    23. Domain for 3ta3:
    24. Domains for 3tvm:
      1. 1642789Domain d3tvma1: 3tvm A:6-185 [200881]
        Other proteins in same PDB: d3tvma2, d3tvmb_, d3tvmc1, d3tvmc2, d3tvmd1, d3tvmd2, d3tvme2, d3tvmf_, d3tvmg1, d3tvmg2, d3tvmh1, d3tvmh2
        automated match to d1onqa2
        complexed with 07p, cl, gol, nag
      2. 1642790Domain d3tvme1: 3tvm E:7-185 [200887]
        Other proteins in same PDB: d3tvma2, d3tvmb_, d3tvmc1, d3tvmc2, d3tvmd1, d3tvmd2, d3tvme2, d3tvmf_, d3tvmg1, d3tvmg2, d3tvmh1, d3tvmh2
        automated match to d1onqa2
        complexed with 07p, cl, gol, nag
    25. Domains for 3ubx:
      1. 1642796Domain d3ubxa1: 3ubx A:6-185 [250187]
        Other proteins in same PDB: d3ubxa2, d3ubxb_, d3ubxd2, d3ubxe_, d3ubxi1, d3ubxi2, d3ubxl1, d3ubxl2
        automated match to d3hujc1
        complexed with 09n, nag
      2. 1642797Domain d3ubxd1: 3ubx D:6-185 [250190]
        Other proteins in same PDB: d3ubxa2, d3ubxb_, d3ubxd2, d3ubxe_, d3ubxi1, d3ubxi2, d3ubxl1, d3ubxl2
        automated match to d3hujc1
        complexed with 09n, nag
    26. Domain for 4apq:
    27. Domains for 4g59:
      1. 1642777Domain d4g59a_: 4g59 A: [234445]
        automated match to d1kcgc_
        complexed with nag
      2. 1642778Domain d4g59b_: 4g59 B: [234446]
        automated match to d1kcgc_
        complexed with nag
    28. Domain for 4irj:
    29. Domain for 4irs:
    30. Domain for 4ms8:
    31. Domain for 4mx7:

More info for Protein automated matches from d.19.1.0: automated matches

Timeline for Protein automated matches from d.19.1.0: automated matches: