Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1405985Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 1405986Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 1406890Family d.19.1.0: automated matches [227140] (1 protein)
    not a true family
  6. 1406891Protein automated matches [226842] (3 species)
    not a true protein

Species:

  1. 1406892Chicken (Gallus gallus) [TaxId:9031] [225828] (8 PDB entries)
    1. Domain for 2yez:
    2. Domain for 2yf1:
    3. Domain for 2yf5:
    4. Domain for 2yf6:
    5. Domain for 3dbx:
    6. Domains for 3jvg:
      1. 1406896Domain d3jvga1: 3jvg A:6-180 [199589]
        Other proteins in same PDB: d3jvga2, d3jvgb2, d3jvgc_, d3jvgd_
        automated match to d1gzpa2
        complexed with cl, nag, unl
      2. 1406897Domain d3jvgb1: 3jvg B:6-180 [199591]
        Other proteins in same PDB: d3jvga2, d3jvgb2, d3jvgc_, d3jvgd_
        automated match to d1gzpa2
        complexed with cl, nag, unl
    7. Domain for 3p73:
    8. Domain for 3p77:
  2. 1406902Human (Homo sapiens) [TaxId:9606] [226044] (8 PDB entries)
    1. Domain for 3c5j:
    2. Domain for 3pl6:
    3. Domain for 4aen:
    4. Domain for 4ah2:
    5. Domain for 4fqx:
    6. Domains for 4k71:
      1. 1406912Domain d4k71b1: 4k71 B:5-176 [235111]
        Other proteins in same PDB: d4k71b2, d4k71c_, d4k71e2, d4k71f_
        automated match to d4k71e1
        complexed with so4
      2. 1406913Domain d4k71e1: 4k71 E:5-176 [228471]
        Other proteins in same PDB: d4k71b2, d4k71c_, d4k71e2, d4k71f_
        automated match to d3frua2
        complexed with so4
    7. Domains for 4l4t:
      1. 1406904Domain d4l4ta1: 4l4t A:0-178 [235264]
        Other proteins in same PDB: d4l4ta2, d4l4tc2, d4l4td1, d4l4td2, d4l4te1, d4l4te2, d4l4tg1, d4l4tg2, d4l4th1, d4l4th2
        automated match to d1agda2
        complexed with 6fp
      2. 1406905Domain d4l4tc1: 4l4t C:0-178 [235262]
        Other proteins in same PDB: d4l4ta2, d4l4tc2, d4l4td1, d4l4td2, d4l4te1, d4l4te2, d4l4tg1, d4l4tg2, d4l4th1, d4l4th2
        automated match to d1agda2
        complexed with 6fp
    8. Domains for 4lcw:
      1. 1406909Domain d4lcwa1: 4lcw A:0-178 [228083]
        Other proteins in same PDB: d4lcwa2, d4lcwb_, d4lcwc2, d4lcwd1, d4lcwd2, d4lcwe1, d4lcwe2, d4lcwf_, d4lcwg1, d4lcwg2, d4lcwh1, d4lcwh2
        automated match to d2bcka2
        complexed with 1vy, gol
      2. 1406910Domain d4lcwc1: 4lcw C:0-178 [235338]
        Other proteins in same PDB: d4lcwa2, d4lcwb_, d4lcwc2, d4lcwd1, d4lcwd2, d4lcwe1, d4lcwe2, d4lcwf_, d4lcwg1, d4lcwg2, d4lcwh1, d4lcwh2
        automated match to d4lcwa1
        complexed with 1vy, gol
  3. 1406914Mouse (Mus musculus) [TaxId:10090] [224924] (24 PDB entries)
    1. Domains for 1z5l:
      1. 1406923Domain d1z5la2: 1z5l A:8-185 [124481]
        Other proteins in same PDB: d1z5la1, d1z5lb_, d1z5lc1, d1z5ld_
        automated match to d1onqa2
        complexed with nag, pbs, r16
      2. 1406924Domain d1z5lc2: 1z5l C:7-185 [124484]
        Other proteins in same PDB: d1z5la1, d1z5lb_, d1z5lc1, d1z5ld_
        automated match to d1onqa2
        complexed with nag, pbs, r16
    2. Domain for 3au1:
    3. Domain for 3g08:
    4. Domain for 3he6:
    5. Domain for 3he7:
    6. Domain for 3ilp:
    7. Domain for 3ilq:
    8. Domains for 3ma7:
      1. 1406928Domain d3ma7a1: 3ma7 A:7-185 [199819]
        Other proteins in same PDB: d3ma7a2, d3ma7b_, d3ma7c2, d3ma7d_
        automated match to d1onqa2
        complexed with cd4, nag, plm
      2. 1406929Domain d3ma7c1: 3ma7 C:7-185 [199821]
        Other proteins in same PDB: d3ma7a2, d3ma7b_, d3ma7c2, d3ma7d_
        automated match to d1onqa2
        complexed with cd4, nag, plm
    9. Domain for 3o8x:
    10. Domain for 3o9w:
    11. Domain for 3qib:
    12. Domains for 3qiu:
      1. 1406934Domain d3qiua1: 3qiu A:3-81 [215250]
        Other proteins in same PDB: d3qiua2, d3qiub2, d3qiuc1, d3qiuc2, d3qiud1, d3qiud2
        automated match to d2g9ha2
        complexed with nag
      2. 1406935Domain d3qiub1: 3qiu B:3-92 [215252]
        Other proteins in same PDB: d3qiua2, d3qiub2, d3qiuc1, d3qiuc2, d3qiud1, d3qiud2
        automated match to d2sebb2
        complexed with nag
    13. Domain for 3qux:
    14. Domain for 3quy:
    15. Domain for 3quz:
    16. Domain for 3rtq:
    17. Domains for 3rug:
      1. 1406920Domain d3ruga1: 3rug A:8-185 [200522]
        Other proteins in same PDB: d3ruga2, d3rugb_, d3rugc2, d3rugd_, d3ruge1, d3ruge2, d3rugf1, d3rugf2, d3rugg1, d3rugg2, d3rugh1, d3rugh2
        automated match to d1gzpa2
        complexed with db6, nag
      2. 1406921Domain d3rugc1: 3rug C:8-185 [200525]
        Other proteins in same PDB: d3ruga2, d3rugb_, d3rugc2, d3rugd_, d3ruge1, d3ruge2, d3rugf1, d3rugf2, d3rugg1, d3rugg2, d3rugh1, d3rugh2
        automated match to d1gzpa2
        complexed with db6, nag
    18. Domain for 3rzc:
    19. Domain for 3sda:
    20. Domain for 3t1f:
    21. Domain for 3ta3:
    22. Domains for 3tvm:
      1. 1406937Domain d3tvma1: 3tvm A:6-185 [200881]
        Other proteins in same PDB: d3tvma2, d3tvmb_, d3tvmc1, d3tvmc2, d3tvmd1, d3tvmd2, d3tvme2, d3tvmf_, d3tvmg1, d3tvmg2, d3tvmh1, d3tvmh2
        automated match to d1onqa2
        complexed with 07p, cl, gol, nag
      2. 1406938Domain d3tvme1: 3tvm E:7-185 [200887]
        Other proteins in same PDB: d3tvma2, d3tvmb_, d3tvmc1, d3tvmc2, d3tvmd1, d3tvmd2, d3tvme2, d3tvmf_, d3tvmg1, d3tvmg2, d3tvmh1, d3tvmh2
        automated match to d1onqa2
        complexed with 07p, cl, gol, nag
    23. Domains for 4g59:
      1. 1406925Domain d4g59a_: 4g59 A: [234445]
        automated match to d1kcgc_
        complexed with nag
      2. 1406926Domain d4g59b_: 4g59 B: [234446]
        automated match to d1kcgc_
        complexed with nag
    24. Domain for 4irs:

More info for Protein automated matches from d.19.1.0: automated matches

Timeline for Protein automated matches from d.19.1.0: automated matches: