SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.32: Tubulin nucleotide-binding domain-like [52489] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
Superfamily c.32.1: Tubulin nucleotide-binding domain-like [52490] (2 families)
automatically mapped to Pfam PF00091
Family c.32.1.0: automated matches [227136] (1 protein)
not a true family
Protein automated matches [226838] (4 species)
not a true protein

Species:

Bacillus subtilis [TaxId:1423] [225338] (2 PDB entries)
1. Domain for 2vam:
  - Domain d2vama1: 2vam A:12-208 [206282]
    Other proteins in same PDB: d2vama2
    automated match to d1rq2a1
    complexed with so4
2. Domain for 2vxy:
  - Domain d2vxya1: 2vxy A:11-208 [206532]
    Other proteins in same PDB: d2vxya2
    automated match to d1rq2a1
    complexed with cit, k
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [224885] (2 PDB entries)
1. Domains for 4ffb:
  1. Domain d4ffba1: 4ffb A:1-246 [221161]
    Other proteins in same PDB: d4ffba2, d4ffbb2
    automated match to d1jffa1
    complexed with gtp, mg
  2. Domain d4ffbb1: 4ffb B:1-243 [221163]
    Other proteins in same PDB: d4ffba2, d4ffbb2
    automated match to d1tubb1
    complexed with gtp, mg
2. Domain for 4u3j:
  - Domain d4u3jb1: 4u3j B:1-243 [259123]
    Other proteins in same PDB: d4u3ja2, d4u3jb2
    automated match to d4ffbb1
    complexed with gtp, mg
Human (Homo sapiens) [TaxId:9606] [224982] (3 PDB entries)
1. Domain for 1z5v:
  - Domain d1z5va1: 1z5v A:2-246 [203301]
    Other proteins in same PDB: d1z5va2
    automated match to d1tubb1
    complexed with gsp, mg
2. Domain for 1z5w:
  - Domain d1z5wa1: 1z5w A:2-246 [241118]
    Other proteins in same PDB: d1z5wa2
    automated match to d3cb2a1
    complexed with gtp, mg
3. Domains for 3cb2:
  1. Domain d3cb2a1: 3cb2 A:2-246 [208844]
    Other proteins in same PDB: d3cb2a2, d3cb2b2
    automated match to d1tubb1
    complexed with gdp
  2. Domain d3cb2b1: 3cb2 B:3-246 [208846]
    Other proteins in same PDB: d3cb2a2, d3cb2b2
    automated match to d1tubb1
    complexed with gdp
Saccharomyces cerevisiae [TaxId:4932] [259118] (1 PDB entry)
- Domain for 4u3j:
  - Domain d4u3ja1: 4u3j A:1-246 [259119]
    Other proteins in same PDB: d4u3ja2, d4u3jb2
    automated match to d1tuba1
    complexed with gtp, mg

More info for Protein automated matches from c.32.1.0: automated matches

Timeline for Protein automated matches from c.32.1.0: automated matches:

Protein automated matches from c.32.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.32.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from c.32.1.0: automated matches appears in the current release, SCOPe 2.08