Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2548740Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2548741Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2554828Family d.153.1.0: automated matches [191393] (1 protein)
    not a true family
  6. 2554829Protein automated matches [190509] (15 species)
    not a true protein
  7. 2554848Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226129] (16 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

  1. Domain(s) for 1vsy:
    1. 2554873Domain d1vsyb_: 1vsy B: [343590]
      Other proteins in same PDB: d1vsy1_, d1vsy2_, d1vsya_, d1vsyc_, d1vsyd_, d1vsyf_, d1vsyg_, d1vsyh1, d1vsyh2, d1vsyi_, d1vsyj_, d1vsyk_, d1vsyl_, d1vsym_, d1vsyn_, d1vsyo_, d1vsyq_, d1vsyr_, d1vsyt_, d1vsyu_, d1vsyv1, d1vsyv2, d1vsyw_, d1vsyx_, d1vsyy_, d1vsyz_
      automated match to d5l64k_
    2. 2554874Domain d1vsyp_: 1vsy P: [343591]
      Other proteins in same PDB: d1vsy1_, d1vsy2_, d1vsya_, d1vsyc_, d1vsyd_, d1vsyf_, d1vsyg_, d1vsyh1, d1vsyh2, d1vsyi_, d1vsyj_, d1vsyk_, d1vsyl_, d1vsym_, d1vsyn_, d1vsyo_, d1vsyq_, d1vsyr_, d1vsyt_, d1vsyu_, d1vsyv1, d1vsyv2, d1vsyw_, d1vsyx_, d1vsyy_, d1vsyz_
      automated match to d5l64k_
  2. Domain(s) for 2zcy:
    1. 2554863Domain d2zcyf_: 2zcy F: [154359]
      Other proteins in same PDB: d2zcy0_, d2zcy1_, d2zcya_, d2zcyb_, d2zcyc_, d2zcyd_, d2zcye_, d2zcyg_, d2zcyh_, d2zcyi_, d2zcyj_, d2zcyk_, d2zcyl_, d2zcym_, d2zcyn_, d2zcyo_, d2zcyp_, d2zcyq_, d2zcyr_, d2zcys_, d2zcyu_, d2zcyv_, d2zcyw_, d2zcyx_, d2zcyy_, d2zcyz_
      automated match to d1irug_
      complexed with srg
    2. 2554864Domain d2zcyt_: 2zcy T: [154372]
      Other proteins in same PDB: d2zcy0_, d2zcy1_, d2zcya_, d2zcyb_, d2zcyc_, d2zcyd_, d2zcye_, d2zcyg_, d2zcyh_, d2zcyi_, d2zcyj_, d2zcyk_, d2zcyl_, d2zcym_, d2zcyn_, d2zcyo_, d2zcyp_, d2zcyq_, d2zcyr_, d2zcys_, d2zcyu_, d2zcyv_, d2zcyw_, d2zcyx_, d2zcyy_, d2zcyz_
      automated match to d1irug_
      complexed with srg
  3. Domain(s) for 3bdm:
    1. 2554861Domain d3bdmf_: 3bdm F: [155134]
      Other proteins in same PDB: d3bdm0_, d3bdm1_, d3bdma_, d3bdmb_, d3bdmc_, d3bdmd_, d3bdme_, d3bdmg_, d3bdmh_, d3bdmi_, d3bdmj_, d3bdmk_, d3bdml_, d3bdmm_, d3bdmn_, d3bdmo_, d3bdmp_, d3bdmq_, d3bdmr_, d3bdms_, d3bdmu_, d3bdmv_, d3bdmw_, d3bdmx_, d3bdmy_, d3bdmz_
      automated match to d1irug_
      complexed with gdt
    2. 2554862Domain d3bdmt_: 3bdm T: [155147]
      Other proteins in same PDB: d3bdm0_, d3bdm1_, d3bdma_, d3bdmb_, d3bdmc_, d3bdmd_, d3bdme_, d3bdmg_, d3bdmh_, d3bdmi_, d3bdmj_, d3bdmk_, d3bdml_, d3bdmm_, d3bdmn_, d3bdmo_, d3bdmp_, d3bdmq_, d3bdmr_, d3bdms_, d3bdmu_, d3bdmv_, d3bdmw_, d3bdmx_, d3bdmy_, d3bdmz_
      automated match to d1irug_
      complexed with gdt
  4. Domain(s) for 3l5q:
    1. 2554877Domain d3l5qg_: 3l5q G: [343835]
      Other proteins in same PDB: d3l5q1_, d3l5q2_, d3l5q3_, d3l5q4_, d3l5qa_, d3l5qb1, d3l5qb2, d3l5qc_, d3l5qd1, d3l5qd2, d3l5qh_, d3l5qi_, d3l5qk_, d3l5ql_, d3l5qm_, d3l5qn_, d3l5qo_, d3l5qp_, d3l5qq_, d3l5qr_, d3l5qt_, d3l5qu_, d3l5qw_, d3l5qx_, d3l5qy_, d3l5qz_
      automated match to d5l64k_
    2. 2554878Domain d3l5qs_: 3l5q S: [343836]
      Other proteins in same PDB: d3l5q1_, d3l5q2_, d3l5q3_, d3l5q4_, d3l5qa_, d3l5qb1, d3l5qb2, d3l5qc_, d3l5qd1, d3l5qd2, d3l5qh_, d3l5qi_, d3l5qk_, d3l5ql_, d3l5qm_, d3l5qn_, d3l5qo_, d3l5qp_, d3l5qq_, d3l5qr_, d3l5qt_, d3l5qu_, d3l5qw_, d3l5qx_, d3l5qy_, d3l5qz_
      automated match to d5l64k_
  5. Domain(s) for 3mg4:
    1. 2554881Domain d3mg4d_: 3mg4 D: [334173]
      Other proteins in same PDB: d3mg41_, d3mg42_, d3mg4a_, d3mg4b_, d3mg4c_, d3mg4e_, d3mg4f_, d3mg4g_, d3mg4h_, d3mg4i_, d3mg4j_, d3mg4k_, d3mg4l_, d3mg4m_, d3mg4n_, d3mg4o_, d3mg4p_, d3mg4q_, d3mg4s_, d3mg4t_, d3mg4u_, d3mg4v_, d3mg4w_, d3mg4x_, d3mg4y_, d3mg4z_
      automated match to d1iruf_
      complexed with lxt, mes, mg
    2. 2554882Domain d3mg4r_: 3mg4 R: [334180]
      Other proteins in same PDB: d3mg41_, d3mg42_, d3mg4a_, d3mg4b_, d3mg4c_, d3mg4e_, d3mg4f_, d3mg4g_, d3mg4h_, d3mg4i_, d3mg4j_, d3mg4k_, d3mg4l_, d3mg4m_, d3mg4n_, d3mg4o_, d3mg4p_, d3mg4q_, d3mg4s_, d3mg4t_, d3mg4u_, d3mg4v_, d3mg4w_, d3mg4x_, d3mg4y_, d3mg4z_
      automated match to d1iruf_
      complexed with lxt, mes, mg
  6. Domain(s) for 3mg6:
    1. 2554871Domain d3mg6d_: 3mg6 D: [199838]
      Other proteins in same PDB: d3mg61_, d3mg62_, d3mg6a_, d3mg6b_, d3mg6c_, d3mg6e_, d3mg6f_, d3mg6g_, d3mg6h_, d3mg6i_, d3mg6j_, d3mg6k_, d3mg6l_, d3mg6m_, d3mg6n_, d3mg6o_, d3mg6p_, d3mg6q_, d3mg6s_, d3mg6t_, d3mg6u_, d3mg6v_, d3mg6w_, d3mg6x_, d3mg6y_, d3mg6z_
      automated match to d4eu2f_
      complexed with lzt, mes, mg
    2. 2554872Domain d3mg6r_: 3mg6 R: [199840]
      Other proteins in same PDB: d3mg61_, d3mg62_, d3mg6a_, d3mg6b_, d3mg6c_, d3mg6e_, d3mg6f_, d3mg6g_, d3mg6h_, d3mg6i_, d3mg6j_, d3mg6k_, d3mg6l_, d3mg6m_, d3mg6n_, d3mg6o_, d3mg6p_, d3mg6q_, d3mg6s_, d3mg6t_, d3mg6u_, d3mg6v_, d3mg6w_, d3mg6x_, d3mg6y_, d3mg6z_
      automated match to d4eu2f_
      complexed with lzt, mes, mg
  7. Domain(s) for 3mg7:
    1. 2554879Domain d3mg7d_: 3mg7 D: [199842]
      Other proteins in same PDB: d3mg71_, d3mg72_, d3mg7a_, d3mg7b_, d3mg7c_, d3mg7e_, d3mg7f_, d3mg7g_, d3mg7h_, d3mg7i_, d3mg7j_, d3mg7k_, d3mg7l_, d3mg7m_, d3mg7n_, d3mg7o_, d3mg7p_, d3mg7q_, d3mg7s_, d3mg7t_, d3mg7u_, d3mg7v_, d3mg7w_, d3mg7x_, d3mg7y_, d3mg7z_
      automated match to d4eu2f_
      complexed with l2t, mes, mg
    2. 2554880Domain d3mg7r_: 3mg7 R: [199844]
      Other proteins in same PDB: d3mg71_, d3mg72_, d3mg7a_, d3mg7b_, d3mg7c_, d3mg7e_, d3mg7f_, d3mg7g_, d3mg7h_, d3mg7i_, d3mg7j_, d3mg7k_, d3mg7l_, d3mg7m_, d3mg7n_, d3mg7o_, d3mg7p_, d3mg7q_, d3mg7s_, d3mg7t_, d3mg7u_, d3mg7v_, d3mg7w_, d3mg7x_, d3mg7y_, d3mg7z_
      automated match to d4eu2f_
      complexed with l2t, mes, mg
  8. Domain(s) for 3mg8:
    1. 2554869Domain d3mg8d_: 3mg8 D: [199846]
      Other proteins in same PDB: d3mg81_, d3mg82_, d3mg8a_, d3mg8b_, d3mg8c_, d3mg8e_, d3mg8f_, d3mg8g_, d3mg8h_, d3mg8i_, d3mg8j_, d3mg8k_, d3mg8l_, d3mg8m_, d3mg8n_, d3mg8o_, d3mg8p_, d3mg8q_, d3mg8s_, d3mg8t_, d3mg8u_, d3mg8v_, d3mg8w_, d3mg8x_, d3mg8y_, d3mg8z_
      automated match to d4eu2f_
      complexed with l3t, mes, mg
    2. 2554870Domain d3mg8r_: 3mg8 R: [199848]
      Other proteins in same PDB: d3mg81_, d3mg82_, d3mg8a_, d3mg8b_, d3mg8c_, d3mg8e_, d3mg8f_, d3mg8g_, d3mg8h_, d3mg8i_, d3mg8j_, d3mg8k_, d3mg8l_, d3mg8m_, d3mg8n_, d3mg8o_, d3mg8p_, d3mg8q_, d3mg8s_, d3mg8t_, d3mg8u_, d3mg8v_, d3mg8w_, d3mg8x_, d3mg8y_, d3mg8z_
      automated match to d4eu2f_
      complexed with l3t, mes, mg
  9. Domain(s) for 3nzj:
    1. 2554849Domain d3nzjf_: 3nzj F: [239517]
      Other proteins in same PDB: d3nzj1_, d3nzj2_, d3nzja_, d3nzjb_, d3nzjc_, d3nzjd_, d3nzje_, d3nzjg_, d3nzjh_, d3nzji_, d3nzjj_, d3nzjk_, d3nzjl_, d3nzjm_, d3nzjn_, d3nzjo_, d3nzjp_, d3nzjq_, d3nzjr_, d3nzjs_, d3nzju_, d3nzjv_, d3nzjw_, d3nzjx_, d3nzjy_, d3nzjz_
      automated match to d1irug_
      complexed with mes
    2. 2554850Domain d3nzjt_: 3nzj T: [239520]
      Other proteins in same PDB: d3nzj1_, d3nzj2_, d3nzja_, d3nzjb_, d3nzjc_, d3nzjd_, d3nzje_, d3nzjg_, d3nzjh_, d3nzji_, d3nzjj_, d3nzjk_, d3nzjl_, d3nzjm_, d3nzjn_, d3nzjo_, d3nzjp_, d3nzjq_, d3nzjr_, d3nzjs_, d3nzju_, d3nzjv_, d3nzjw_, d3nzjx_, d3nzjy_, d3nzjz_
      automated match to d1irug_
      complexed with mes
  10. Domain(s) for 3nzw:
    1. 2554853Domain d3nzwf_: 3nzw F: [239523]
      Other proteins in same PDB: d3nzw1_, d3nzw2_, d3nzwa_, d3nzwb_, d3nzwc_, d3nzwd_, d3nzwe_, d3nzwg_, d3nzwh_, d3nzwi_, d3nzwj_, d3nzwk_, d3nzwl_, d3nzwm_, d3nzwn_, d3nzwo_, d3nzwp_, d3nzwq_, d3nzwr_, d3nzws_, d3nzwu_, d3nzwv_, d3nzww_, d3nzwx_, d3nzwy_, d3nzwz_
      automated match to d1irug_
      complexed with mes
    2. 2554854Domain d3nzwt_: 3nzw T: [239526]
      Other proteins in same PDB: d3nzw1_, d3nzw2_, d3nzwa_, d3nzwb_, d3nzwc_, d3nzwd_, d3nzwe_, d3nzwg_, d3nzwh_, d3nzwi_, d3nzwj_, d3nzwk_, d3nzwl_, d3nzwm_, d3nzwn_, d3nzwo_, d3nzwp_, d3nzwq_, d3nzwr_, d3nzws_, d3nzwu_, d3nzwv_, d3nzww_, d3nzwx_, d3nzwy_, d3nzwz_
      automated match to d1irug_
      complexed with mes
  11. Domain(s) for 3nzx:
    1. 2554859Domain d3nzxf_: 3nzx F: [239529]
      Other proteins in same PDB: d3nzx1_, d3nzx2_, d3nzxa_, d3nzxb_, d3nzxc_, d3nzxd_, d3nzxe_, d3nzxg_, d3nzxh_, d3nzxi_, d3nzxj_, d3nzxk_, d3nzxl_, d3nzxm_, d3nzxn_, d3nzxo_, d3nzxp_, d3nzxq_, d3nzxr_, d3nzxs_, d3nzxu_, d3nzxv_, d3nzxw_, d3nzxx_, d3nzxy_, d3nzxz_
      automated match to d1irug_
    2. 2554860Domain d3nzxt_: 3nzx T: [239532]
      Other proteins in same PDB: d3nzx1_, d3nzx2_, d3nzxa_, d3nzxb_, d3nzxc_, d3nzxd_, d3nzxe_, d3nzxg_, d3nzxh_, d3nzxi_, d3nzxj_, d3nzxk_, d3nzxl_, d3nzxm_, d3nzxn_, d3nzxo_, d3nzxp_, d3nzxq_, d3nzxr_, d3nzxs_, d3nzxu_, d3nzxv_, d3nzxw_, d3nzxx_, d3nzxy_, d3nzxz_
      automated match to d1irug_
  12. Domain(s) for 4inr:
    1. 2554855Domain d4inrf_: 4inr F: [240244]
      Other proteins in same PDB: d4inra_, d4inrb_, d4inrc_, d4inrd_, d4inre_, d4inrg_, d4inrh_, d4inri_, d4inrj_, d4inrk_, d4inrl_, d4inrm_, d4inrn_, d4inro_, d4inrp_, d4inrq_, d4inrr_, d4inrs_, d4inru_, d4inrv_, d4inrw_, d4inrx_, d4inry_, d4inrz_
      automated match to d1irug_
      complexed with 1g1
    2. 2554856Domain d4inrt_: 4inr T: [240245]
      Other proteins in same PDB: d4inra_, d4inrb_, d4inrc_, d4inrd_, d4inre_, d4inrg_, d4inrh_, d4inri_, d4inrj_, d4inrk_, d4inrl_, d4inrm_, d4inrn_, d4inro_, d4inrp_, d4inrq_, d4inrr_, d4inrs_, d4inru_, d4inrv_, d4inrw_, d4inrx_, d4inry_, d4inrz_
      automated match to d1irug_
      complexed with 1g1
  13. Domain(s) for 4int:
    1. 2554857Domain d4intf_: 4int F: [240246]
      Other proteins in same PDB: d4inta_, d4intb_, d4intc_, d4intd_, d4inte_, d4intg_, d4inth_, d4inti_, d4intj_, d4intk_, d4intl_, d4intm_, d4intn_, d4into_, d4intp_, d4intq_, d4intr_, d4ints_, d4intu_, d4intv_, d4intw_, d4intx_, d4inty_, d4intz_
      automated match to d1irug_
      complexed with 1g5
    2. 2554858Domain d4intt_: 4int T: [240247]
      Other proteins in same PDB: d4inta_, d4intb_, d4intc_, d4intd_, d4inte_, d4intg_, d4inth_, d4inti_, d4intj_, d4intk_, d4intl_, d4intm_, d4intn_, d4into_, d4intp_, d4intq_, d4intr_, d4ints_, d4intu_, d4intv_, d4intw_, d4intx_, d4inty_, d4intz_
      automated match to d1irug_
      complexed with 1g5
  14. Domain(s) for 4inu:
    1. 2554865Domain d4inuc_: 4inu C: [252646]
      Other proteins in same PDB: d4inua_, d4inub_, d4inue_, d4inug_, d4inuh_, d4inui_, d4inuj_, d4inuk_, d4inul_, d4inum_, d4inun_, d4inuo_, d4inup_, d4inus_, d4inuu_, d4inuv_, d4inuw_, d4inux_, d4inuy_, d4inuz_
      automated match to d4eu2a_
      complexed with 1g6
    2. 2554866Domain d4inuf_: 4inu F: [252648]
      Other proteins in same PDB: d4inua_, d4inub_, d4inue_, d4inug_, d4inuh_, d4inui_, d4inuj_, d4inuk_, d4inul_, d4inum_, d4inun_, d4inuo_, d4inup_, d4inus_, d4inuu_, d4inuv_, d4inuw_, d4inux_, d4inuy_, d4inuz_
      automated match to d1irug_
      complexed with 1g6
    3. 2554867Domain d4inuq_: 4inu Q: [252659]
      Other proteins in same PDB: d4inua_, d4inub_, d4inue_, d4inug_, d4inuh_, d4inui_, d4inuj_, d4inuk_, d4inul_, d4inum_, d4inun_, d4inuo_, d4inup_, d4inus_, d4inuu_, d4inuv_, d4inuw_, d4inux_, d4inuy_, d4inuz_
      automated match to d4eu2a_
      complexed with 1g6
    4. 2554868Domain d4inut_: 4inu T: [252661]
      Other proteins in same PDB: d4inua_, d4inub_, d4inue_, d4inug_, d4inuh_, d4inui_, d4inuj_, d4inuk_, d4inul_, d4inum_, d4inun_, d4inuo_, d4inup_, d4inus_, d4inuu_, d4inuv_, d4inuw_, d4inux_, d4inuy_, d4inuz_
      automated match to d1irug_
      complexed with 1g6
  15. Domain(s) for 4j70:
    1. 2554851Domain d4j70f_: 4j70 F: [240282]
      Other proteins in same PDB: d4j70a_, d4j70b_, d4j70c_, d4j70d_, d4j70e_, d4j70g_, d4j70h_, d4j70i_, d4j70j_, d4j70k_, d4j70l_, d4j70m_, d4j70n_, d4j70o_, d4j70p_, d4j70q_, d4j70r_, d4j70s_, d4j70u_, d4j70v_, d4j70w_, d4j70x_, d4j70y_, d4j70z_
      automated match to d1irug_
      complexed with 1kr
    2. 2554852Domain d4j70t_: 4j70 T: [240283]
      Other proteins in same PDB: d4j70a_, d4j70b_, d4j70c_, d4j70d_, d4j70e_, d4j70g_, d4j70h_, d4j70i_, d4j70j_, d4j70k_, d4j70l_, d4j70m_, d4j70n_, d4j70o_, d4j70p_, d4j70q_, d4j70r_, d4j70s_, d4j70u_, d4j70v_, d4j70w_, d4j70x_, d4j70y_, d4j70z_
      automated match to d1irug_
      complexed with 1kr
  16. Domain(s) for 5ahj:
    1. 2554875Domain d5ahjc_: 5ahj C: [310165]
      Other proteins in same PDB: d5ahja_, d5ahjb_, d5ahjd_, d5ahje_, d5ahjf_, d5ahjg_, d5ahjh_, d5ahji_, d5ahjj_, d5ahjk_, d5ahjl_, d5ahjm_, d5ahjn_, d5ahjo_, d5ahjp_, d5ahjr_, d5ahjs_, d5ahjt_, d5ahju_, d5ahjv_, d5ahjw_, d5ahjx_, d5ahjy_, d5ahjz_
      automated match to d4eu2a_
      complexed with 7im, cl, mes, mg
    2. 2554876Domain d5ahjq_: 5ahj Q: [310178]
      Other proteins in same PDB: d5ahja_, d5ahjb_, d5ahjd_, d5ahje_, d5ahjf_, d5ahjg_, d5ahjh_, d5ahji_, d5ahjj_, d5ahjk_, d5ahjl_, d5ahjm_, d5ahjn_, d5ahjo_, d5ahjp_, d5ahjr_, d5ahjs_, d5ahjt_, d5ahju_, d5ahjv_, d5ahjw_, d5ahjx_, d5ahjy_, d5ahjz_
      automated match to d4eu2a_
      complexed with 7im, cl, mes, mg

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.153.1.0 automated matches

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.153.1.0 automated matches: