SCOPe 2.04: Species: Protaminobacter rubrum [TaxId: 126825]

Lineage for Species: Protaminobacter rubrum [TaxId: 126825]

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein automated matches [190099] (19 species)
not a true protein
Species Protaminobacter rubrum [TaxId:126825] [225680] (2 PDB entries)

PDB entries in Species: Protaminobacter rubrum [TaxId: 126825]:

Domain(s) for 3gbd:
- Domain d3gbda1: 3gbd A:16-493 [210475]
  Other proteins in same PDB: d3gbda2
  automated match to d1m53a2
  complexed with edo, flc
Domain(s) for 3gbe:
- Domain d3gbea1: 3gbe A:16-493 [210477]
  Other proteins in same PDB: d3gbea2
  automated match to d1m53a2
  complexed with edo, flc, noj

More info for Species Protaminobacter rubrum [TaxId:126825] from c.1.8.1 automated matches

Timeline for Species Protaminobacter rubrum [TaxId:126825] from c.1.8.1 automated matches:

Species Protaminobacter rubrum [TaxId:126825] from c.1.8.1 automated matches first appeared in SCOPe 2.03
Species Protaminobacter rubrum [TaxId:126825] from c.1.8.1 automated matches appears in SCOPe 2.05
Species Protaminobacter rubrum [TaxId:126825] from c.1.8.1 automated matches appears in the current release, SCOPe 2.08