Lineage for Species: Oryza sativa [TaxId: 39947]

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1818156Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1820295Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 1820296Protein automated matches [190075] (72 species)
    not a true protein
  7. 1820541Species Oryza sativa [TaxId:39947] [225407] (26 PDB entries)

PDB entries in Species: Oryza sativa [TaxId: 39947]:

  1. Domain(s) for 2rgl:
    1. 1820577Domain d2rgla_: 2rgl A: [206096]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn
    2. 1820578Domain d2rglb_: 2rgl B: [206097]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn
  2. Domain(s) for 2rgm:
    1. 1820544Domain d2rgma_: 2rgm A: [206098]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn
    2. 1820545Domain d2rgmb_: 2rgm B: [206099]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn
  3. Domain(s) for 3aht:
    1. 1820587Domain d3ahta_: 3aht A: [208213]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
    2. 1820588Domain d3ahtb_: 3aht B: [208214]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
  4. Domain(s) for 3ahv:
    1. 1820567Domain d3ahva_: 3ahv A: [208215]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn; mutant
    2. 1820568Domain d3ahvb_: 3ahv B: [208216]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn; mutant
  5. Domain(s) for 3f4v:
    1. 1820550Domain d3f4va_: 3f4v A: [209793]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
    2. 1820551Domain d3f4vb_: 3f4v B: [209794]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
  6. Domain(s) for 3f5j:
    1. 1820569Domain d3f5ja_: 3f5j A: [209795]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820570Domain d3f5jb_: 3f5j B: [209796]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  7. Domain(s) for 3f5k:
    1. 1820554Domain d3f5ka_: 3f5k A: [209797]
      automated match to d1v03a_
      complexed with ce5, gol, mes, so4, zn; mutant
    2. 1820555Domain d3f5kb_: 3f5k B: [209798]
      automated match to d1v03a_
      complexed with ce5, gol, mes, so4, zn; mutant
  8. Domain(s) for 3f5l:
    1. 1820542Domain d3f5la_: 3f5l A: [209799]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
    2. 1820543Domain d3f5lb_: 3f5l B: [209800]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
  9. Domain(s) for 3gno:
  10. Domain(s) for 3gnp:
  11. Domain(s) for 3gnr:
  12. Domain(s) for 3scn:
    1. 1820579Domain d3scna_: 3scn A: [216325]
      automated match to d1v03a_
      complexed with mes, so4, zn; mutant
    2. 1820580Domain d3scnb_: 3scn B: [216326]
      automated match to d1v03a_
      complexed with mes, so4, zn; mutant
  13. Domain(s) for 3sco:
    1. 1820565Domain d3scoa_: 3sco A: [216327]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
    2. 1820566Domain d3scob_: 3sco B: [216328]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
  14. Domain(s) for 3scp:
    1. 1820571Domain d3scpa_: 3scp A: [216329]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
    2. 1820572Domain d3scpb_: 3scp B: [216330]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
  15. Domain(s) for 3scq:
    1. 1820573Domain d3scqa_: 3scq A: [216331]
      automated match to d1v03a_
      complexed with glf, mes, so4, zn; mutant
    2. 1820574Domain d3scqb_: 3scq B: [216332]
      automated match to d1v03a_
      complexed with glf, mes, so4, zn; mutant
  16. Domain(s) for 3scr:
    1. 1820556Domain d3scra_: 3scr A: [216333]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
    2. 1820557Domain d3scrb_: 3scr B: [216334]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
  17. Domain(s) for 3scs:
    1. 1820560Domain d3scsa_: 3scs A: [216335]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
    2. 1820561Domain d3scsb_: 3scs B: [216336]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
  18. Domain(s) for 3sct:
    1. 1820548Domain d3scta_: 3sct A: [216337]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820549Domain d3sctb_: 3sct B: [216338]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  19. Domain(s) for 3scu:
    1. 1820546Domain d3scua_: 3scu A: [216339]
      automated match to d1v03a_
      complexed with ce5, mes, so4, zn; mutant
    2. 1820547Domain d3scub_: 3scu B: [216340]
      automated match to d1v03a_
      complexed with ce5, mes, so4, zn; mutant
  20. Domain(s) for 3scv:
    1. 1820575Domain d3scva_: 3scv A: [216341]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820576Domain d3scvb_: 3scv B: [216342]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  21. Domain(s) for 3scw:
    1. 1820563Domain d3scwa_: 3scw A: [216343]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820564Domain d3scwb_: 3scw B: [216344]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  22. Domain(s) for 3wba:
  23. Domain(s) for 3wbe:
  24. Domain(s) for 4qlj:
    1. 1820585Domain d4qlja_: 4qlj A: [273896]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820586Domain d4qljb_: 4qlj B: [273895]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  25. Domain(s) for 4qlk:
    1. 1820581Domain d4qlka_: 4qlk A: [273898]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820582Domain d4qlkb_: 4qlk B: [273900]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  26. Domain(s) for 4qll:
    1. 1820583Domain d4qlla_: 4qll A: [273901]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 1820584Domain d4qllb_: 4qll B: [273903]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant

More info for Species Oryza sativa [TaxId:39947] from c.1.8.0 automated matches

Timeline for Species Oryza sativa [TaxId:39947] from c.1.8.0 automated matches: