Lineage for Species: Sphingobium yanoikuyae [TaxId: 13690]

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2214642Fold d.129: TBP-like [55944] (11 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 2214908Superfamily d.129.3: Bet v1-like [55961] (11 families) (S)
    contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix
  5. 2215232Family d.129.3.0: automated matches [191339] (1 protein)
    not a true family
  6. 2215233Protein automated matches [190218] (22 species)
    not a true protein
  7. 2215426Species Sphingobium yanoikuyae [TaxId:13690] [225237] (2 PDB entries)

PDB entries in Species: Sphingobium yanoikuyae [TaxId: 13690]:

  1. Domain(s) for 2gbw:
    1. 2215427Domain d2gbwa2: 2gbw A:153-454 [197939]
      Other proteins in same PDB: d2gbwa1, d2gbwb_, d2gbwc1, d2gbwd_, d2gbwe1, d2gbwf_
      automated match to d1eg9a2
      complexed with fe, fes, oxy
    2. 2215428Domain d2gbwc2: 2gbw C:153-451 [197941]
      Other proteins in same PDB: d2gbwa1, d2gbwb_, d2gbwc1, d2gbwd_, d2gbwe1, d2gbwf_
      automated match to d1eg9a2
      complexed with fe, fes, oxy
    3. 2215429Domain d2gbwe2: 2gbw E:153-454 [197943]
      Other proteins in same PDB: d2gbwa1, d2gbwb_, d2gbwc1, d2gbwd_, d2gbwe1, d2gbwf_
      automated match to d1eg9a2
      complexed with fe, fes, oxy
  2. Domain(s) for 2gbx:
    1. 2215430Domain d2gbxa2: 2gbx A:153-454 [197945]
      Other proteins in same PDB: d2gbxa1, d2gbxb_, d2gbxc1, d2gbxd_, d2gbxe1, d2gbxf_
      automated match to d1eg9a2
      complexed with bnl, fe, fes, zn
    2. 2215431Domain d2gbxc2: 2gbx C:153-451 [197947]
      Other proteins in same PDB: d2gbxa1, d2gbxb_, d2gbxc1, d2gbxd_, d2gbxe1, d2gbxf_
      automated match to d1eg9a2
      complexed with bnl, fe, fes, zn
    3. 2215432Domain d2gbxe2: 2gbx E:153-454 [197949]
      Other proteins in same PDB: d2gbxa1, d2gbxb_, d2gbxc1, d2gbxd_, d2gbxe1, d2gbxf_
      automated match to d1eg9a2
      complexed with bnl, fe, fes, zn

More info for Species Sphingobium yanoikuyae [TaxId:13690] from d.129.3.0 automated matches

Timeline for Species Sphingobium yanoikuyae [TaxId:13690] from d.129.3.0 automated matches: