Lineage for d4fmgf_ (4fmg F:)

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1334432Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 1335234Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 1335235Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 1335275Protein automated matches [191200] (3 species)
    not a true protein
  7. 1335314Species Merkel cell polyomavirus [TaxId:493803] [226460] (4 PDB entries)
  8. 1335360Domain d4fmgf_: 4fmg F: [221288]
    automated match to d1vpsb_
    complexed with cl, gol

Details for d4fmgf_

PDB Entry: 4fmg (more details), 2.1 Å

PDB Description: Merkel Cell Polyomavirus VP1 Unassembled Pentamer
PDB Compounds: (F:) vp1

SCOPe Domain Sequences for d4fmgf_:

Sequence, based on SEQRES records: (download)

>d4fmgf_ b.121.6.1 (F:) automated matches {Merkel cell polyomavirus [TaxId: 493803]}
vevlsvvtgedsitqielylnprmgvnspdlpttsnwytytydlqpkgsspdqpikenlp
aysvarvslpmlneditcdtlqmweaisvktevvgisslinvhywdmkrvhdygagipvs
gvnyhmfaiggepldlqglvldyqtqypkttnggpitietvlgrkmtpknqgldpqakak
ldkdgnypievwcpdpsknensryygsiqtgsqtptvlqfsntlttvlldengvgplckg
dglfiscadivgflfktsgkmalhglpryfnvtlrkrwvk

Sequence, based on observed residues (ATOM records): (download)

>d4fmgf_ b.121.6.1 (F:) automated matches {Merkel cell polyomavirus [TaxId: 493803]}
vevlsvvtgedsitqielylnprmgvnspdlpttsnwytytydlqpkgsspdqpikenlp
aysvarvslpmlntlqmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhm
faiggepldlqglvldyqtqypkttgpitietvlgrkmtpknqgldpqakakldkdgnyp
ievwcpdpsknensryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfisca
divgflfktsgkmalhglpryfnvtlrkrwvk

SCOPe Domain Coordinates for d4fmgf_:

Click to download the PDB-style file with coordinates for d4fmgf_.
(The format of our PDB-style files is described here.)

Timeline for d4fmgf_: