SCOPe 2.05: Domain d4f62a_: 4f62 A:

Lineage for d4f62a_ (4f62 A:)

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (30 species)
   not a true protein

7. Species Marinomonas sp. [TaxId:314277] [226403] (1 PDB entry)

8. Domain d4f62a_: 4f62 A: [221038]
   automated match to d3p8ra_
   complexed with cl, gol, so4

Details for d4f62a_

PDB Entry: 4f62, 2.1 Å

PDB Description: crystal structure of a putative farnesyl-diphosphate synthase from marinomonas sp. med121 (target efi-501980)

PDB Compounds: (A:) Geranyltranstransferase

SCOPe Domain Sequences for d4f62a_:

Sequence, based on SEQRES records:

>d4f62a_ a.128.1.0 (A:) automated matches {Marinomonas sp. [TaxId: 314277]}
vmnlkqfstytqsrvdqyleqqlsdyapanqlhnamryslfnggkrirpmltyasaqlvg
dissltdasaaalesihayslihddlpamdndelrrgkptchiqfdeatailagdalqtf
afellsnptsaqpelaikliqelvvasgrngmitgqmidlssenknislaeleqmhvhkt
galikasvrmgalstgqvkpeqlakldayahaiglafqvqddiidltsdtetlgktqfsd
aeankatypkllgldgakalvvrlheqaiaqisefgdksqpltdlanyiid

Sequence, based on observed residues (ATOM records):

>d4f62a_ a.128.1.0 (A:) automated matches {Marinomonas sp. [TaxId: 314277]}
vmnlkqfstytqsrvdqyleqqlsdyapanqlhnamryslfggkrirpmltyasaqlvgd
issltdasaaalesihayslihddlpamdnptchiqfdeatailagdalqtfafellsnp
tsaqpelaikliqelvvasgrngmitgqmidlssenknislaeleqmhvhktgalikasv
rmgalstgqvkpeqlakldayahaiglafqvqddiidltnkatypkllgldgakalvvrl
heqaiaqisefgdksqpltdlanyiid

Timeline for d4f62a_:

• d4f62a_ first appeared in SCOPe 2.03
  
• d4f62a_ appears in SCOPe 2.04
  
• d4f62a_ is called d4f62a1 in SCOPe 2.06
  
• d4f62a_ appears in the current release, SCOPe 2.08, called d4f62a1