Lineage for d4ds4d2 (4ds4 D:469-876)

  1. Root: SCOPe 2.06
  2. 2243857Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2246832Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2246833Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2246834Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
  6. 2247126Protein automated matches [226972] (9 species)
    not a true protein
  7. 2247152Species Geobacillus kaustophilus [TaxId:235909] [226400] (6 PDB entries)
  8. 2247157Domain d4ds4d2: 4ds4 D:469-876 [219993]
    Other proteins in same PDB: d4ds4a1, d4ds4d1
    automated match to d2hhva2
    protein/DNA complex; complexed with so4

Details for d4ds4d2

PDB Entry: 4ds4 (more details), 1.68 Å

PDB Description: Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and rCTP in presence of Mn2+
PDB Compounds: (D:) DNA polymerase

SCOPe Domain Sequences for d4ds4d2:

Sequence, based on SEQRES records: (download)

>d4ds4d2 e.8.1.1 (D:469-876) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

Sequence, based on observed residues (ATOM records): (download)

>d4ds4d2 e.8.1.1 (D:469-876) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktkavnfgivygisdyglaqnlnis
rkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfae
rmamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlv
pevmeqavtlrvplkvdyhygstwydak

SCOPe Domain Coordinates for d4ds4d2:

Click to download the PDB-style file with coordinates for d4ds4d2.
(The format of our PDB-style files is described here.)

Timeline for d4ds4d2:

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Domains from same chain:
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d4ds4d1