Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.1: DNA polymerase I [56673] (5 proteins) |
Protein automated matches [226972] (9 species) not a true protein |
Species Geobacillus kaustophilus [TaxId:235909] [226400] (6 PDB entries) |
Domain d4ds4d2: 4ds4 D:469-876 [219993] Other proteins in same PDB: d4ds4a1, d4ds4d1 automated match to d2hhva2 protein/DNA complex; complexed with so4 |
PDB Entry: 4ds4 (more details), 1.68 Å
SCOPe Domain Sequences for d4ds4d2:
Sequence, based on SEQRES records: (download)
>d4ds4d2 e.8.1.1 (D:469-876) automated matches {Geobacillus kaustophilus [TaxId: 235909]} eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi egllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
>d4ds4d2 e.8.1.1 (D:469-876) automated matches {Geobacillus kaustophilus [TaxId: 235909]} eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi egllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl ifaadysqielrvlahiaeddnlmeafrrdldihtktkavnfgivygisdyglaqnlnis rkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfae rmamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemerlcrlv pevmeqavtlrvplkvdyhygstwydak
Timeline for d4ds4d2: