SCOPe 2.06: Domain d4dqrd2: 4dqr D:469-876

Lineage for d4dqrd2 (4dqr D:469-876)

1. Root: SCOPe 2.06

2. Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein automated matches [226972] (9 species)
   not a true protein

7. Species Geobacillus kaustophilus [TaxId:235909] [226400] (6 PDB entries)

8. Domain d4dqrd2: 4dqr D:469-876 [219957]
   Other proteins in same PDB: d4dqra1, d4dqrd1
   automated match to d2hhva2
   protein/DNA complex; complexed with ctp, mn, mpd, so4

Details for d4dqrd2

PDB Entry: 4dqr, 1.95 Å

PDB Description: Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mn2+

PDB Compounds: (D:) DNA polymerase

SCOPe Domain Sequences for d4dqrd2:

Sequence; same for both SEQRES and ATOM records:

>d4dqrd2 e.8.1.1 (D:469-876) automated matches {Geobacillus kaustophilus [TaxId: 235909]}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqialrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

Timeline for d4dqrd2:

• d4dqrd2 first appeared in SCOPe 2.03
  
• d4dqrd2 appears in SCOPe 2.05
  
• d4dqrd2 appears in SCOPe 2.07
  
• d4dqrd2 appears in the current release, SCOPe 2.08