Lineage for d1ggya1 (1ggy A:8-190)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2361840Superfamily b.1.18: E set domains [81296] (24 families) (S)
    "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
  5. 2362437Family b.1.18.9: Transglutaminase N-terminal domain [81289] (1 protein)
  6. 2362438Protein Transglutaminase N-terminal domain [49235] (4 species)
    elaborated with many loop insertions in the common fold
  7. 2362439Species Human (Homo sapiens), blood isozyme [TaxId:9606] [49236] (9 PDB entries)
    Coagulation factor XIII
  8. 2362450Domain d1ggya1: 1ggy A:8-190 [21887]
    Other proteins in same PDB: d1ggya2, d1ggya3, d1ggya4, d1ggyb2, d1ggyb3, d1ggyb4
    complexed with yb

Details for d1ggya1

PDB Entry: 1ggy (more details), 2.5 Å

PDB Description: human factor xiii with ytterbium bound in the ion site
PDB Compounds: (A:) protein (coagulation factor xiii)

SCOPe Domain Sequences for d1ggya1:

Sequence, based on SEQRES records: (download)

>d1ggya1 b.1.18.9 (A:8-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

Sequence, based on observed residues (ATOM records): (download)

>d1ggya1 b.1.18.9 (A:8-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

SCOPe Domain Coordinates for d1ggya1:

Click to download the PDB-style file with coordinates for d1ggya1.
(The format of our PDB-style files is described here.)

Timeline for d1ggya1: