SCOPe 2.08: Domain d3upfb_: 3upf B:

Lineage for d3upfb_ (3upf B:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)

6. Protein automated matches [190260] (25 species)
   not a true protein

7. Species Murine norovirus 1 [TaxId:223997] [189982] (9 PDB entries)

8. Domain d3upfb_: 3upf B: [217473]
   automated match to d1sh0a_
   protein/RNA complex; complexed with 0bu, so4

Details for d3upfb_

PDB Entry: 3upf, 2.6 Å

PDB Description: Crystal structure of murine norovirus RNA-dependent RNA polymerase bound to NF023

PDB Compounds: (B:) RNA-dependent RNA polymerase

SCOPe Domain Sequences for d3upfb_:

Sequence, based on SEQRES records:

>d3upfb_ e.8.1.4 (B:) automated matches {Murine norovirus 1 [TaxId: 223997]}
lprpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqq
vmrdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgy
pyhkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikk
rllwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmda
dytrwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsg
cpcttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytma
lrrygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgp
nhqnpfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgiemvvprhrsv
lrwvrfg

Sequence, based on observed residues (ATOM records):

>d3upfb_ e.8.1.4 (B:) automated matches {Murine norovirus 1 [TaxId: 223997]}
lprpsgtyaglpiadygdapplstktmfwrtspeklppgawepaylgskdervdgpslqq
vmrdqlkpyseprgllppqeildavcdaienrlentlepqkpwtfkkacesldkntssgy
pyhkqkskdwtgsafigdlgdqathannmyemgksmrpiytaalkdelvkpdkiygkikk
rllwgsdlgtmiraarafgpfcdalketcifnpirvgmsmnedgpfifarhanfryhmda
dytrwdstqqrailkragdimvrlspepdlarvvmddllapslldvgdykivveeglpsg
ccttqlnslahwiltlcamvevtrvdpdivmqesefsfygddevvstnleldmvkytmal
rrygllptradkeegplerrqtlqgisflrraivgdqfgwygrldrasidrqllwtkgpn
hqnpfetlpghaqrpsqlmallgeaamhgekyyrtvasrvskeaaqsgvvprhrsvlrwv
rfg

Timeline for d3upfb_:

• d3upfb_ first appeared in SCOPe 2.03
  
• d3upfb_ appears in SCOPe 2.07