SCOPe 2.08: Domain d3rtva1: 3rtv A:293-422

Lineage for d3rtva1 (3rtv A:293-422)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
   contains Pfam PF00929

6. Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
   part of Klenow fragment, KF

7. Species Thermus aquaticus [TaxId:271] [53121] (29 PDB entries)

8. Domain d3rtva1: 3rtv A:293-422 [216066]
   Other proteins in same PDB: d3rtva2
   automated match to d1jxea1
   protein/DNA complex; complexed with act, dcp, gol, mg

Details for d3rtva1

PDB Entry: 3rtv, 1.9 Å

PDB Description: Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in a closed ternary complex with natural primer/template DNA

PDB Compounds: (A:) DNA polymerase I, thermostable

SCOPe Domain Sequences for d3rtva1:

Sequence; same for both SEQRES and ATOM records:

>d3rtva1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]}
aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargll
akdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserl
fanlwgrleg

Timeline for d3rtva1:

• d3rtva1 first appeared in SCOPe 2.03
  
• d3rtva1 appears in SCOPe 2.07