SCOPe 2.06: Domain d3npkb1: 3npk B:2-278

Lineage for d3npkb1 (3npk B:2-278)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (37 species)
   not a true protein

7. Species Campylobacter jejuni [TaxId:195099] [225924] (1 PDB entry)

8. Domain d3npkb1: 3npk B:2-278 [214033]
   Other proteins in same PDB: d3npka2, d3npkb2
   automated match to d1vg2a_
   complexed with gol, ppv

Details for d3npkb1

PDB Entry: 3npk, 1.5 Å

PDB Description: the crystal structure of geranyltranstransferase from campylobacter jejuni

PDB Compounds: (B:) Geranyltranstransferase

SCOPe Domain Sequences for d3npkb1:

Sequence, based on SEQRES records:

>d3npkb1 a.128.1.0 (B:2-278) automated matches {Campylobacter jejuni [TaxId: 195099]}
nlkelfihhleknlpkvesfhpffnealalmlkaggkhfraqlllsvvqsnkpellnqal
dvalalefihtyslihddlpamdnadfrrgiptlhksydettailvgdalnteaflvlsh
ahlkdeikikliktlafnaglngmvigqaidcffedkrlslneleflhthktarliaaal
kmgceicelnneesnqiyklglklglifqinddiidvttsqeqsgkptnndihknsfvnl
lgleqaiktkenllneceqdleklneklaqmiqnlii

Sequence, based on observed residues (ATOM records):

>d3npkb1 a.128.1.0 (B:2-278) automated matches {Campylobacter jejuni [TaxId: 195099]}
nlkelfihhleknlpkvesfhpffnealalmlkaggkhfraqlllsvvqsnkpellnqal
dvalalefihtyslihddlpamdnadfrrgiptlhksydettailvgdalnteaflvlsh
ahlkdeikikliktlafnaglngmvigqaidcffedkrlslneleflhthktarliaaal
kmgceicelnneesnqiyklglklglifqinddiidnsfvnllgleqaiktkenllnece
qdleklneklaqmiqnlii

Timeline for d3npkb1:

• d3npkb1 first appeared in SCOPe 2.03, called d3npkb_
  
• d3npkb1 was called d3npkb_ in SCOPe 2.05
  
• d3npkb1 appears in SCOPe 2.07
  
• d3npkb1 appears in the current release, SCOPe 2.08