Lineage for d3n8da2 (3n8d A:129-353)

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1432977Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 1432978Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (10 families) (S)
  5. 1433300Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 1433301Protein automated matches [226904] (18 species)
    not a true protein
  7. 1433342Species Staphylococcus aureus [TaxId:1280] [225146] (2 PDB entries)
  8. 1433345Domain d3n8da2: 3n8d A:129-353 [213786]
    Other proteins in same PDB: d3n8da1, d3n8db1
    automated match to d1ehib2
    complexed with anp, cl, so4

Details for d3n8da2

PDB Entry: 3n8d (more details), 2.3 Å

PDB Description: Crystal structure of Staphylococcus aureus VRSA-9 D-Ala:D-Ala ligase
PDB Compounds: (A:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d3n8da2:

Sequence, based on SEQRES records: (download)

>d3n8da2 d.142.1.0 (A:129-353) automated matches {Staphylococcus aureus [TaxId: 1280]}
dklvmkqlfehrglpqlpyisflrseyekyehnilklvndklnypvfvkpanlgssvgis
kcnneaelkegikeafqfdrklvieqgvnareievavlgndypeatwpgevvkdvafydy
kskykdgkvqlkipadldedvqltlrnmaleafketdcsglvradffvtednqiyinetn
ampgftafsmypklwenmglsypelitklielakerhqdkqknky

Sequence, based on observed residues (ATOM records): (download)

>d3n8da2 d.142.1.0 (A:129-353) automated matches {Staphylococcus aureus [TaxId: 1280]}
dklvmkqlfehrglpqlpyisflrseyekyehnilklvndklnypvfvkpanlgssvgis
kcnneaelkegikeafqfdrklvieqgvnareievavlgndypeatwpgevvvqlkipad
ldedvqltlrnmaleafketdcsglvradffvtednqiyinetnampgftafsmypklwe
nmglsypelitklielakerhqdkqknky

SCOPe Domain Coordinates for d3n8da2:

Click to download the PDB-style file with coordinates for d3n8da2.
(The format of our PDB-style files is described here.)

Timeline for d3n8da2:

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Domains from same chain:
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d3n8da1