Lineage for d1cfna2 (1cfn A:108-214)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2352459Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2352460Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2356941Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)
  6. 2360179Protein Immunoglobulin light chain kappa constant domain, CL-kappa [88566] (4 species)
  7. 2360423Species Mouse (Mus musculus) [TaxId:10090] [88567] (368 PDB entries)
    Uniprot P01837# KAC_MOUSE Ig kappa chain C region; 99% sequence identity ! SQ NA # natural chimera; best hits are: Uniprot P01637 (Ig kappa chain V-V region T1) and Uniprot P01837 (Ig kappa chain C region) ! Uniprot P01837 # KAC_MOUSE Ig kappa chain C region ! Uniprot P01837 # KAC_MOUSE (P01837) Ig kappa chain C region ! SQ NA # part of Fab 28 against HIV-1 RT ! Uniprot P01837 # ! KAC_MOUSE Ig kappa chain C region
  8. 2360795Domain d1cfna2: 1cfn A:108-214 [21340]
    Other proteins in same PDB: d1cfna1, d1cfnb1, d1cfnb2
    part of anti-gp120 (HIV-1) Fab CB 4-1

Details for d1cfna2

PDB Entry: 1cfn (more details), 2.65 Å

PDB Description: anti-p24 (hiv-1) fab fragment cb41 complexed with an epitope-related peptide
PDB Compounds: (A:) protein (igg2a kappa antibody cb41 (light chain))

SCOPe Domain Sequences for d1cfna2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1cfna2 b.1.1.2 (A:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}
radaaptvsifppsseqltsggasvvcflnnfypkeinvkwkidgserqngvldswteqd
skdstysmsstltltkdeyerhnsytceathktstspivksfnrnec

SCOPe Domain Coordinates for d1cfna2:

Click to download the PDB-style file with coordinates for d1cfna2.
(The format of our PDB-style files is described here.)

Timeline for d1cfna2:

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Domains from same chain:
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d1cfna1