SCOPe 2.08: Domain d3gbac_: 3gba C:

Lineage for d3gbac_ (3gba C:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (161 species)
   not a true protein

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (113 PDB entries)

8. Domain d3gbac_: 3gba C: [210471]
   Other proteins in same PDB: d3gbaa2, d3gbab2
   automated match to d1ycjb_
   complexed with cl, dyh, gol, so4

Details for d3gbac_

PDB Entry: 3gba, 1.35 Å

PDB Description: x-ray structure of iglur5 ligand-binding core (s1s2) in complex with dysiherbaine at 1.35a resolution

PDB Compounds: (C:) Glutamate receptor, ionotropic kainate 1

SCOPe Domain Sequences for d3gbac_:

Sequence, based on SEQRES records:

>d3gbac_ c.94.1.0 (C:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
tlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgkygaq
ndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpidsad
dlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrvlttd
yallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeegklh
mmkekwwrgngcp

Sequence, based on observed residues (ATOM records):

>d3gbac_ c.94.1.0 (C:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
tlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgkygaq
ndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpidsad
dlakqkieygavrdgstmtffkkskistyekmwafmssrqsalvknsdegiqrvlttdya
llmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeegklhmm
kekwwrgngcp

Timeline for d3gbac_:

• d3gbac_ first appeared in SCOPe 2.03
  
• d3gbac_ appears in SCOPe 2.07