SCOPe 2.04: Domain d3g4db2: 3g4d B:227-554

Lineage for d3g4db2 (3g4d B:227-554)

1. Root: SCOPe 2.04

2. Class a: All alpha proteins [46456] (285 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (27 species)
   not a true protein

7. Species Gossypium arboreum [TaxId:29729] [225679] (2 PDB entries)

8. Domain d3g4db2: 3g4d B:227-554 [210354]
   Other proteins in same PDB: d3g4da1, d3g4db1
   automated match to d1hxga2
   complexed with bme, gol

Details for d3g4db2

PDB Entry: 3g4d, 2.4 Å

PDB Description: Crystal Structure of (+)-delta-Cadinene Synthase from Gossypium arboreum and Evolutionary Divergence of Metal Binding Motifs for Catalysis

PDB Compounds: (B:) (+)-delta-cadinene synthase isozyme XC1

SCOPe Domain Sequences for d3g4db2:

Sequence, based on SEQRES records:

>d3g4db2 a.128.1.0 (B:227-554) automated matches {Gossypium arboreum [TaxId: 29729]}
hnkallefakidfnmlqflhrkelseicrwwkdldfqrklpyardrvvegyfwisgvyfe
pqyslgrkmltkviamasivddtydsyatyeelipytnaierwdikcideipeymkpsyk
alldvyeemvqlvaehgrqyrveyaknamirlaqsylveakwtlqnykpsfeefkanalp
tcgyamlaitsfvgmgdivtpetfkwaasdpkiiqastiicrfmddvaehkfkhrreddc
saiecymeeygvtaqeaydvfnkhvesawkdlnqeflkptemptevlnrslnlarvmdvl
yregdgytyvgkaakggitslliepial

Sequence, based on observed residues (ATOM records):

>d3g4db2 a.128.1.0 (B:227-554) automated matches {Gossypium arboreum [TaxId: 29729]}
hnkallefakidfnmlqflhrkelseicrwwkdldfqrklpyardrvvegyfwisgvyfe
pqyslgrkmltkviamasivddtydsyatyeelipytnaierwdikcideipeymkpsyk
alldvyeemvqlvaehgrqyrveyaknamirlaqsylveakwtlqnykpsfeefkanalp
tcgyamlaitsfvgmgdivtpetfkwaasdpkiiqastiicrfmddvaehkfkdcsaiec
ymeeygvtaqeaydvfnkhvesawkdlnqeflkptemptevlnrslnlarvmdvlyregd
ggkaakggitslliepial

Timeline for d3g4db2:

• d3g4db2 first appeared in SCOPe 2.03
  
• d3g4db2 appears in SCOPe 2.05
  
• d3g4db2 appears in the current release, SCOPe 2.08